data_3LTS # _model_server_result.job_id 2A58FzSZNABZZTBYb2viEA _model_server_result.datetime_utc '2024-10-17 13:17:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":229}' # _entry.id 3LTS # _exptl.entry_id 3LTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-HYDROXYURIDINE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LTS _cell.length_a 56.535 _cell.length_b 56.555 _cell.length_c 128.779 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H13 N2 O10 P' _chem_comp.formula_weight 340.181 _chem_comp.id BMP _chem_comp.mon_nstd_flag . _chem_comp.name "6-HYDROXYURIDINE-5'-PHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP1 BMP doub 70 n n P OP2 BMP sing 71 n n P OP3 BMP sing 72 n n P O5' BMP sing 73 n n OP2 HOP2 BMP sing 74 n n OP3 HOP3 BMP sing 75 n n O5' C5' BMP sing 76 n n C5' C4' BMP sing 77 n n C5' H5' BMP sing 78 n n C5' "H5''" BMP sing 79 n n C4' O4' BMP sing 80 n n C4' C3' BMP sing 81 n n C4' H4' BMP sing 82 n n O4' C1' BMP sing 83 n n C3' O3' BMP sing 84 n n C3' C2' BMP sing 85 n n C3' H3' BMP sing 86 n n O3' HO3' BMP sing 87 n n C2' O2' BMP sing 88 n n C2' C1' BMP sing 89 n n C2' H2' BMP sing 90 n n O2' HO2' BMP sing 91 n n C1' N1 BMP sing 92 n n C1' H1' BMP sing 93 n n N1 C2 BMP sing 94 n n N1 C6 BMP sing 95 n n C2 O2 BMP doub 96 n n C2 N3 BMP sing 97 n n N3 C4 BMP sing 98 n n N3 HN3 BMP sing 99 n n C4 O4 BMP doub 100 n n C4 C5 BMP sing 101 n n C5 C6 BMP doub 102 n n C5 H51 BMP sing 103 n n C6 O1 BMP sing 104 n n O1 HO1 BMP sing 105 n n # _atom_sites.entry_id 3LTS _atom_sites.fract_transf_matrix[1][1] 0.017688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BMP A 1 229 1 BMP BMP . D 2 BMP B 1 229 2 BMP BMP . E 3 HOH A 1 230 3 HOH HOH . E 3 HOH A 2 231 6 HOH HOH . E 3 HOH A 3 232 7 HOH HOH . E 3 HOH A 4 233 8 HOH HOH . E 3 HOH A 5 234 10 HOH HOH . E 3 HOH A 6 235 11 HOH HOH . E 3 HOH A 7 236 15 HOH HOH . E 3 HOH A 8 237 17 HOH HOH . E 3 HOH A 9 238 19 HOH HOH . E 3 HOH A 10 239 22 HOH HOH . E 3 HOH A 11 240 23 HOH HOH . E 3 HOH A 12 241 25 HOH HOH . E 3 HOH A 13 242 26 HOH HOH . E 3 HOH A 14 243 29 HOH HOH . E 3 HOH A 15 244 30 HOH HOH . E 3 HOH A 16 245 31 HOH HOH . E 3 HOH A 17 246 32 HOH HOH . E 3 HOH A 18 247 33 HOH HOH . E 3 HOH A 19 248 35 HOH HOH . E 3 HOH A 20 249 37 HOH HOH . E 3 HOH A 21 250 39 HOH HOH . E 3 HOH A 22 251 41 HOH HOH . E 3 HOH A 23 252 43 HOH HOH . E 3 HOH A 24 253 48 HOH HOH . E 3 HOH A 25 254 50 HOH HOH . E 3 HOH A 26 255 53 HOH HOH . E 3 HOH A 27 256 57 HOH HOH . E 3 HOH A 28 257 61 HOH HOH . E 3 HOH A 29 258 62 HOH HOH . E 3 HOH A 30 259 66 HOH HOH . E 3 HOH A 31 260 68 HOH HOH . E 3 HOH A 32 261 70 HOH HOH . E 3 HOH A 33 262 71 HOH HOH . E 3 HOH A 34 263 73 HOH HOH . E 3 HOH A 35 264 74 HOH HOH . E 3 HOH A 36 265 76 HOH HOH . E 3 HOH A 37 266 77 HOH HOH . E 3 HOH A 38 267 78 HOH HOH . E 3 HOH A 39 268 81 HOH HOH . E 3 HOH A 40 269 84 HOH HOH . E 3 HOH A 41 270 85 HOH HOH . E 3 HOH A 42 271 87 HOH HOH . E 3 HOH A 43 272 88 HOH HOH . E 3 HOH A 44 273 89 HOH HOH . E 3 HOH A 45 274 90 HOH HOH . E 3 HOH A 46 275 92 HOH HOH . E 3 HOH A 47 276 93 HOH HOH . E 3 HOH A 48 277 96 HOH HOH . E 3 HOH A 49 278 100 HOH HOH . E 3 HOH A 50 279 102 HOH HOH . E 3 HOH A 51 280 107 HOH HOH . E 3 HOH A 52 281 109 HOH HOH . E 3 HOH A 53 282 110 HOH HOH . E 3 HOH A 54 283 112 HOH HOH . E 3 HOH A 55 284 114 HOH HOH . E 3 HOH A 56 285 118 HOH HOH . E 3 HOH A 57 286 120 HOH HOH . E 3 HOH A 58 287 121 HOH HOH . E 3 HOH A 59 288 123 HOH HOH . E 3 HOH A 60 289 127 HOH HOH . E 3 HOH A 61 290 129 HOH HOH . E 3 HOH A 62 291 130 HOH HOH . E 3 HOH A 63 292 131 HOH HOH . E 3 HOH A 64 293 134 HOH HOH . E 3 HOH A 65 294 136 HOH HOH . E 3 HOH A 66 295 138 HOH HOH . E 3 HOH A 67 296 139 HOH HOH . E 3 HOH A 68 297 141 HOH HOH . E 3 HOH A 69 298 143 HOH HOH . E 3 HOH A 70 299 145 HOH HOH . E 3 HOH A 71 300 147 HOH HOH . E 3 HOH A 72 301 151 HOH HOH . E 3 HOH A 73 302 153 HOH HOH . E 3 HOH A 74 303 157 HOH HOH . E 3 HOH A 75 304 158 HOH HOH . E 3 HOH A 76 305 160 HOH HOH . E 3 HOH A 77 306 161 HOH HOH . E 3 HOH A 78 307 162 HOH HOH . E 3 HOH A 79 308 164 HOH HOH . E 3 HOH A 80 309 165 HOH HOH . E 3 HOH A 81 310 166 HOH HOH . F 3 HOH B 1 230 1 HOH HOH . F 3 HOH B 2 231 2 HOH HOH . F 3 HOH B 3 232 4 HOH HOH . F 3 HOH B 4 233 5 HOH HOH . F 3 HOH B 5 234 9 HOH HOH . F 3 HOH B 6 235 12 HOH HOH . F 3 HOH B 7 236 13 HOH HOH . F 3 HOH B 8 237 14 HOH HOH . F 3 HOH B 9 238 16 HOH HOH . F 3 HOH B 10 239 18 HOH HOH . F 3 HOH B 11 240 20 HOH HOH . F 3 HOH B 12 241 21 HOH HOH . F 3 HOH B 13 242 24 HOH HOH . F 3 HOH B 14 243 27 HOH HOH . F 3 HOH B 15 244 28 HOH HOH . F 3 HOH B 16 245 34 HOH HOH . F 3 HOH B 17 246 36 HOH HOH . F 3 HOH B 18 247 38 HOH HOH . F 3 HOH B 19 248 40 HOH HOH . F 3 HOH B 20 249 42 HOH HOH . F 3 HOH B 21 250 44 HOH HOH . F 3 HOH B 22 251 45 HOH HOH . F 3 HOH B 23 252 46 HOH HOH . F 3 HOH B 24 253 47 HOH HOH . F 3 HOH B 25 254 49 HOH HOH . F 3 HOH B 26 255 51 HOH HOH . F 3 HOH B 27 256 52 HOH HOH . F 3 HOH B 28 257 54 HOH HOH . F 3 HOH B 29 258 55 HOH HOH . F 3 HOH B 30 259 56 HOH HOH . F 3 HOH B 31 260 58 HOH HOH . F 3 HOH B 32 261 59 HOH HOH . F 3 HOH B 33 262 60 HOH HOH . F 3 HOH B 34 263 63 HOH HOH . F 3 HOH B 35 264 64 HOH HOH . F 3 HOH B 36 265 65 HOH HOH . F 3 HOH B 37 266 67 HOH HOH . F 3 HOH B 38 267 69 HOH HOH . F 3 HOH B 39 268 72 HOH HOH . F 3 HOH B 40 269 75 HOH HOH . F 3 HOH B 41 270 79 HOH HOH . F 3 HOH B 42 271 80 HOH HOH . F 3 HOH B 43 272 82 HOH HOH . F 3 HOH B 44 273 83 HOH HOH . F 3 HOH B 45 274 86 HOH HOH . F 3 HOH B 46 275 91 HOH HOH . F 3 HOH B 47 276 94 HOH HOH . F 3 HOH B 48 277 95 HOH HOH . F 3 HOH B 49 278 97 HOH HOH . F 3 HOH B 50 279 98 HOH HOH . F 3 HOH B 51 280 99 HOH HOH . F 3 HOH B 52 281 101 HOH HOH . F 3 HOH B 53 282 103 HOH HOH . F 3 HOH B 54 283 104 HOH HOH . F 3 HOH B 55 284 105 HOH HOH . F 3 HOH B 56 285 106 HOH HOH . F 3 HOH B 57 286 108 HOH HOH . F 3 HOH B 58 287 111 HOH HOH . F 3 HOH B 59 288 113 HOH HOH . F 3 HOH B 60 289 115 HOH HOH . F 3 HOH B 61 290 116 HOH HOH . F 3 HOH B 62 291 117 HOH HOH . F 3 HOH B 63 292 119 HOH HOH . F 3 HOH B 64 293 122 HOH HOH . F 3 HOH B 65 294 124 HOH HOH . F 3 HOH B 66 295 125 HOH HOH . F 3 HOH B 67 296 126 HOH HOH . F 3 HOH B 68 297 128 HOH HOH . F 3 HOH B 69 298 132 HOH HOH . F 3 HOH B 70 299 133 HOH HOH . F 3 HOH B 71 300 135 HOH HOH . F 3 HOH B 72 301 137 HOH HOH . F 3 HOH B 73 302 140 HOH HOH . F 3 HOH B 74 303 142 HOH HOH . F 3 HOH B 75 304 144 HOH HOH . F 3 HOH B 76 305 146 HOH HOH . F 3 HOH B 77 306 148 HOH HOH . F 3 HOH B 78 307 149 HOH HOH . F 3 HOH B 79 308 150 HOH HOH . F 3 HOH B 80 309 152 HOH HOH . F 3 HOH B 81 310 154 HOH HOH . F 3 HOH B 82 311 155 HOH HOH . F 3 HOH B 83 312 156 HOH HOH . F 3 HOH B 84 313 159 HOH HOH . F 3 HOH B 85 314 163 HOH HOH . F 3 HOH B 86 315 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P BMP . . . C 2 21.26 1.987 10.434 1 18.91 ? P BMP 229 A 1 HETATM 2 O OP1 BMP . . . C 2 20.539 0.754 9.819 1 21.46 ? OP1 BMP 229 A 1 HETATM 3 O OP2 BMP . . . C 2 22.082 2.807 9.393 1 22.4 ? OP2 BMP 229 A 1 HETATM 4 O OP3 BMP . . . C 2 20.264 2.876 11.139 1 20.21 ? OP3 BMP 229 A 1 HETATM 5 O O5' BMP . . . C 2 22.33 1.492 11.487 1 20.19 ? O5' BMP 229 A 1 HETATM 6 C C5' BMP . . . C 2 22.086 0.365 12.225 1 21.04 ? C5' BMP 229 A 1 HETATM 7 C C4' BMP . . . C 2 23.205 0.035 13.187 1 19.61 ? C4' BMP 229 A 1 HETATM 8 O O4' BMP . . . C 2 22.913 -0.885 14.295 1 19.31 ? O4' BMP 229 A 1 HETATM 9 C C3' BMP . . . C 2 24.569 -0.389 12.693 1 19.57 ? C3' BMP 229 A 1 HETATM 10 O O3' BMP . . . C 2 25.671 0.211 13.257 1 19.26 ? O3' BMP 229 A 1 HETATM 11 C C2' BMP . . . C 2 24.52 -1.851 12.778 1 18.93 ? C2' BMP 229 A 1 HETATM 12 O O2' BMP . . . C 2 25.669 -2.584 12.6 1 16.36 ? O2' BMP 229 A 1 HETATM 13 C C1' BMP . . . C 2 23.654 -2.142 13.99 1 19.09 ? C1' BMP 229 A 1 HETATM 14 N N1 BMP . . . C 2 22.892 -3.342 14.177 1 17 ? N1 BMP 229 A 1 HETATM 15 C C2 BMP . . . C 2 21.847 -3.567 13.152 1 18.79 ? C2 BMP 229 A 1 HETATM 16 O O2 BMP . . . C 2 21.546 -2.58 12.26 1 21.54 ? O2 BMP 229 A 1 HETATM 17 N N3 BMP . . . C 2 20.871 -4.719 13.398 1 18.62 ? N3 BMP 229 A 1 HETATM 18 C C4 BMP . . . C 2 21.234 -5.725 14.501 1 18.88 ? C4 BMP 229 A 1 HETATM 19 O O4 BMP . . . C 2 20.318 -6.697 14.764 1 20.56 ? O4 BMP 229 A 1 HETATM 20 C C5 BMP . . . C 2 22.244 -5.304 15.529 1 17.31 ? C5 BMP 229 A 1 HETATM 21 C C6 BMP . . . C 2 23.069 -4.115 15.315 1 18.59 ? C6 BMP 229 A 1 HETATM 22 O O1 BMP . . . C 2 23.827 -3.579 16.321 1 19.65 ? O1 BMP 229 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #