data_3LTV
#
_model_server_result.job_id            o2SeBLjdT-Hk5p5LCRpMYQ 
_model_server_result.datetime_utc      '2025-07-03 02:17:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ltv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1001}' 
#
_entry.id    3LTV 
#
_exptl.entry_id    3LTV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3LTV 
_cell.length_a            127.48 
_cell.length_b            127.48 
_cell.length_c            102.494 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LTV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,M,N 1 1 
C,D,I,J,O,P 2 1 
E,F,K,L,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
disulf ? disulf2 B SG CYS 57 B CYS 57 1_555 B SG CYS 146 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf3 C SG CYS 57 C CYS 57 1_555 C SG CYS 146 C CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 D SG CYS 57 D CYS 57 1_555 D SG CYS 146 D CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf5 E SG CYS 57 E CYS 57 1_555 E SG CYS 146 E CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf6 F SG CYS 57 F CYS 57 1_555 F SG CYS 146 F CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc1 A ND1 HIS 63 A HIS 63 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc2 A ND1 HIS 71 A HIS 71 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc3 A ND1 HIS 80 A HIS 80 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc4 A OD2 ASP 83 A ASP 83 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc5 B ND1 HIS 63 B HIS 63 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc6 B ND1 HIS 71 B HIS 71 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc7 B ND1 HIS 80 B HIS 80 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc8 B OD2 ASP 83 B ASP 83 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc9 C ND1 HIS 71 C HIS 71 1_555 I ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc10 C ND1 HIS 80 C HIS 80 1_555 I ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc11 C OD1 ASP 83 C ASP 83 1_555 I ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc12 D ND1 HIS 63 D HIS 63 1_555 J ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc13 D ND1 HIS 71 D HIS 71 1_555 J ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc14 D ND1 HIS 80 D HIS 80 1_555 J ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc15 D OD1 ASP 83 D ASP 83 1_555 J ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc16 E ND1 HIS 63 E HIS 63 1_555 K ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc17 E ND1 HIS 71 E HIS 71 1_555 K ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc18 E ND1 HIS 80 E HIS 80 1_555 K ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc19 E OD2 ASP 83 E ASP 83 1_555 K ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc20 E OD1 ASP 83 E ASP 83 1_555 K ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc21 F ND1 HIS 63 F HIS 63 1_555 L ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc22 F ND1 HIS 71 F HIS 71 1_555 L ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc23 F ND1 HIS 80 F HIS 80 1_555 L ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc24 F OD2 ASP 83 F ASP 83 1_555 L ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3LTV 
_atom_sites.fract_transf_matrix[1][1]    0.007844 
_atom_sites.fract_transf_matrix[1][2]    0.004529 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009058 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ZN A 1 1001 1001 ZN ZN . 
H 2 ZN B 1 1001 1001 ZN ZN . 
I 2 ZN C 1 1001 1001 ZN ZN . 
J 2 ZN D 1 1001 1001 ZN ZN . 
K 2 ZN E 1 1001 1001 ZN ZN . 
L 2 ZN F 1 1001 1001 ZN ZN . 
M 3 HOH A 1 154 1 HOH HOH . 
M 3 HOH A 2 155 8 HOH HOH . 
M 3 HOH A 3 156 9 HOH HOH . 
M 3 HOH A 4 157 11 HOH HOH . 
M 3 HOH A 5 158 12 HOH HOH . 
M 3 HOH A 6 159 15 HOH HOH . 
M 3 HOH A 7 160 21 HOH HOH . 
M 3 HOH A 8 161 22 HOH HOH . 
M 3 HOH A 9 162 23 HOH HOH . 
M 3 HOH A 10 163 31 HOH HOH . 
M 3 HOH A 11 164 32 HOH HOH . 
M 3 HOH A 12 165 33 HOH HOH . 
M 3 HOH A 13 166 48 HOH HOH . 
M 3 HOH A 14 167 50 HOH HOH . 
M 3 HOH A 15 168 53 HOH HOH . 
M 3 HOH A 16 169 56 HOH HOH . 
M 3 HOH A 17 170 58 HOH HOH . 
M 3 HOH A 18 171 61 HOH HOH . 
M 3 HOH A 19 172 63 HOH HOH . 
M 3 HOH A 20 173 77 HOH HOH . 
M 3 HOH A 21 174 80 HOH HOH . 
M 3 HOH A 22 175 83 HOH HOH . 
M 3 HOH A 23 176 84 HOH HOH . 
M 3 HOH A 24 177 85 HOH HOH . 
M 3 HOH A 25 178 86 HOH HOH . 
M 3 HOH A 26 179 90 HOH HOH . 
M 3 HOH A 27 180 92 HOH HOH . 
M 3 HOH A 28 181 98 HOH HOH . 
M 3 HOH A 29 182 99 HOH HOH . 
M 3 HOH A 30 183 101 HOH HOH . 
M 3 HOH A 31 184 104 HOH HOH . 
M 3 HOH A 32 185 105 HOH HOH . 
M 3 HOH A 33 186 115 HOH HOH . 
M 3 HOH A 34 187 116 HOH HOH . 
M 3 HOH A 35 188 119 HOH HOH . 
M 3 HOH A 36 189 120 HOH HOH . 
M 3 HOH A 37 190 124 HOH HOH . 
M 3 HOH A 38 191 125 HOH HOH . 
M 3 HOH A 39 192 135 HOH HOH . 
M 3 HOH A 40 193 143 HOH HOH . 
M 3 HOH A 41 194 145 HOH HOH . 
N 3 HOH B 1 154 2 HOH HOH . 
N 3 HOH B 2 155 6 HOH HOH . 
N 3 HOH B 3 156 13 HOH HOH . 
N 3 HOH B 4 157 16 HOH HOH . 
N 3 HOH B 5 158 26 HOH HOH . 
N 3 HOH B 6 159 27 HOH HOH . 
N 3 HOH B 7 160 35 HOH HOH . 
N 3 HOH B 8 161 46 HOH HOH . 
N 3 HOH B 9 162 47 HOH HOH . 
N 3 HOH B 10 163 52 HOH HOH . 
N 3 HOH B 11 164 66 HOH HOH . 
N 3 HOH B 12 165 68 HOH HOH . 
N 3 HOH B 13 166 69 HOH HOH . 
N 3 HOH B 14 167 70 HOH HOH . 
N 3 HOH B 15 168 72 HOH HOH . 
N 3 HOH B 16 169 76 HOH HOH . 
N 3 HOH B 17 170 79 HOH HOH . 
N 3 HOH B 18 171 81 HOH HOH . 
N 3 HOH B 19 172 89 HOH HOH . 
N 3 HOH B 20 173 94 HOH HOH . 
N 3 HOH B 21 174 100 HOH HOH . 
N 3 HOH B 22 175 103 HOH HOH . 
N 3 HOH B 23 176 108 HOH HOH . 
N 3 HOH B 24 177 111 HOH HOH . 
N 3 HOH B 25 178 113 HOH HOH . 
N 3 HOH B 26 179 114 HOH HOH . 
N 3 HOH B 27 180 118 HOH HOH . 
N 3 HOH B 28 181 128 HOH HOH . 
N 3 HOH B 29 182 130 HOH HOH . 
N 3 HOH B 30 183 131 HOH HOH . 
N 3 HOH B 31 184 134 HOH HOH . 
N 3 HOH B 32 185 139 HOH HOH . 
N 3 HOH B 33 186 141 HOH HOH . 
O 3 HOH C 1 154 3 HOH HOH . 
O 3 HOH C 2 155 29 HOH HOH . 
O 3 HOH C 3 156 39 HOH HOH . 
O 3 HOH C 4 157 44 HOH HOH . 
O 3 HOH C 5 158 54 HOH HOH . 
O 3 HOH C 6 159 65 HOH HOH . 
O 3 HOH C 7 160 87 HOH HOH . 
O 3 HOH C 8 161 132 HOH HOH . 
P 3 HOH D 1 154 4 HOH HOH . 
P 3 HOH D 2 155 5 HOH HOH . 
P 3 HOH D 3 156 18 HOH HOH . 
P 3 HOH D 4 157 19 HOH HOH . 
P 3 HOH D 5 158 20 HOH HOH . 
P 3 HOH D 6 159 41 HOH HOH . 
P 3 HOH D 7 160 43 HOH HOH . 
P 3 HOH D 8 161 49 HOH HOH . 
P 3 HOH D 9 162 59 HOH HOH . 
P 3 HOH D 10 163 60 HOH HOH . 
P 3 HOH D 11 164 62 HOH HOH . 
P 3 HOH D 12 165 64 HOH HOH . 
P 3 HOH D 13 166 67 HOH HOH . 
P 3 HOH D 14 167 74 HOH HOH . 
P 3 HOH D 15 168 91 HOH HOH . 
P 3 HOH D 16 169 96 HOH HOH . 
P 3 HOH D 17 170 106 HOH HOH . 
P 3 HOH D 18 171 109 HOH HOH . 
P 3 HOH D 19 172 110 HOH HOH . 
P 3 HOH D 20 173 112 HOH HOH . 
P 3 HOH D 21 174 123 HOH HOH . 
P 3 HOH D 22 175 127 HOH HOH . 
P 3 HOH D 23 176 129 HOH HOH . 
P 3 HOH D 24 177 137 HOH HOH . 
P 3 HOH D 25 178 138 HOH HOH . 
P 3 HOH D 26 179 144 HOH HOH . 
Q 3 HOH E 1 154 17 HOH HOH . 
Q 3 HOH E 2 155 24 HOH HOH . 
Q 3 HOH E 3 156 117 HOH HOH . 
Q 3 HOH E 4 157 133 HOH HOH . 
R 3 HOH F 1 154 7 HOH HOH . 
R 3 HOH F 2 155 10 HOH HOH . 
R 3 HOH F 3 156 14 HOH HOH . 
R 3 HOH F 4 157 25 HOH HOH . 
R 3 HOH F 5 158 28 HOH HOH . 
R 3 HOH F 6 159 30 HOH HOH . 
R 3 HOH F 7 160 34 HOH HOH . 
R 3 HOH F 8 161 36 HOH HOH . 
R 3 HOH F 9 162 37 HOH HOH . 
R 3 HOH F 10 163 38 HOH HOH . 
R 3 HOH F 11 164 40 HOH HOH . 
R 3 HOH F 12 165 42 HOH HOH . 
R 3 HOH F 13 166 45 HOH HOH . 
R 3 HOH F 14 167 51 HOH HOH . 
R 3 HOH F 15 168 55 HOH HOH . 
R 3 HOH F 16 169 57 HOH HOH . 
R 3 HOH F 17 170 71 HOH HOH . 
R 3 HOH F 18 171 73 HOH HOH . 
R 3 HOH F 19 172 75 HOH HOH . 
R 3 HOH F 20 173 78 HOH HOH . 
R 3 HOH F 21 174 82 HOH HOH . 
R 3 HOH F 22 175 88 HOH HOH . 
R 3 HOH F 23 176 93 HOH HOH . 
R 3 HOH F 24 177 95 HOH HOH . 
R 3 HOH F 25 178 97 HOH HOH . 
R 3 HOH F 26 179 102 HOH HOH . 
R 3 HOH F 27 180 107 HOH HOH . 
R 3 HOH F 28 181 121 HOH HOH . 
R 3 HOH F 29 182 122 HOH HOH . 
R 3 HOH F 30 183 126 HOH HOH . 
R 3 HOH F 31 184 136 HOH HOH . 
R 3 HOH F 32 185 140 HOH HOH . 
R 3 HOH F 33 186 142 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -30.633 
_atom_site.Cartn_y               55.971 
_atom_site.Cartn_z               3.11 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.94 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#