data_3LU1 # _model_server_result.job_id jTwExJdMxwmuE4FTn9VXkw _model_server_result.datetime_utc '2024-10-13 19:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":345}' # _entry.id 3LU1 # _exptl.entry_id 3LU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LU1 _cell.length_a 78.13 _cell.length_b 78.13 _cell.length_c 231.924 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,U 1 1 C,K,L,M,N,W 1 2 B,D,H,I,J,O,P,Q,R,S,T,V,X 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x+y,-x,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 77.308 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 Q NA NA . D NA 345 1_555 X O HOH . D HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc2 Q NA NA . D NA 345 1_555 X O HOH . D HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 Q NA NA . D NA 345 1_555 X O HOH . D HOH 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LU1 _atom_sites.fract_transf_matrix[1][1] 0.012799 _atom_sites.fract_transf_matrix[1][2] 0.00739 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 343 341 NAD NAD . F 3 UD2 A 1 344 341 UD2 UD2 . G 4 GLY A 1 345 1 GLY GLY . H 2 NAD B 1 343 341 NAD NAD . I 3 UD2 B 1 344 341 UD2 UD2 . J 4 GLY B 1 345 2 GLY GLY . K 2 NAD C 1 343 341 NAD NAD . L 3 UD2 C 1 344 341 UD2 UD2 . M 5 SO4 C 1 345 2 SO4 SO4 . N 4 GLY C 1 346 3 GLY GLY . O 2 NAD D 1 344 344 NAD NAD . P 3 UD2 D 1 343 344 UD2 UD2 . Q 6 NA D 1 345 1 NA NA . R 5 SO4 D 1 346 1 SO4 SO4 . S 5 SO4 D 1 347 3 SO4 SO4 . T 4 GLY D 1 348 4 GLY GLY . U 7 HOH A 1 346 15 HOH HOH . U 7 HOH A 2 347 17 HOH HOH . U 7 HOH A 3 348 31 HOH HOH . U 7 HOH A 4 349 37 HOH HOH . U 7 HOH A 5 350 40 HOH HOH . U 7 HOH A 6 351 62 HOH HOH . U 7 HOH A 7 352 64 HOH HOH . U 7 HOH A 8 353 67 HOH HOH . U 7 HOH A 9 354 72 HOH HOH . U 7 HOH A 10 355 76 HOH HOH . U 7 HOH A 11 356 91 HOH HOH . U 7 HOH A 12 357 95 HOH HOH . U 7 HOH A 13 358 96 HOH HOH . U 7 HOH A 14 359 98 HOH HOH . U 7 HOH A 15 360 99 HOH HOH . U 7 HOH A 16 361 104 HOH HOH . U 7 HOH A 17 362 115 HOH HOH . U 7 HOH A 18 363 117 HOH HOH . U 7 HOH A 19 364 128 HOH HOH . U 7 HOH A 20 365 129 HOH HOH . U 7 HOH A 21 366 130 HOH HOH . U 7 HOH A 22 367 131 HOH HOH . U 7 HOH A 23 368 132 HOH HOH . U 7 HOH A 24 369 133 HOH HOH . U 7 HOH A 25 370 134 HOH HOH . U 7 HOH A 26 371 135 HOH HOH . U 7 HOH A 27 372 136 HOH HOH . U 7 HOH A 28 373 137 HOH HOH . U 7 HOH A 29 374 153 HOH HOH . U 7 HOH A 30 375 154 HOH HOH . U 7 HOH A 31 376 155 HOH HOH . U 7 HOH A 32 377 156 HOH HOH . U 7 HOH A 33 378 166 HOH HOH . U 7 HOH A 34 379 167 HOH HOH . U 7 HOH A 35 380 168 HOH HOH . U 7 HOH A 36 381 169 HOH HOH . U 7 HOH A 37 382 170 HOH HOH . U 7 HOH A 38 383 171 HOH HOH . U 7 HOH A 39 384 172 HOH HOH . U 7 HOH A 40 385 173 HOH HOH . U 7 HOH A 41 386 174 HOH HOH . U 7 HOH A 42 387 175 HOH HOH . U 7 HOH A 43 388 176 HOH HOH . U 7 HOH A 44 389 177 HOH HOH . U 7 HOH A 45 390 178 HOH HOH . U 7 HOH A 46 391 179 HOH HOH . V 7 HOH B 1 346 3 HOH HOH . V 7 HOH B 2 347 6 HOH HOH . V 7 HOH B 3 348 10 HOH HOH . V 7 HOH B 4 349 11 HOH HOH . V 7 HOH B 5 350 12 HOH HOH . V 7 HOH B 6 351 16 HOH HOH . V 7 HOH B 7 352 19 HOH HOH . V 7 HOH B 8 353 21 HOH HOH . V 7 HOH B 9 354 22 HOH HOH . V 7 HOH B 10 355 24 HOH HOH . V 7 HOH B 11 356 25 HOH HOH . V 7 HOH B 12 357 27 HOH HOH . V 7 HOH B 13 358 28 HOH HOH . V 7 HOH B 14 359 29 HOH HOH . V 7 HOH B 15 360 34 HOH HOH . V 7 HOH B 16 361 35 HOH HOH . V 7 HOH B 17 362 46 HOH HOH . V 7 HOH B 18 363 51 HOH HOH . V 7 HOH B 19 364 57 HOH HOH . V 7 HOH B 20 365 60 HOH HOH . V 7 HOH B 21 366 63 HOH HOH . V 7 HOH B 22 367 65 HOH HOH . V 7 HOH B 23 368 66 HOH HOH . V 7 HOH B 24 369 73 HOH HOH . V 7 HOH B 25 370 74 HOH HOH . V 7 HOH B 26 371 77 HOH HOH . V 7 HOH B 27 372 79 HOH HOH . V 7 HOH B 28 373 80 HOH HOH . V 7 HOH B 29 374 81 HOH HOH . V 7 HOH B 30 375 83 HOH HOH . V 7 HOH B 31 376 84 HOH HOH . V 7 HOH B 32 377 87 HOH HOH . V 7 HOH B 33 378 89 HOH HOH . V 7 HOH B 34 379 90 HOH HOH . V 7 HOH B 35 380 93 HOH HOH . V 7 HOH B 36 381 94 HOH HOH . V 7 HOH B 37 382 100 HOH HOH . V 7 HOH B 38 383 101 HOH HOH . V 7 HOH B 39 384 105 HOH HOH . V 7 HOH B 40 385 109 HOH HOH . V 7 HOH B 41 386 110 HOH HOH . V 7 HOH B 42 387 114 HOH HOH . V 7 HOH B 43 388 116 HOH HOH . V 7 HOH B 44 389 119 HOH HOH . V 7 HOH B 45 390 138 HOH HOH . V 7 HOH B 46 391 139 HOH HOH . V 7 HOH B 47 392 140 HOH HOH . V 7 HOH B 48 393 141 HOH HOH . V 7 HOH B 49 394 142 HOH HOH . V 7 HOH B 50 395 143 HOH HOH . V 7 HOH B 51 396 144 HOH HOH . V 7 HOH B 52 397 157 HOH HOH . V 7 HOH B 53 398 158 HOH HOH . V 7 HOH B 54 399 159 HOH HOH . V 7 HOH B 55 400 160 HOH HOH . V 7 HOH B 56 401 161 HOH HOH . V 7 HOH B 57 402 162 HOH HOH . W 7 HOH C 1 347 2 HOH HOH . W 7 HOH C 2 348 5 HOH HOH . W 7 HOH C 3 349 7 HOH HOH . W 7 HOH C 4 350 9 HOH HOH . W 7 HOH C 5 351 13 HOH HOH . W 7 HOH C 6 352 14 HOH HOH . W 7 HOH C 7 353 18 HOH HOH . W 7 HOH C 8 354 30 HOH HOH . W 7 HOH C 9 355 38 HOH HOH . W 7 HOH C 10 356 39 HOH HOH . W 7 HOH C 11 357 41 HOH HOH . W 7 HOH C 12 358 42 HOH HOH . W 7 HOH C 13 359 43 HOH HOH . W 7 HOH C 14 360 45 HOH HOH . W 7 HOH C 15 361 47 HOH HOH . W 7 HOH C 16 362 48 HOH HOH . W 7 HOH C 17 363 49 HOH HOH . W 7 HOH C 18 364 55 HOH HOH . W 7 HOH C 19 365 56 HOH HOH . W 7 HOH C 20 366 59 HOH HOH . W 7 HOH C 21 367 68 HOH HOH . W 7 HOH C 22 368 71 HOH HOH . W 7 HOH C 23 369 75 HOH HOH . W 7 HOH C 24 370 82 HOH HOH . W 7 HOH C 25 371 85 HOH HOH . W 7 HOH C 26 372 86 HOH HOH . W 7 HOH C 27 373 88 HOH HOH . W 7 HOH C 28 374 92 HOH HOH . W 7 HOH C 29 375 102 HOH HOH . W 7 HOH C 30 376 103 HOH HOH . W 7 HOH C 31 377 107 HOH HOH . W 7 HOH C 32 378 112 HOH HOH . W 7 HOH C 33 379 113 HOH HOH . W 7 HOH C 34 380 118 HOH HOH . W 7 HOH C 35 381 145 HOH HOH . W 7 HOH C 36 382 146 HOH HOH . W 7 HOH C 37 383 147 HOH HOH . W 7 HOH C 38 384 148 HOH HOH . W 7 HOH C 39 385 149 HOH HOH . W 7 HOH C 40 386 163 HOH HOH . W 7 HOH C 41 387 164 HOH HOH . W 7 HOH C 42 388 165 HOH HOH . X 7 HOH D 1 349 1 HOH HOH . X 7 HOH D 2 350 4 HOH HOH . X 7 HOH D 3 351 8 HOH HOH . X 7 HOH D 4 352 20 HOH HOH . X 7 HOH D 5 353 23 HOH HOH . X 7 HOH D 6 354 26 HOH HOH . X 7 HOH D 7 355 32 HOH HOH . X 7 HOH D 8 356 33 HOH HOH . X 7 HOH D 9 357 36 HOH HOH . X 7 HOH D 10 358 44 HOH HOH . X 7 HOH D 11 359 50 HOH HOH . X 7 HOH D 12 360 52 HOH HOH . X 7 HOH D 13 361 53 HOH HOH . X 7 HOH D 14 362 54 HOH HOH . X 7 HOH D 15 363 58 HOH HOH . X 7 HOH D 16 364 61 HOH HOH . X 7 HOH D 17 365 69 HOH HOH . X 7 HOH D 18 366 70 HOH HOH . X 7 HOH D 19 367 78 HOH HOH . X 7 HOH D 20 368 97 HOH HOH . X 7 HOH D 21 369 106 HOH HOH . X 7 HOH D 22 370 108 HOH HOH . X 7 HOH D 23 371 111 HOH HOH . X 7 HOH D 24 372 121 HOH HOH . X 7 HOH D 25 373 124 HOH HOH . X 7 HOH D 26 374 125 HOH HOH . X 7 HOH D 27 375 126 HOH HOH . X 7 HOH D 28 376 127 HOH HOH . X 7 HOH D 29 377 150 HOH HOH . X 7 HOH D 30 378 151 HOH HOH . X 7 HOH D 31 379 152 HOH HOH . X 7 HOH D 32 380 180 HOH HOH . X 7 HOH D 33 381 181 HOH HOH . X 7 HOH D 34 382 182 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 6 _atom_site.Cartn_x -3.908 _atom_site.Cartn_y -58.458 _atom_site.Cartn_z -4.129 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 345 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #