data_3LU6 # _model_server_result.job_id y0KIuwm0RWTH6MzKp92zgw _model_server_result.datetime_utc '2024-11-15 15:41:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":586}' # _entry.id 3LU6 # _exptl.entry_id 3LU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.359 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R,2R)-2-{[(5-fluoro-1H-indol-2-yl)carbonyl]amino}-2,3-dihydro-1H-inden-1-yl]acetic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.51 _cell.angle_beta 86.57 _cell.angle_gamma 74.47 _cell.entry_id 3LU6 _cell.length_a 58.561 _cell.length_b 59.868 _cell.length_c 95.573 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C20 H17 F N2 O3' _chem_comp.formula_weight 352.359 _chem_comp.id IMX _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R,2R)-2-{[(5-fluoro-1H-indol-2-yl)carbonyl]amino}-2,3-dihydro-1H-inden-1-yl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N14 IMX sing 173 n n C1 C15 IMX sing 174 n n C1 C18 IMX sing 175 n n C2 C3 IMX doub 176 n y C2 C4 IMX sing 177 n y C2 C10 IMX sing 178 n y C3 C5 IMX sing 179 n y C3 N8 IMX sing 180 n y C4 C6 IMX doub 181 n y C5 C7 IMX doub 182 n y C6 C7 IMX sing 183 n y C6 F11 IMX sing 184 n n N8 C9 IMX sing 185 n y C9 C10 IMX doub 186 n y C9 C12 IMX sing 187 n n C12 O13 IMX doub 188 n n C12 N14 IMX sing 189 n n C15 C16 IMX sing 190 n n C16 C17 IMX doub 191 n y C16 C19 IMX sing 192 n y C17 C18 IMX sing 193 n n C17 C22 IMX sing 194 n y C18 C23 IMX sing 195 n n C19 C20 IMX doub 196 n y C20 C21 IMX sing 197 n y C21 C22 IMX doub 198 n y C23 C24 IMX sing 199 n n C24 O25 IMX doub 200 n n C24 O26 IMX sing 201 n n C1 H1 IMX sing 202 n n C4 H4 IMX sing 203 n n C5 H5 IMX sing 204 n n C7 H7 IMX sing 205 n n N8 HN8 IMX sing 206 n n C10 H10 IMX sing 207 n n N14 HN14 IMX sing 208 n n C15 H15 IMX sing 209 n n C15 H15A IMX sing 210 n n C18 H18 IMX sing 211 n n C19 H19 IMX sing 212 n n C20 H20 IMX sing 213 n n C21 H21 IMX sing 214 n n C22 H22 IMX sing 215 n n C23 H23 IMX sing 216 n n C23 H23A IMX sing 217 n n O26 H26 IMX sing 218 n n # _atom_sites.entry_id 3LU6 _atom_sites.fract_transf_matrix[1][1] 0.017076 _atom_sites.fract_transf_matrix[1][2] -0.004745 _atom_sites.fract_transf_matrix[1][3] 0.000222 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017336 _atom_sites.fract_transf_matrix[2][3] -0.004687 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMX A 1 586 2 IMX INX . D 2 IMX A 1 587 4 IMX INX . E 2 IMX B 1 586 1 IMX INX . F 2 IMX B 1 587 3 IMX INX . G 3 HOH A 1 588 5 HOH HOH . G 3 HOH A 2 589 6 HOH HOH . G 3 HOH A 3 590 10 HOH HOH . G 3 HOH A 4 591 11 HOH HOH . G 3 HOH A 5 592 12 HOH HOH . G 3 HOH A 6 593 14 HOH HOH . H 3 HOH B 1 588 1 HOH HOH . H 3 HOH B 2 589 2 HOH HOH . H 3 HOH B 3 590 3 HOH HOH . H 3 HOH B 4 591 4 HOH HOH . H 3 HOH B 5 592 7 HOH HOH . H 3 HOH B 6 593 8 HOH HOH . H 3 HOH B 7 594 9 HOH HOH . H 3 HOH B 8 595 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IMX . . . E 2 -4.875 1.503 -23.878 1 58.67 ? C1 IMX 586 B 1 HETATM 2 C C2 IMX . . . E 2 -0.972 -1.883 -20.823 1 53.6 ? C2 IMX 586 B 1 HETATM 3 C C3 IMX . . . E 2 -1.567 -0.991 -19.973 1 58.59 ? C3 IMX 586 B 1 HETATM 4 C C4 IMX . . . E 2 -0.156 -2.886 -20.378 1 52.72 ? C4 IMX 586 B 1 HETATM 5 C C5 IMX . . . E 2 -1.364 -1.074 -18.611 1 62.92 ? C5 IMX 586 B 1 HETATM 6 C C6 IMX . . . E 2 0.055 -2.979 -19.015 1 59.88 ? C6 IMX 586 B 1 HETATM 7 C C7 IMX . . . E 2 -0.539 -2.086 -18.127 1 60.33 ? C7 IMX 586 B 1 HETATM 8 N N8 IMX . . . E 2 -2.315 -0.125 -20.68 1 61.2 ? N8 IMX 586 B 1 HETATM 9 C C9 IMX . . . E 2 -2.201 -0.446 -21.983 1 60.36 ? C9 IMX 586 B 1 HETATM 10 C C10 IMX . . . E 2 -1.37 -1.537 -22.076 1 57.56 ? C10 IMX 586 B 1 HETATM 11 F F11 IMX . . . E 2 0.848 -3.92 -18.535 1 73.67 ? F11 IMX 586 B 1 HETATM 12 C C12 IMX . . . E 2 -2.865 0.258 -23.069 1 63.14 ? C12 IMX 586 B 1 HETATM 13 O O13 IMX . . . E 2 -2.293 0.383 -24.127 1 61.13 ? O13 IMX 586 B 1 HETATM 14 N N14 IMX . . . E 2 -4.125 0.778 -22.85 1 61.52 ? N14 IMX 586 B 1 HETATM 15 C C15 IMX . . . E 2 -4.053 2.645 -24.51 1 58.57 ? C15 IMX 586 B 1 HETATM 16 C C16 IMX . . . E 2 -5.086 3.662 -24.827 1 59.37 ? C16 IMX 586 B 1 HETATM 17 C C17 IMX . . . E 2 -6.265 3.408 -24.18 1 56.66 ? C17 IMX 586 B 1 HETATM 18 C C18 IMX . . . E 2 -6.151 2.177 -23.318 1 52.2 ? C18 IMX 586 B 1 HETATM 19 C C19 IMX . . . E 2 -4.939 4.741 -25.676 1 58.3 ? C19 IMX 586 B 1 HETATM 20 C C20 IMX . . . E 2 -6.025 5.59 -25.853 1 59.78 ? C20 IMX 586 B 1 HETATM 21 C C21 IMX . . . E 2 -7.231 5.352 -25.186 1 57.74 ? C21 IMX 586 B 1 HETATM 22 C C22 IMX . . . E 2 -7.36 4.251 -24.343 1 56.45 ? C22 IMX 586 B 1 HETATM 23 C C23 IMX . . . E 2 -7.36 1.229 -23.369 1 45.51 ? C23 IMX 586 B 1 HETATM 24 C C24 IMX . . . E 2 -7.424 0.287 -22.186 1 44.73 ? C24 IMX 586 B 1 HETATM 25 O O26 IMX . . . E 2 -8.433 -0.332 -21.937 1 46.62 ? O26 IMX 586 B 1 HETATM 26 O O25 IMX . . . E 2 -6.364 0.112 -21.367 1 43.15 ? O25 IMX 586 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #