data_3LU7
#
_model_server_result.job_id            0FfBAXA0ck2LoeXbgoB_ww 
_model_server_result.datetime_utc      '2024-11-15 13:21:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lu7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":586}' 
#
_entry.id    3LU7 
#
_exptl.entry_id    3LU7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              380.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[(1R,2R)-2-{[(5-fluoro-1H-indol-2-yl)carbonyl]amino}-2,3-dihydro-1H-inden-1-yl]butanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         75.3 
_cell.angle_beta          87.86 
_cell.angle_gamma         75.51 
_cell.entry_id            3LU7 
_cell.length_a            58.541 
_cell.length_b            59.185 
_cell.length_c            95.603 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LU7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C22 H21 F N2 O3' 
_chem_comp.formula_weight    380.412 
_chem_comp.id                IPX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[(1R,2R)-2-{[(5-fluoro-1H-indol-2-yl)carbonyl]amino}-2,3-dihydro-1H-inden-1-yl]butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N14 IPX sing 173 n n 
C1 C15 IPX sing 174 n n 
C1 C18 IPX sing 175 n n 
C2 C3 IPX doub 176 n y 
C2 C4 IPX sing 177 n y 
C2 C10 IPX sing 178 n y 
C3 C5 IPX sing 179 n y 
C3 N8 IPX sing 180 n y 
C4 C6 IPX doub 181 n y 
C5 C7 IPX doub 182 n y 
C6 C7 IPX sing 183 n y 
C6 F11 IPX sing 184 n n 
N8 C9 IPX sing 185 n y 
C9 C10 IPX doub 186 n y 
C9 C12 IPX sing 187 n n 
C12 O13 IPX doub 188 n n 
C12 N14 IPX sing 189 n n 
C15 C16 IPX sing 190 n n 
C16 C17 IPX doub 191 n y 
C16 C19 IPX sing 192 n y 
C17 C18 IPX sing 193 n n 
C17 C22 IPX sing 194 n y 
C18 C23 IPX sing 195 n n 
C19 C20 IPX doub 196 n y 
C20 C21 IPX sing 197 n y 
C21 C22 IPX doub 198 n y 
C23 C24 IPX sing 199 n n 
C24 C25 IPX sing 200 n n 
C25 C26 IPX sing 201 n n 
C26 O27 IPX doub 202 n n 
C26 O28 IPX sing 203 n n 
C1 H1 IPX sing 204 n n 
C4 H4 IPX sing 205 n n 
C5 H5 IPX sing 206 n n 
C7 H7 IPX sing 207 n n 
N8 HN8 IPX sing 208 n n 
C10 H10 IPX sing 209 n n 
N14 HN14 IPX sing 210 n n 
C15 H15 IPX sing 211 n n 
C15 H15A IPX sing 212 n n 
C18 H18 IPX sing 213 n n 
C19 H19 IPX sing 214 n n 
C20 H20 IPX sing 215 n n 
C21 H21 IPX sing 216 n n 
C22 H22 IPX sing 217 n n 
C23 H23 IPX sing 218 n n 
C23 H23A IPX sing 219 n n 
C24 H24 IPX sing 220 n n 
C24 H24A IPX sing 221 n n 
C25 H25 IPX sing 222 n n 
C25 H25A IPX sing 223 n n 
O28 H28 IPX sing 224 n n 
#
_atom_sites.entry_id                     3LU7 
_atom_sites.fract_transf_matrix[1][1]    0.017082 
_atom_sites.fract_transf_matrix[1][2]    -0.004414 
_atom_sites.fract_transf_matrix[1][3]    0.000493 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017451 
_atom_sites.fract_transf_matrix[2][3]    -0.004556 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IPX A 1 586 1 IPX INX . 
D 3 PO4 A 1 587 1 PO4 PO4 . 
E 3 PO4 A 1 588 4 PO4 PO4 . 
F 3 PO4 A 1 589 5 PO4 PO4 . 
G 2 IPX B 1 586 2 IPX INX . 
H 3 PO4 B 1 587 2 PO4 PO4 . 
I 3 PO4 B 1 588 3 PO4 PO4 . 
J 4 HOH A 1 590 2 HOH HOH . 
K 4 HOH B 1 589 1 HOH HOH . 
K 4 HOH B 2 590 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IPX . . . C 2 11.681 -4.569 0.758 1 79.79 ? C1 IPX 586 A 1 
HETATM 2 C C2 IPX . . . C 2 10.062 -1.287 -4.003 1 66.77 ? C2 IPX 586 A 1 
HETATM 3 C C3 IPX . . . C 2 9.56 -0.71 -2.864 1 65.43 ? C3 IPX 586 A 1 
HETATM 4 C C4 IPX . . . C 2 9.685 -0.875 -5.259 1 66.08 ? C4 IPX 586 A 1 
HETATM 5 C C5 IPX . . . C 2 8.644 0.322 -2.934 1 66.31 ? C5 IPX 586 A 1 
HETATM 6 C C6 IPX . . . C 2 8.767 0.167 -5.348 1 63.9 ? C6 IPX 586 A 1 
HETATM 7 C C7 IPX . . . C 2 8.252 0.765 -4.196 1 66.46 ? C7 IPX 586 A 1 
HETATM 8 N N8 IPX . . . C 2 10.102 -1.314 -1.794 1 65.36 ? N8 IPX 586 A 1 
HETATM 9 C C9 IPX . . . C 2 10.952 -2.268 -2.222 1 67.25 ? C9 IPX 586 A 1 
HETATM 10 C C10 IPX . . . C 2 10.917 -2.263 -3.592 1 67.38 ? C10 IPX 586 A 1 
HETATM 11 F F11 IPX . . . C 2 8.378 0.592 -6.54 1 64.78 ? F11 IPX 586 A 1 
HETATM 12 C C12 IPX . . . C 2 11.704 -3.187 -1.382 1 67.25 ? C12 IPX 586 A 1 
HETATM 13 O O13 IPX . . . C 2 12.784 -3.58 -1.729 1 60.53 ? O13 IPX 586 A 1 
HETATM 14 N N14 IPX . . . C 2 11.113 -3.617 -0.207 1 80.84 ? N14 IPX 586 A 1 
HETATM 15 C C15 IPX . . . C 2 13.166 -4.352 1.147 1 79.47 ? C15 IPX 586 A 1 
HETATM 16 C C16 IPX . . . C 2 13.677 -5.751 1.239 1 79.77 ? C16 IPX 586 A 1 
HETATM 17 C C17 IPX . . . C 2 12.809 -6.658 0.691 1 81.92 ? C17 IPX 586 A 1 
HETATM 18 C C18 IPX . . . C 2 11.578 -5.991 0.142 1 80.28 ? C18 IPX 586 A 1 
HETATM 19 C C19 IPX . . . C 2 14.877 -6.173 1.784 1 81.96 ? C19 IPX 586 A 1 
HETATM 20 C C20 IPX . . . C 2 15.188 -7.532 1.782 1 80.83 ? C20 IPX 586 A 1 
HETATM 21 C C21 IPX . . . C 2 14.309 -8.454 1.225 1 80.45 ? C21 IPX 586 A 1 
HETATM 22 C C22 IPX . . . C 2 13.112 -8.016 0.671 1 83.15 ? C22 IPX 586 A 1 
HETATM 23 C C23 IPX . . . C 2 10.221 -6.605 0.542 1 76.22 ? C23 IPX 586 A 1 
HETATM 24 C C24 IPX . . . C 2 9.286 -6.851 -0.638 1 78.07 ? C24 IPX 586 A 1 
HETATM 25 C C25 IPX . . . C 2 8.305 -7.97 -0.319 1 78.23 ? C25 IPX 586 A 1 
HETATM 26 C C26 IPX . . . C 2 8.869 -9.303 -0.723 1 80.12 ? C26 IPX 586 A 1 
HETATM 27 O O27 IPX . . . C 2 8.976 -9.554 -1.9 1 74.64 ? O27 IPX 586 A 1 
HETATM 28 O O28 IPX . . . C 2 9.252 -10.214 0.218 1 79.21 ? O28 IPX 586 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#