data_3LUD # _model_server_result.job_id O1XQJtcXRdHBR3e6IxIgGw _model_server_result.datetime_utc '2024-11-15 02:17:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":9}' # _entry.id 3LUD # _exptl.entry_id 3LUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.36 _cell.angle_beta 72.71 _cell.angle_gamma 83.59 _cell.entry_id 3LUD _cell.length_a 40.521 _cell.length_b 47.387 _cell.length_c 66.388 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,M 1 1 B,F,G,N 2 1 C,H,I,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 299 n n P O2 PO4 sing 300 n n P O3 PO4 sing 301 n n P O4 PO4 sing 302 n n # _atom_sites.entry_id 3LUD _atom_sites.fract_transf_matrix[1][1] 0.024679 _atom_sites.fract_transf_matrix[1][2] -0.002773 _atom_sites.fract_transf_matrix[1][3] -0.007597 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021236 _atom_sites.fract_transf_matrix[2][3] -0.000679 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 AMP A 1 600 600 AMP AMP . E 3 PO4 A 1 9 9 PO4 PO4 . F 2 AMP B 1 600 600 AMP AMP . G 3 PO4 B 1 4 4 PO4 PO4 . H 2 AMP C 1 600 600 AMP AMP . I 3 PO4 C 1 5 5 PO4 PO4 . J 3 PO4 C 1 8 8 PO4 PO4 . K 3 PO4 C 1 10 10 PO4 PO4 . L 3 PO4 C 1 11 11 PO4 PO4 . M 4 HOH A 1 2 2 HOH HOH . M 4 HOH A 2 3 3 HOH HOH . M 4 HOH A 3 4 4 HOH HOH . M 4 HOH A 4 6 6 HOH HOH . M 4 HOH A 5 7 7 HOH HOH . M 4 HOH A 6 12 12 HOH HOH . M 4 HOH A 7 13 13 HOH HOH . M 4 HOH A 8 15 15 HOH HOH . M 4 HOH A 9 18 18 HOH HOH . M 4 HOH A 10 19 19 HOH HOH . M 4 HOH A 11 21 21 HOH HOH . M 4 HOH A 12 22 22 HOH HOH . M 4 HOH A 13 23 23 HOH HOH . M 4 HOH A 14 26 26 HOH HOH . M 4 HOH A 15 27 27 HOH HOH . M 4 HOH A 16 28 28 HOH HOH . M 4 HOH A 17 32 32 HOH HOH . M 4 HOH A 18 36 36 HOH HOH . M 4 HOH A 19 38 38 HOH HOH . M 4 HOH A 20 41 41 HOH HOH . M 4 HOH A 21 44 44 HOH HOH . M 4 HOH A 22 45 45 HOH HOH . M 4 HOH A 23 46 46 HOH HOH . M 4 HOH A 24 49 49 HOH HOH . M 4 HOH A 25 50 50 HOH HOH . M 4 HOH A 26 51 51 HOH HOH . M 4 HOH A 27 54 54 HOH HOH . M 4 HOH A 28 57 57 HOH HOH . M 4 HOH A 29 60 60 HOH HOH . M 4 HOH A 30 63 63 HOH HOH . M 4 HOH A 31 64 64 HOH HOH . M 4 HOH A 32 65 65 HOH HOH . M 4 HOH A 33 69 69 HOH HOH . M 4 HOH A 34 70 70 HOH HOH . M 4 HOH A 35 74 74 HOH HOH . M 4 HOH A 36 75 75 HOH HOH . M 4 HOH A 37 79 79 HOH HOH . M 4 HOH A 38 81 81 HOH HOH . M 4 HOH A 39 82 82 HOH HOH . M 4 HOH A 40 83 83 HOH HOH . M 4 HOH A 41 84 84 HOH HOH . M 4 HOH A 42 85 85 HOH HOH . M 4 HOH A 43 88 88 HOH HOH . M 4 HOH A 44 89 89 HOH HOH . M 4 HOH A 45 90 90 HOH HOH . M 4 HOH A 46 92 92 HOH HOH . M 4 HOH A 47 94 94 HOH HOH . M 4 HOH A 48 97 97 HOH HOH . M 4 HOH A 49 99 99 HOH HOH . M 4 HOH A 50 104 104 HOH HOH . M 4 HOH A 51 105 105 HOH HOH . M 4 HOH A 52 106 106 HOH HOH . M 4 HOH A 53 107 107 HOH HOH . M 4 HOH A 54 110 110 HOH HOH . M 4 HOH A 55 111 111 HOH HOH . M 4 HOH A 56 112 112 HOH HOH . M 4 HOH A 57 116 116 HOH HOH . M 4 HOH A 58 119 119 HOH HOH . M 4 HOH A 59 120 120 HOH HOH . M 4 HOH A 60 121 121 HOH HOH . M 4 HOH A 61 122 122 HOH HOH . M 4 HOH A 62 123 123 HOH HOH . M 4 HOH A 63 124 124 HOH HOH . M 4 HOH A 64 125 125 HOH HOH . M 4 HOH A 65 131 131 HOH HOH . M 4 HOH A 66 133 133 HOH HOH . M 4 HOH A 67 135 135 HOH HOH . M 4 HOH A 68 136 136 HOH HOH . M 4 HOH A 69 137 137 HOH HOH . M 4 HOH A 70 138 138 HOH HOH . M 4 HOH A 71 139 139 HOH HOH . M 4 HOH A 72 140 140 HOH HOH . M 4 HOH A 73 141 141 HOH HOH . M 4 HOH A 74 142 142 HOH HOH . M 4 HOH A 75 143 143 HOH HOH . M 4 HOH A 76 144 144 HOH HOH . M 4 HOH A 77 145 145 HOH HOH . M 4 HOH A 78 147 147 HOH HOH . M 4 HOH A 79 148 148 HOH HOH . M 4 HOH A 80 149 149 HOH HOH . M 4 HOH A 81 150 150 HOH HOH . M 4 HOH A 82 151 151 HOH HOH . M 4 HOH A 83 156 156 HOH HOH . M 4 HOH A 84 157 157 HOH HOH . M 4 HOH A 85 158 158 HOH HOH . M 4 HOH A 86 172 172 HOH HOH . M 4 HOH A 87 173 173 HOH HOH . M 4 HOH A 88 174 174 HOH HOH . M 4 HOH A 89 175 175 HOH HOH . M 4 HOH A 90 176 176 HOH HOH . M 4 HOH A 91 178 178 HOH HOH . M 4 HOH A 92 182 182 HOH HOH . M 4 HOH A 93 186 186 HOH HOH . M 4 HOH A 94 191 191 HOH HOH . M 4 HOH A 95 192 192 HOH HOH . M 4 HOH A 96 193 193 HOH HOH . M 4 HOH A 97 197 197 HOH HOH . M 4 HOH A 98 199 199 HOH HOH . M 4 HOH A 99 200 200 HOH HOH . M 4 HOH A 100 201 201 HOH HOH . M 4 HOH A 101 202 202 HOH HOH . M 4 HOH A 102 204 204 HOH HOH . M 4 HOH A 103 208 208 HOH HOH . M 4 HOH A 104 209 209 HOH HOH . M 4 HOH A 105 212 212 HOH HOH . M 4 HOH A 106 214 214 HOH HOH . M 4 HOH A 107 216 216 HOH HOH . M 4 HOH A 108 217 217 HOH HOH . M 4 HOH A 109 220 220 HOH HOH . M 4 HOH A 110 221 221 HOH HOH . M 4 HOH A 111 222 222 HOH HOH . M 4 HOH A 112 230 230 HOH HOH . M 4 HOH A 113 231 231 HOH HOH . M 4 HOH A 114 233 233 HOH HOH . M 4 HOH A 115 234 234 HOH HOH . M 4 HOH A 116 235 235 HOH HOH . M 4 HOH A 117 236 236 HOH HOH . M 4 HOH A 118 237 237 HOH HOH . M 4 HOH A 119 238 238 HOH HOH . M 4 HOH A 120 239 239 HOH HOH . M 4 HOH A 121 240 240 HOH HOH . M 4 HOH A 122 241 241 HOH HOH . M 4 HOH A 123 242 242 HOH HOH . M 4 HOH A 124 247 247 HOH HOH . M 4 HOH A 125 248 248 HOH HOH . M 4 HOH A 126 250 250 HOH HOH . M 4 HOH A 127 256 256 HOH HOH . M 4 HOH A 128 259 259 HOH HOH . M 4 HOH A 129 260 260 HOH HOH . M 4 HOH A 130 576 9 HOH HOH . N 4 HOH B 1 1 1 HOH HOH . N 4 HOH B 2 5 5 HOH HOH . N 4 HOH B 3 8 8 HOH HOH . N 4 HOH B 4 14 14 HOH HOH . N 4 HOH B 5 20 20 HOH HOH . N 4 HOH B 6 24 24 HOH HOH . N 4 HOH B 7 33 33 HOH HOH . N 4 HOH B 8 37 37 HOH HOH . N 4 HOH B 9 42 42 HOH HOH . N 4 HOH B 10 48 48 HOH HOH . N 4 HOH B 11 55 55 HOH HOH . N 4 HOH B 12 58 58 HOH HOH . N 4 HOH B 13 59 59 HOH HOH . N 4 HOH B 14 61 61 HOH HOH . N 4 HOH B 15 67 67 HOH HOH . N 4 HOH B 16 68 68 HOH HOH . N 4 HOH B 17 73 73 HOH HOH . N 4 HOH B 18 76 76 HOH HOH . N 4 HOH B 19 78 78 HOH HOH . N 4 HOH B 20 80 80 HOH HOH . N 4 HOH B 21 93 93 HOH HOH . N 4 HOH B 22 100 100 HOH HOH . N 4 HOH B 23 101 101 HOH HOH . N 4 HOH B 24 102 102 HOH HOH . N 4 HOH B 25 109 109 HOH HOH . N 4 HOH B 26 113 113 HOH HOH . N 4 HOH B 27 114 114 HOH HOH . N 4 HOH B 28 115 115 HOH HOH . N 4 HOH B 29 126 126 HOH HOH . N 4 HOH B 30 132 132 HOH HOH . N 4 HOH B 31 134 134 HOH HOH . N 4 HOH B 32 146 146 HOH HOH . N 4 HOH B 33 152 152 HOH HOH . N 4 HOH B 34 153 153 HOH HOH . N 4 HOH B 35 159 159 HOH HOH . N 4 HOH B 36 160 160 HOH HOH . N 4 HOH B 37 161 161 HOH HOH . N 4 HOH B 38 165 165 HOH HOH . N 4 HOH B 39 169 169 HOH HOH . N 4 HOH B 40 170 170 HOH HOH . N 4 HOH B 41 171 171 HOH HOH . N 4 HOH B 42 180 180 HOH HOH . N 4 HOH B 43 181 181 HOH HOH . N 4 HOH B 44 183 183 HOH HOH . N 4 HOH B 45 195 195 HOH HOH . N 4 HOH B 46 198 198 HOH HOH . N 4 HOH B 47 206 206 HOH HOH . N 4 HOH B 48 207 207 HOH HOH . N 4 HOH B 49 210 210 HOH HOH . N 4 HOH B 50 211 211 HOH HOH . N 4 HOH B 51 213 213 HOH HOH . N 4 HOH B 52 218 218 HOH HOH . N 4 HOH B 53 219 219 HOH HOH . N 4 HOH B 54 224 224 HOH HOH . N 4 HOH B 55 225 225 HOH HOH . N 4 HOH B 56 254 254 HOH HOH . N 4 HOH B 57 255 255 HOH HOH . N 4 HOH B 58 262 262 HOH HOH . N 4 HOH B 59 263 263 HOH HOH . O 4 HOH C 1 16 16 HOH HOH . O 4 HOH C 2 17 17 HOH HOH . O 4 HOH C 3 25 25 HOH HOH . O 4 HOH C 4 29 29 HOH HOH . O 4 HOH C 5 30 30 HOH HOH . O 4 HOH C 6 31 31 HOH HOH . O 4 HOH C 7 34 34 HOH HOH . O 4 HOH C 8 35 35 HOH HOH . O 4 HOH C 9 39 39 HOH HOH . O 4 HOH C 10 40 40 HOH HOH . O 4 HOH C 11 43 43 HOH HOH . O 4 HOH C 12 47 47 HOH HOH . O 4 HOH C 13 52 52 HOH HOH . O 4 HOH C 14 53 53 HOH HOH . O 4 HOH C 15 56 56 HOH HOH . O 4 HOH C 16 62 62 HOH HOH . O 4 HOH C 17 66 66 HOH HOH . O 4 HOH C 18 71 71 HOH HOH . O 4 HOH C 19 72 72 HOH HOH . O 4 HOH C 20 77 77 HOH HOH . O 4 HOH C 21 86 86 HOH HOH . O 4 HOH C 22 87 87 HOH HOH . O 4 HOH C 23 91 91 HOH HOH . O 4 HOH C 24 95 95 HOH HOH . O 4 HOH C 25 96 96 HOH HOH . O 4 HOH C 26 98 98 HOH HOH . O 4 HOH C 27 103 103 HOH HOH . O 4 HOH C 28 108 108 HOH HOH . O 4 HOH C 29 117 117 HOH HOH . O 4 HOH C 30 118 118 HOH HOH . O 4 HOH C 31 127 127 HOH HOH . O 4 HOH C 32 128 128 HOH HOH . O 4 HOH C 33 129 129 HOH HOH . O 4 HOH C 34 130 130 HOH HOH . O 4 HOH C 35 154 154 HOH HOH . O 4 HOH C 36 155 155 HOH HOH . O 4 HOH C 37 162 162 HOH HOH . O 4 HOH C 38 163 163 HOH HOH . O 4 HOH C 39 164 164 HOH HOH . O 4 HOH C 40 166 166 HOH HOH . O 4 HOH C 41 167 167 HOH HOH . O 4 HOH C 42 168 168 HOH HOH . O 4 HOH C 43 177 177 HOH HOH . O 4 HOH C 44 179 179 HOH HOH . O 4 HOH C 45 184 184 HOH HOH . O 4 HOH C 46 185 185 HOH HOH . O 4 HOH C 47 187 187 HOH HOH . O 4 HOH C 48 188 188 HOH HOH . O 4 HOH C 49 189 189 HOH HOH . O 4 HOH C 50 190 190 HOH HOH . O 4 HOH C 51 194 194 HOH HOH . O 4 HOH C 52 196 196 HOH HOH . O 4 HOH C 53 203 203 HOH HOH . O 4 HOH C 54 205 205 HOH HOH . O 4 HOH C 55 215 215 HOH HOH . O 4 HOH C 56 223 223 HOH HOH . O 4 HOH C 57 226 226 HOH HOH . O 4 HOH C 58 227 227 HOH HOH . O 4 HOH C 59 228 228 HOH HOH . O 4 HOH C 60 229 229 HOH HOH . O 4 HOH C 61 232 232 HOH HOH . O 4 HOH C 62 243 243 HOH HOH . O 4 HOH C 63 244 244 HOH HOH . O 4 HOH C 64 245 245 HOH HOH . O 4 HOH C 65 246 246 HOH HOH . O 4 HOH C 66 249 249 HOH HOH . O 4 HOH C 67 251 251 HOH HOH . O 4 HOH C 68 252 252 HOH HOH . O 4 HOH C 69 253 253 HOH HOH . O 4 HOH C 70 257 257 HOH HOH . O 4 HOH C 71 258 258 HOH HOH . O 4 HOH C 72 261 261 HOH HOH . O 4 HOH C 73 576 10 HOH HOH . O 4 HOH C 74 577 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 3 15.193 -9.57 -27.688 1 83.55 ? P PO4 9 A 1 HETATM 2 O O1 PO4 . . . E 3 16.415 -9.304 -28.532 1 86.78 ? O1 PO4 9 A 1 HETATM 3 O O2 PO4 . . . E 3 14.328 -8.332 -27.65 1 82.37 ? O2 PO4 9 A 1 HETATM 4 O O3 PO4 . . . E 3 14.402 -10.715 -28.269 1 82.82 ? O3 PO4 9 A 1 HETATM 5 O O4 PO4 . . . E 3 15.635 -9.935 -26.295 1 82.68 ? O4 PO4 9 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 437 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #