data_3LUP # _model_server_result.job_id FRXNurBpFmmyhJh08HhoAg _model_server_result.datetime_utc '2025-03-25 16:00:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3LUP # _exptl.entry_id 3LUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LUP _cell.length_a 39.321 _cell.length_b 84.205 _cell.length_c 87.541 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N LYS 5 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C LEU 135 A LEU 132 1_555 A N MSE 136 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 136 A MSE 133 1_555 A N CYS 137 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C GLY 141 A GLY 138 1_555 A N MSE 142 A MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 142 A MSE 139 1_555 A N ASP 143 A ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C GLU 223 A GLU 220 1_555 A N MSE 224 A MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 224 A MSE 221 1_555 A N THR 225 A THR 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 182 n n C1 C2 GOL sing 183 n n C1 H11 GOL sing 184 n n C1 H12 GOL sing 185 n n O1 HO1 GOL sing 186 n n C2 O2 GOL sing 187 n n C2 C3 GOL sing 188 n n C2 H2 GOL sing 189 n n O2 HO2 GOL sing 190 n n C3 O3 GOL sing 191 n n C3 H31 GOL sing 192 n n C3 H32 GOL sing 193 n n O3 HO3 GOL sing 194 n n # _atom_sites.entry_id 3LUP _atom_sites.fract_transf_matrix[1][1] 0.025432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ELA A 1 301 301 ELA ELA . C 3 GOL A 1 302 302 GOL GOL . D 4 HOH A 1 283 1 HOH HOH . D 4 HOH A 2 284 2 HOH HOH . D 4 HOH A 3 285 3 HOH HOH . D 4 HOH A 4 286 4 HOH HOH . D 4 HOH A 5 287 5 HOH HOH . D 4 HOH A 6 288 6 HOH HOH . D 4 HOH A 7 289 7 HOH HOH . D 4 HOH A 8 290 8 HOH HOH . D 4 HOH A 9 291 9 HOH HOH . D 4 HOH A 10 292 10 HOH HOH . D 4 HOH A 11 293 11 HOH HOH . D 4 HOH A 12 294 12 HOH HOH . D 4 HOH A 13 295 13 HOH HOH . D 4 HOH A 14 296 14 HOH HOH . D 4 HOH A 15 297 15 HOH HOH . D 4 HOH A 16 298 16 HOH HOH . D 4 HOH A 17 299 17 HOH HOH . D 4 HOH A 18 300 18 HOH HOH . D 4 HOH A 19 303 19 HOH HOH . D 4 HOH A 20 304 20 HOH HOH . D 4 HOH A 21 305 21 HOH HOH . D 4 HOH A 22 306 22 HOH HOH . D 4 HOH A 23 307 23 HOH HOH . D 4 HOH A 24 308 24 HOH HOH . D 4 HOH A 25 309 25 HOH HOH . D 4 HOH A 26 310 26 HOH HOH . D 4 HOH A 27 311 27 HOH HOH . D 4 HOH A 28 312 28 HOH HOH . D 4 HOH A 29 313 29 HOH HOH . D 4 HOH A 30 314 30 HOH HOH . D 4 HOH A 31 315 31 HOH HOH . D 4 HOH A 32 316 32 HOH HOH . D 4 HOH A 33 317 33 HOH HOH . D 4 HOH A 34 318 34 HOH HOH . D 4 HOH A 35 319 35 HOH HOH . D 4 HOH A 36 320 36 HOH HOH . D 4 HOH A 37 321 37 HOH HOH . D 4 HOH A 38 322 38 HOH HOH . D 4 HOH A 39 323 39 HOH HOH . D 4 HOH A 40 324 40 HOH HOH . D 4 HOH A 41 325 41 HOH HOH . D 4 HOH A 42 326 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 3.906 47.042 13.632 1 65.2 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 3.431 45.858 13.022 1 65.75 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 5.121 46.675 14.473 1 65.13 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 6.18 46.249 13.645 1 65.41 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 5.572 47.869 15.296 1 64.86 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 5.036 47.763 16.597 1 64.22 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #