data_3LUY # _model_server_result.job_id '_h_tAvmUSvQBQfivFP4I5A' _model_server_result.datetime_utc '2024-12-02 09:50:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3luy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3LUY # _exptl.entry_id 3LUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHENYLPYRUVIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LUY _cell.length_a 99.954 _cell.length_b 59.198 _cell.length_c 63.172 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 199.908 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N SER 5 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C LEU 40 A LEU 37 1_555 A N MSE 41 A MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C MSE 41 A MSE 38 1_555 A N PRO 42 A PRO 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale4 A C PRO 42 A PRO 39 1_555 A N MSE 43 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C MSE 43 A MSE 40 1_555 A N ASP 44 A ASP 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C ASN 235 A ASN 232 1_555 A N MSE 236 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale7 A C MSE 236 A MSE 233 1_555 A N THR 237 A THR 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C TRP 299 A TRP 296 1_555 A N MSE 300 A MSE 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale9 A C MSE 300 A MSE 297 1_555 A N LEU 301 A LEU 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 A C LEU 327 A LEU 324 1_555 A N MSE 328 A MSE 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 A C MSE 328 A MSE 325 1_555 A N TRP 329 A TRP 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C9 H8 O3' _chem_comp.formula_weight 164.158 _chem_comp.id PPY _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHENYLPYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PPY doub 260 n n C1 O2 PPY sing 261 n n C1 C2 PPY sing 262 n n O2 HO2 PPY sing 263 n n C2 O3 PPY doub 264 n n C2 C3 PPY sing 265 n n C3 C1' PPY sing 266 n n C3 H31 PPY sing 267 n n C3 H32 PPY sing 268 n n C1' C2' PPY doub 269 n y C1' C6' PPY sing 270 n y C2' C3' PPY sing 271 n y C2' H2' PPY sing 272 n n C3' C4' PPY doub 273 n y C3' H3' PPY sing 274 n n C4' C5' PPY sing 275 n y C4' H4' PPY sing 276 n n C5' C6' PPY doub 277 n y C5' H5' PPY sing 278 n n C6' H6' PPY sing 279 n n # _atom_sites.entry_id 3LUY _atom_sites.fract_transf_matrix[1][1] 0.010005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PPY A 1 501 501 PPY PPY . C 3 HOH A 1 327 1 HOH HOH . C 3 HOH A 2 328 2 HOH HOH . C 3 HOH A 3 329 3 HOH HOH . C 3 HOH A 4 330 4 HOH HOH . C 3 HOH A 5 331 5 HOH HOH . C 3 HOH A 6 332 6 HOH HOH . C 3 HOH A 7 333 7 HOH HOH . C 3 HOH A 8 334 8 HOH HOH . C 3 HOH A 9 335 9 HOH HOH . C 3 HOH A 10 336 10 HOH HOH . C 3 HOH A 11 337 11 HOH HOH . C 3 HOH A 12 338 12 HOH HOH . C 3 HOH A 13 339 13 HOH HOH . C 3 HOH A 14 340 14 HOH HOH . C 3 HOH A 15 341 15 HOH HOH . C 3 HOH A 16 342 16 HOH HOH . C 3 HOH A 17 343 17 HOH HOH . C 3 HOH A 18 344 18 HOH HOH . C 3 HOH A 19 345 19 HOH HOH . C 3 HOH A 20 346 20 HOH HOH . C 3 HOH A 21 347 21 HOH HOH . C 3 HOH A 22 348 22 HOH HOH . C 3 HOH A 23 349 23 HOH HOH . C 3 HOH A 24 350 24 HOH HOH . C 3 HOH A 25 351 25 HOH HOH . C 3 HOH A 26 352 26 HOH HOH . C 3 HOH A 27 353 27 HOH HOH . C 3 HOH A 28 354 28 HOH HOH . C 3 HOH A 29 355 29 HOH HOH . C 3 HOH A 30 356 30 HOH HOH . C 3 HOH A 31 357 31 HOH HOH . C 3 HOH A 32 358 32 HOH HOH . C 3 HOH A 33 359 33 HOH HOH . C 3 HOH A 34 360 34 HOH HOH . C 3 HOH A 35 361 35 HOH HOH . C 3 HOH A 36 362 36 HOH HOH . C 3 HOH A 37 363 37 HOH HOH . C 3 HOH A 38 364 38 HOH HOH . C 3 HOH A 39 365 39 HOH HOH . C 3 HOH A 40 366 40 HOH HOH . C 3 HOH A 41 367 41 HOH HOH . C 3 HOH A 42 368 42 HOH HOH . C 3 HOH A 43 369 43 HOH HOH . C 3 HOH A 44 370 44 HOH HOH . C 3 HOH A 45 371 45 HOH HOH . C 3 HOH A 46 372 46 HOH HOH . C 3 HOH A 47 373 47 HOH HOH . C 3 HOH A 48 374 48 HOH HOH . C 3 HOH A 49 375 49 HOH HOH . C 3 HOH A 50 376 50 HOH HOH . C 3 HOH A 51 377 51 HOH HOH . C 3 HOH A 52 378 52 HOH HOH . C 3 HOH A 53 379 53 HOH HOH . C 3 HOH A 54 380 54 HOH HOH . C 3 HOH A 55 381 55 HOH HOH . C 3 HOH A 56 382 56 HOH HOH . C 3 HOH A 57 383 57 HOH HOH . C 3 HOH A 58 384 58 HOH HOH . C 3 HOH A 59 385 59 HOH HOH . C 3 HOH A 60 386 60 HOH HOH . C 3 HOH A 61 387 61 HOH HOH . C 3 HOH A 62 388 62 HOH HOH . C 3 HOH A 63 389 63 HOH HOH . C 3 HOH A 64 390 64 HOH HOH . C 3 HOH A 65 391 65 HOH HOH . C 3 HOH A 66 392 67 HOH HOH . C 3 HOH A 67 393 68 HOH HOH . C 3 HOH A 68 394 69 HOH HOH . C 3 HOH A 69 395 70 HOH HOH . C 3 HOH A 70 396 71 HOH HOH . C 3 HOH A 71 397 72 HOH HOH . C 3 HOH A 72 398 73 HOH HOH . C 3 HOH A 73 399 74 HOH HOH . C 3 HOH A 74 400 75 HOH HOH . C 3 HOH A 75 401 76 HOH HOH . C 3 HOH A 76 402 77 HOH HOH . C 3 HOH A 77 403 78 HOH HOH . C 3 HOH A 78 404 79 HOH HOH . C 3 HOH A 79 405 80 HOH HOH . C 3 HOH A 80 406 81 HOH HOH . C 3 HOH A 81 407 82 HOH HOH . C 3 HOH A 82 408 83 HOH HOH . C 3 HOH A 83 409 84 HOH HOH . C 3 HOH A 84 410 85 HOH HOH . C 3 HOH A 85 411 86 HOH HOH . C 3 HOH A 86 412 87 HOH HOH . C 3 HOH A 87 413 88 HOH HOH . C 3 HOH A 88 414 89 HOH HOH . C 3 HOH A 89 415 90 HOH HOH . C 3 HOH A 90 416 91 HOH HOH . C 3 HOH A 91 417 92 HOH HOH . C 3 HOH A 92 418 93 HOH HOH . C 3 HOH A 93 419 94 HOH HOH . C 3 HOH A 94 420 95 HOH HOH . C 3 HOH A 95 421 96 HOH HOH . C 3 HOH A 96 422 97 HOH HOH . C 3 HOH A 97 423 98 HOH HOH . C 3 HOH A 98 424 99 HOH HOH . C 3 HOH A 99 425 100 HOH HOH . C 3 HOH A 100 426 101 HOH HOH . C 3 HOH A 101 427 102 HOH HOH . C 3 HOH A 102 428 103 HOH HOH . C 3 HOH A 103 429 104 HOH HOH . C 3 HOH A 104 430 105 HOH HOH . C 3 HOH A 105 431 106 HOH HOH . C 3 HOH A 106 432 108 HOH HOH . C 3 HOH A 107 433 109 HOH HOH . C 3 HOH A 108 434 110 HOH HOH . C 3 HOH A 109 435 111 HOH HOH . C 3 HOH A 110 436 112 HOH HOH . C 3 HOH A 111 437 113 HOH HOH . C 3 HOH A 112 438 114 HOH HOH . C 3 HOH A 113 439 116 HOH HOH . C 3 HOH A 114 440 117 HOH HOH . C 3 HOH A 115 441 118 HOH HOH . C 3 HOH A 116 442 119 HOH HOH . C 3 HOH A 117 443 120 HOH HOH . C 3 HOH A 118 444 121 HOH HOH . C 3 HOH A 119 445 122 HOH HOH . C 3 HOH A 120 446 123 HOH HOH . C 3 HOH A 121 447 124 HOH HOH . C 3 HOH A 122 448 125 HOH HOH . C 3 HOH A 123 449 126 HOH HOH . C 3 HOH A 124 450 127 HOH HOH . C 3 HOH A 125 451 128 HOH HOH . C 3 HOH A 126 452 129 HOH HOH . C 3 HOH A 127 453 130 HOH HOH . C 3 HOH A 128 454 131 HOH HOH . C 3 HOH A 129 455 132 HOH HOH . C 3 HOH A 130 456 133 HOH HOH . C 3 HOH A 131 457 134 HOH HOH . C 3 HOH A 132 458 136 HOH HOH . C 3 HOH A 133 459 137 HOH HOH . C 3 HOH A 134 460 138 HOH HOH . C 3 HOH A 135 461 139 HOH HOH . C 3 HOH A 136 462 140 HOH HOH . C 3 HOH A 137 463 141 HOH HOH . C 3 HOH A 138 464 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PPY . . . B 2 107.407 4.146 23.095 1 26.69 ? C1 PPY 501 A 1 HETATM 2 O O1 PPY . . . B 2 106.362 4.14 23.798 1 25.41 ? O1 PPY 501 A 1 HETATM 3 O O2 PPY . . . B 2 108.14 3.109 23.026 1 26.85 ? O2 PPY 501 A 1 HETATM 4 C C2 PPY . . . B 2 107.66 5.202 22.101 1 29.55 ? C2 PPY 501 A 1 HETATM 5 O O3 PPY . . . B 2 108.778 5.431 21.574 1 31.62 ? O3 PPY 501 A 1 HETATM 6 C C3 PPY . . . B 2 106.42 5.713 21.409 1 25.55 ? C3 PPY 501 A 1 HETATM 7 C C1' PPY . . . B 2 106.168 4.825 20.222 1 23.12 ? C1' PPY 501 A 1 HETATM 8 C C2' PPY . . . B 2 106.507 5.218 18.942 1 20.5 ? C2' PPY 501 A 1 HETATM 9 C C3' PPY . . . B 2 106.281 4.407 17.807 1 21.54 ? C3' PPY 501 A 1 HETATM 10 C C4' PPY . . . B 2 105.696 3.154 18.019 1 22.45 ? C4' PPY 501 A 1 HETATM 11 C C5' PPY . . . B 2 105.347 2.771 19.31 1 21.74 ? C5' PPY 501 A 1 HETATM 12 C C6' PPY . . . B 2 105.577 3.59 20.382 1 24.85 ? C6' PPY 501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #