data_3LVS # _model_server_result.job_id ZeNZ5xJd9938XIGVTrELug _model_server_result.datetime_utc '2024-11-12 21:04:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":300}' # _entry.id 3LVS # _exptl.entry_id 3LVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LVS _cell.length_a 54.456 _cell.length_b 89.464 _cell.length_c 132.766 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3LVS _atom_sites.fract_transf_matrix[1][1] 0.018363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 297 2 PO4 PO4 . D 3 GOL A 1 298 1 GOL GOL . E 2 PO4 B 1 297 1 PO4 PO4 . F 2 PO4 B 1 298 3 PO4 PO4 . G 2 PO4 B 1 299 4 PO4 PO4 . H 3 GOL B 1 300 1 GOL GOL . I 4 HOH A 1 299 1 HOH HOH . I 4 HOH A 2 300 2 HOH HOH . I 4 HOH A 3 301 8 HOH HOH . I 4 HOH A 4 302 12 HOH HOH . I 4 HOH A 5 303 25 HOH HOH . I 4 HOH A 6 304 28 HOH HOH . I 4 HOH A 7 305 30 HOH HOH . I 4 HOH A 8 306 32 HOH HOH . I 4 HOH A 9 307 35 HOH HOH . I 4 HOH A 10 308 38 HOH HOH . I 4 HOH A 11 309 40 HOH HOH . I 4 HOH A 12 310 42 HOH HOH . I 4 HOH A 13 311 45 HOH HOH . I 4 HOH A 14 312 57 HOH HOH . I 4 HOH A 15 313 60 HOH HOH . I 4 HOH A 16 314 61 HOH HOH . I 4 HOH A 17 315 63 HOH HOH . I 4 HOH A 18 316 71 HOH HOH . I 4 HOH A 19 317 75 HOH HOH . I 4 HOH A 20 318 78 HOH HOH . I 4 HOH A 21 319 88 HOH HOH . I 4 HOH A 22 320 92 HOH HOH . I 4 HOH A 23 321 101 HOH HOH . I 4 HOH A 24 322 102 HOH HOH . I 4 HOH A 25 323 103 HOH HOH . I 4 HOH A 26 324 104 HOH HOH . I 4 HOH A 27 325 105 HOH HOH . I 4 HOH A 28 326 106 HOH HOH . I 4 HOH A 29 327 107 HOH HOH . I 4 HOH A 30 328 108 HOH HOH . I 4 HOH A 31 329 109 HOH HOH . I 4 HOH A 32 330 110 HOH HOH . I 4 HOH A 33 331 111 HOH HOH . I 4 HOH A 34 332 113 HOH HOH . I 4 HOH A 35 333 114 HOH HOH . I 4 HOH A 36 334 115 HOH HOH . I 4 HOH A 37 335 116 HOH HOH . I 4 HOH A 38 336 123 HOH HOH . I 4 HOH A 39 337 124 HOH HOH . I 4 HOH A 40 338 125 HOH HOH . I 4 HOH A 41 339 126 HOH HOH . I 4 HOH A 42 340 134 HOH HOH . I 4 HOH A 43 341 136 HOH HOH . I 4 HOH A 44 342 139 HOH HOH . I 4 HOH A 45 343 145 HOH HOH . I 4 HOH A 46 344 146 HOH HOH . I 4 HOH A 47 345 147 HOH HOH . I 4 HOH A 48 346 148 HOH HOH . I 4 HOH A 49 347 149 HOH HOH . I 4 HOH A 50 348 150 HOH HOH . I 4 HOH A 51 349 151 HOH HOH . I 4 HOH A 52 350 152 HOH HOH . I 4 HOH A 53 351 153 HOH HOH . I 4 HOH A 54 352 162 HOH HOH . I 4 HOH A 55 353 163 HOH HOH . I 4 HOH A 56 354 166 HOH HOH . J 4 HOH B 1 301 9 HOH HOH . J 4 HOH B 2 302 10 HOH HOH . J 4 HOH B 3 303 13 HOH HOH . J 4 HOH B 4 304 14 HOH HOH . J 4 HOH B 5 305 16 HOH HOH . J 4 HOH B 6 306 20 HOH HOH . J 4 HOH B 7 307 22 HOH HOH . J 4 HOH B 8 308 23 HOH HOH . J 4 HOH B 9 309 26 HOH HOH . J 4 HOH B 10 310 27 HOH HOH . J 4 HOH B 11 311 29 HOH HOH . J 4 HOH B 12 312 31 HOH HOH . J 4 HOH B 13 313 33 HOH HOH . J 4 HOH B 14 314 34 HOH HOH . J 4 HOH B 15 315 36 HOH HOH . J 4 HOH B 16 316 39 HOH HOH . J 4 HOH B 17 317 41 HOH HOH . J 4 HOH B 18 318 44 HOH HOH . J 4 HOH B 19 319 46 HOH HOH . J 4 HOH B 20 320 47 HOH HOH . J 4 HOH B 21 321 50 HOH HOH . J 4 HOH B 22 322 51 HOH HOH . J 4 HOH B 23 323 53 HOH HOH . J 4 HOH B 24 324 58 HOH HOH . J 4 HOH B 25 325 59 HOH HOH . J 4 HOH B 26 326 62 HOH HOH . J 4 HOH B 27 327 65 HOH HOH . J 4 HOH B 28 328 70 HOH HOH . J 4 HOH B 29 329 72 HOH HOH . J 4 HOH B 30 330 74 HOH HOH . J 4 HOH B 31 331 77 HOH HOH . J 4 HOH B 32 332 79 HOH HOH . J 4 HOH B 33 333 84 HOH HOH . J 4 HOH B 34 334 85 HOH HOH . J 4 HOH B 35 335 89 HOH HOH . J 4 HOH B 36 336 95 HOH HOH . J 4 HOH B 37 337 96 HOH HOH . J 4 HOH B 38 338 97 HOH HOH . J 4 HOH B 39 339 98 HOH HOH . J 4 HOH B 40 340 100 HOH HOH . J 4 HOH B 41 341 112 HOH HOH . J 4 HOH B 42 342 117 HOH HOH . J 4 HOH B 43 343 118 HOH HOH . J 4 HOH B 44 344 119 HOH HOH . J 4 HOH B 45 345 120 HOH HOH . J 4 HOH B 46 346 121 HOH HOH . J 4 HOH B 47 347 122 HOH HOH . J 4 HOH B 48 348 127 HOH HOH . J 4 HOH B 49 349 128 HOH HOH . J 4 HOH B 50 350 129 HOH HOH . J 4 HOH B 51 351 130 HOH HOH . J 4 HOH B 52 352 131 HOH HOH . J 4 HOH B 53 353 132 HOH HOH . J 4 HOH B 54 354 135 HOH HOH . J 4 HOH B 55 355 137 HOH HOH . J 4 HOH B 56 356 138 HOH HOH . J 4 HOH B 57 357 140 HOH HOH . J 4 HOH B 58 358 141 HOH HOH . J 4 HOH B 59 359 142 HOH HOH . J 4 HOH B 60 360 154 HOH HOH . J 4 HOH B 61 361 155 HOH HOH . J 4 HOH B 62 362 156 HOH HOH . J 4 HOH B 63 363 157 HOH HOH . J 4 HOH B 64 364 158 HOH HOH . J 4 HOH B 65 365 159 HOH HOH . J 4 HOH B 66 366 160 HOH HOH . J 4 HOH B 67 367 161 HOH HOH . J 4 HOH B 68 368 164 HOH HOH . J 4 HOH B 69 369 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -13.583 10.757 29.884 1 72.23 ? C1 GOL 300 B 1 HETATM 2 O O1 GOL . . . H 3 -12.865 9.615 29.466 1 74.47 ? O1 GOL 300 B 1 HETATM 3 C C2 GOL . . . H 3 -15.085 10.524 29.703 1 70.2 ? C2 GOL 300 B 1 HETATM 4 O O2 GOL . . . H 3 -15.417 10.599 28.335 1 60.48 ? O2 GOL 300 B 1 HETATM 5 C C3 GOL . . . H 3 -15.539 9.177 30.271 1 70.05 ? C3 GOL 300 B 1 HETATM 6 O O3 GOL . . . H 3 -16.938 9.203 30.476 1 66.19 ? O3 GOL 300 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #