data_3LVT # _model_server_result.job_id K61RnfUU04HfTPZQQFsWGg _model_server_result.datetime_utc '2025-03-04 15:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":897}' # _entry.id 3LVT # _exptl.entry_id 3LVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LVT _cell.length_a 132.728 _cell.length_b 134.947 _cell.length_c 106.329 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 132.728 0 53.1645 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 357 A CYS 354 1_555 A SG CYS 359 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C HIS 29 A HIS 26 1_555 A N MSE 30 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 30 A MSE 27 1_555 A N ARG 31 A ARG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C ASN 106 A ASN 103 1_555 A N MSE 107 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 107 A MSE 104 1_555 A N LEU 108 A LEU 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 A C MSE 133 A MSE 130 1_555 A N GLY 134 A GLY 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale8 A C GLN 138 A GLN 135 1_555 A N MSE 139 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C MSE 139 A MSE 136 1_555 A N MSE 140 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 140 A MSE 137 1_555 A N GLN 141 A GLN 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C GLU 174 A GLU 171 1_555 A N MSE 175 A MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 175 A MSE 172 1_555 A N TRP 176 A TRP 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 A C LEU 228 A LEU 225 1_555 A N MSE 229 A MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale14 A C MSE 229 A MSE 226 1_555 A N MSE 230 A MSE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 A C MSE 230 A MSE 227 1_555 A N ASN 231 A ASN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C ALA 326 A ALA 323 1_555 A N MSE 327 A MSE 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 A C MSE 327 A MSE 324 1_555 A N ALA 328 A ALA 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale18 A C GLY 367 A GLY 364 1_555 A N MSE 368 A MSE 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale19 A C MSE 368 A MSE 365 1_555 A N MSE 369 A MSE 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 A C MSE 369 A MSE 366 1_555 A N THR 370 A THR 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale21 A C TYR 485 A TYR 482 1_555 A N MSE 486 A MSE 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale22 A C MSE 486 A MSE 483 1_555 A N ALA 487 A ALA 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 A C GLU 498 A GLU 495 1_555 A N MSE 499 A MSE 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 A C MSE 499 A MSE 496 1_555 A N ALA 500 A ALA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale25 A C GLU 529 A GLU 526 1_555 A N MSE 530 A MSE 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 A C MSE 530 A MSE 527 1_555 A N GLU 531 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale27 A C VAL 610 A VAL 607 1_555 A N MSE 611 A MSE 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale28 A C MSE 611 A MSE 608 1_555 A N LEU 612 A LEU 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale29 A C THR 648 A THR 645 1_555 A N MSE 649 A MSE 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale30 A C MSE 649 A MSE 646 1_555 A N VAL 650 A VAL 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale31 A C THR 651 A THR 648 1_555 A N MSE 652 A MSE 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 A C MSE 652 A MSE 649 1_555 A N ILE 653 A ILE 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 A C GLY 681 A GLY 678 1_555 A N MSE 682 A MSE 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale34 A C MSE 682 A MSE 679 1_555 A N VAL 683 A VAL 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A O ASN 250 A ASN 247 1_555 B CA CA . A CA 897 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc2 A O PHE 253 A PHE 250 1_555 B CA CA . A CA 897 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A O TYR 256 A TYR 253 1_555 B CA CA . A CA 897 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LVT _atom_sites.fract_transf_matrix[1][1] 0.007534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 897 1 CA CA . C 3 HOH A 1 898 1 HOH HOH . C 3 HOH A 2 899 2 HOH HOH . C 3 HOH A 3 900 3 HOH HOH . C 3 HOH A 4 901 4 HOH HOH . C 3 HOH A 5 902 5 HOH HOH . C 3 HOH A 6 903 6 HOH HOH . C 3 HOH A 7 904 7 HOH HOH . C 3 HOH A 8 905 8 HOH HOH . C 3 HOH A 9 906 9 HOH HOH . C 3 HOH A 10 907 10 HOH HOH . C 3 HOH A 11 908 11 HOH HOH . C 3 HOH A 12 909 12 HOH HOH . C 3 HOH A 13 910 13 HOH HOH . C 3 HOH A 14 911 14 HOH HOH . C 3 HOH A 15 912 15 HOH HOH . C 3 HOH A 16 913 16 HOH HOH . C 3 HOH A 17 914 17 HOH HOH . C 3 HOH A 18 915 18 HOH HOH . C 3 HOH A 19 916 19 HOH HOH . C 3 HOH A 20 917 20 HOH HOH . C 3 HOH A 21 918 21 HOH HOH . C 3 HOH A 22 919 22 HOH HOH . C 3 HOH A 23 920 23 HOH HOH . C 3 HOH A 24 921 24 HOH HOH . C 3 HOH A 25 922 25 HOH HOH . C 3 HOH A 26 923 26 HOH HOH . C 3 HOH A 27 924 27 HOH HOH . C 3 HOH A 28 925 28 HOH HOH . C 3 HOH A 29 926 29 HOH HOH . C 3 HOH A 30 927 30 HOH HOH . C 3 HOH A 31 928 31 HOH HOH . C 3 HOH A 32 929 32 HOH HOH . C 3 HOH A 33 930 33 HOH HOH . C 3 HOH A 34 931 34 HOH HOH . C 3 HOH A 35 932 35 HOH HOH . C 3 HOH A 36 933 36 HOH HOH . C 3 HOH A 37 934 37 HOH HOH . C 3 HOH A 38 935 38 HOH HOH . C 3 HOH A 39 936 39 HOH HOH . C 3 HOH A 40 937 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.712 _atom_site.Cartn_y 71.058 _atom_site.Cartn_z 17.426 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 897 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #