data_3LVW # _model_server_result.job_id C31nuIoZVtLQwTPxQNoEWw _model_server_result.datetime_utc '2025-01-25 10:48:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":693}' # _entry.id 3LVW # _exptl.entry_id 3LVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LVW _cell.length_a 118.127 _cell.length_b 118.127 _cell.length_c 165.799 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 3LVW _atom_sites.fract_transf_matrix[1][1] 0.008465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 693 1 GSH GSH . C 3 PGE A 1 694 2 PGE PGE . D 3 PGE A 1 695 3 PGE PGE . E 3 PGE A 1 696 4 PGE PGE . F 4 HOH A 1 697 1 HOH HOH . F 4 HOH A 2 698 2 HOH HOH . F 4 HOH A 3 699 3 HOH HOH . F 4 HOH A 4 700 4 HOH HOH . F 4 HOH A 5 701 5 HOH HOH . F 4 HOH A 6 702 6 HOH HOH . F 4 HOH A 7 703 7 HOH HOH . F 4 HOH A 8 704 8 HOH HOH . F 4 HOH A 9 705 9 HOH HOH . F 4 HOH A 10 706 10 HOH HOH . F 4 HOH A 11 707 11 HOH HOH . F 4 HOH A 12 708 12 HOH HOH . F 4 HOH A 13 709 13 HOH HOH . F 4 HOH A 14 710 14 HOH HOH . F 4 HOH A 15 711 15 HOH HOH . F 4 HOH A 16 712 16 HOH HOH . F 4 HOH A 17 713 17 HOH HOH . F 4 HOH A 18 714 18 HOH HOH . F 4 HOH A 19 715 19 HOH HOH . F 4 HOH A 20 716 20 HOH HOH . F 4 HOH A 21 717 21 HOH HOH . F 4 HOH A 22 718 22 HOH HOH . F 4 HOH A 23 719 23 HOH HOH . F 4 HOH A 24 720 24 HOH HOH . F 4 HOH A 25 721 25 HOH HOH . F 4 HOH A 26 722 26 HOH HOH . F 4 HOH A 27 723 27 HOH HOH . F 4 HOH A 28 724 28 HOH HOH . F 4 HOH A 29 725 29 HOH HOH . F 4 HOH A 30 726 30 HOH HOH . F 4 HOH A 31 727 31 HOH HOH . F 4 HOH A 32 728 32 HOH HOH . F 4 HOH A 33 729 33 HOH HOH . F 4 HOH A 34 730 34 HOH HOH . F 4 HOH A 35 731 35 HOH HOH . F 4 HOH A 36 732 36 HOH HOH . F 4 HOH A 37 733 37 HOH HOH . F 4 HOH A 38 734 38 HOH HOH . F 4 HOH A 39 735 39 HOH HOH . F 4 HOH A 40 736 40 HOH HOH . F 4 HOH A 41 737 41 HOH HOH . F 4 HOH A 42 738 42 HOH HOH . F 4 HOH A 43 739 43 HOH HOH . F 4 HOH A 44 740 44 HOH HOH . F 4 HOH A 45 741 45 HOH HOH . F 4 HOH A 46 742 46 HOH HOH . F 4 HOH A 47 743 47 HOH HOH . F 4 HOH A 48 744 48 HOH HOH . F 4 HOH A 49 745 49 HOH HOH . F 4 HOH A 50 746 50 HOH HOH . F 4 HOH A 51 747 51 HOH HOH . F 4 HOH A 52 748 52 HOH HOH . F 4 HOH A 53 749 53 HOH HOH . F 4 HOH A 54 750 54 HOH HOH . F 4 HOH A 55 751 55 HOH HOH . F 4 HOH A 56 752 56 HOH HOH . F 4 HOH A 57 753 57 HOH HOH . F 4 HOH A 58 754 58 HOH HOH . F 4 HOH A 59 755 59 HOH HOH . F 4 HOH A 60 756 60 HOH HOH . F 4 HOH A 61 757 61 HOH HOH . F 4 HOH A 62 758 62 HOH HOH . F 4 HOH A 63 759 63 HOH HOH . F 4 HOH A 64 760 64 HOH HOH . F 4 HOH A 65 761 65 HOH HOH . F 4 HOH A 66 762 66 HOH HOH . F 4 HOH A 67 763 67 HOH HOH . F 4 HOH A 68 764 68 HOH HOH . F 4 HOH A 69 765 69 HOH HOH . F 4 HOH A 70 766 70 HOH HOH . F 4 HOH A 71 767 71 HOH HOH . F 4 HOH A 72 768 72 HOH HOH . F 4 HOH A 73 769 73 HOH HOH . F 4 HOH A 74 770 74 HOH HOH . F 4 HOH A 75 771 75 HOH HOH . F 4 HOH A 76 772 76 HOH HOH . F 4 HOH A 77 773 77 HOH HOH . F 4 HOH A 78 774 78 HOH HOH . F 4 HOH A 79 775 79 HOH HOH . F 4 HOH A 80 776 80 HOH HOH . F 4 HOH A 81 777 81 HOH HOH . F 4 HOH A 82 778 82 HOH HOH . F 4 HOH A 83 779 83 HOH HOH . F 4 HOH A 84 780 84 HOH HOH . F 4 HOH A 85 781 85 HOH HOH . F 4 HOH A 86 782 86 HOH HOH . F 4 HOH A 87 783 87 HOH HOH . F 4 HOH A 88 784 88 HOH HOH . F 4 HOH A 89 785 89 HOH HOH . F 4 HOH A 90 786 90 HOH HOH . F 4 HOH A 91 787 91 HOH HOH . F 4 HOH A 92 788 92 HOH HOH . F 4 HOH A 93 789 93 HOH HOH . F 4 HOH A 94 790 94 HOH HOH . F 4 HOH A 95 791 95 HOH HOH . F 4 HOH A 96 792 96 HOH HOH . F 4 HOH A 97 793 97 HOH HOH . F 4 HOH A 98 794 98 HOH HOH . F 4 HOH A 99 795 99 HOH HOH . F 4 HOH A 100 796 100 HOH HOH . F 4 HOH A 101 797 102 HOH HOH . F 4 HOH A 102 798 103 HOH HOH . F 4 HOH A 103 799 104 HOH HOH . F 4 HOH A 104 800 105 HOH HOH . F 4 HOH A 105 801 106 HOH HOH . F 4 HOH A 106 802 107 HOH HOH . F 4 HOH A 107 803 108 HOH HOH . F 4 HOH A 108 804 109 HOH HOH . F 4 HOH A 109 805 110 HOH HOH . F 4 HOH A 110 806 111 HOH HOH . F 4 HOH A 111 807 112 HOH HOH . F 4 HOH A 112 808 113 HOH HOH . F 4 HOH A 113 809 114 HOH HOH . F 4 HOH A 114 810 115 HOH HOH . F 4 HOH A 115 811 116 HOH HOH . F 4 HOH A 116 812 117 HOH HOH . F 4 HOH A 117 813 118 HOH HOH . F 4 HOH A 118 814 119 HOH HOH . F 4 HOH A 119 815 120 HOH HOH . F 4 HOH A 120 816 121 HOH HOH . F 4 HOH A 121 817 122 HOH HOH . F 4 HOH A 122 818 123 HOH HOH . F 4 HOH A 123 819 124 HOH HOH . F 4 HOH A 124 820 125 HOH HOH . F 4 HOH A 125 821 126 HOH HOH . F 4 HOH A 126 822 127 HOH HOH . F 4 HOH A 127 823 128 HOH HOH . F 4 HOH A 128 824 129 HOH HOH . F 4 HOH A 129 825 130 HOH HOH . F 4 HOH A 130 826 131 HOH HOH . F 4 HOH A 131 827 132 HOH HOH . F 4 HOH A 132 828 133 HOH HOH . F 4 HOH A 133 829 134 HOH HOH . F 4 HOH A 134 830 135 HOH HOH . F 4 HOH A 135 831 136 HOH HOH . F 4 HOH A 136 832 137 HOH HOH . F 4 HOH A 137 833 138 HOH HOH . F 4 HOH A 138 834 139 HOH HOH . F 4 HOH A 139 835 140 HOH HOH . F 4 HOH A 140 836 141 HOH HOH . F 4 HOH A 141 837 142 HOH HOH . F 4 HOH A 142 838 143 HOH HOH . F 4 HOH A 143 839 144 HOH HOH . F 4 HOH A 144 840 145 HOH HOH . F 4 HOH A 145 841 146 HOH HOH . F 4 HOH A 146 842 147 HOH HOH . F 4 HOH A 147 843 148 HOH HOH . F 4 HOH A 148 844 149 HOH HOH . F 4 HOH A 149 845 150 HOH HOH . F 4 HOH A 150 846 151 HOH HOH . F 4 HOH A 151 847 152 HOH HOH . F 4 HOH A 152 848 153 HOH HOH . F 4 HOH A 153 849 154 HOH HOH . F 4 HOH A 154 850 155 HOH HOH . F 4 HOH A 155 851 156 HOH HOH . F 4 HOH A 156 852 157 HOH HOH . F 4 HOH A 157 853 158 HOH HOH . F 4 HOH A 158 854 159 HOH HOH . F 4 HOH A 159 855 160 HOH HOH . F 4 HOH A 160 856 161 HOH HOH . F 4 HOH A 161 857 162 HOH HOH . F 4 HOH A 162 858 163 HOH HOH . F 4 HOH A 163 859 164 HOH HOH . F 4 HOH A 164 860 165 HOH HOH . F 4 HOH A 165 861 166 HOH HOH . F 4 HOH A 166 862 167 HOH HOH . F 4 HOH A 167 863 168 HOH HOH . F 4 HOH A 168 864 169 HOH HOH . F 4 HOH A 169 865 170 HOH HOH . F 4 HOH A 170 866 171 HOH HOH . F 4 HOH A 171 867 172 HOH HOH . F 4 HOH A 172 868 173 HOH HOH . F 4 HOH A 173 869 174 HOH HOH . F 4 HOH A 174 870 175 HOH HOH . F 4 HOH A 175 871 176 HOH HOH . F 4 HOH A 176 872 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . B 2 1.571 35.595 -18.626 1 45.04 ? N1 GSH 693 A 1 HETATM 2 C CA1 GSH . . . B 2 0.94 34.998 -19.815 1 46.06 ? CA1 GSH 693 A 1 HETATM 3 C C1 GSH . . . B 2 1.061 35.867 -21.07 1 48.55 ? C1 GSH 693 A 1 HETATM 4 O O11 GSH . . . B 2 0.615 35.325 -22.139 1 46.03 ? O11 GSH 693 A 1 HETATM 5 O O12 GSH . . . B 2 1.596 37.051 -21.033 1 43.98 ? O12 GSH 693 A 1 HETATM 6 C CB1 GSH . . . B 2 -0.558 34.745 -19.618 1 48.41 ? CB1 GSH 693 A 1 HETATM 7 C CG1 GSH . . . B 2 -0.957 33.943 -18.381 1 51.83 ? CG1 GSH 693 A 1 HETATM 8 C CD1 GSH . . . B 2 -0.65 32.468 -18.606 1 53.76 ? CD1 GSH 693 A 1 HETATM 9 O OE1 GSH . . . B 2 -0.665 31.956 -19.723 1 51.17 ? OE1 GSH 693 A 1 HETATM 10 N N2 GSH . . . B 2 -0.379 31.808 -17.491 1 56.24 ? N2 GSH 693 A 1 HETATM 11 C CA2 GSH . . . B 2 -0.093 30.397 -17.467 1 60.21 ? CA2 GSH 693 A 1 HETATM 12 C C2 GSH . . . B 2 -1.361 29.639 -17.215 1 63.8 ? C2 GSH 693 A 1 HETATM 13 O O2 GSH . . . B 2 -1.552 28.645 -17.873 1 64.44 ? O2 GSH 693 A 1 HETATM 14 C CB2 GSH . . . B 2 0.966 30.178 -16.373 1 59.8 ? CB2 GSH 693 A 1 HETATM 15 S SG2 GSH . . . B 2 1.653 28.495 -16.293 1 54.35 ? SG2 GSH 693 A 1 HETATM 16 N N3 GSH . . . B 2 -2.238 30.093 -16.32 1 70.25 ? N3 GSH 693 A 1 HETATM 17 C CA3 GSH . . . B 2 -3.497 29.465 -15.926 1 76.99 ? CA3 GSH 693 A 1 HETATM 18 C C3 GSH . . . B 2 -3.12 28.382 -14.902 1 82.96 ? C3 GSH 693 A 1 HETATM 19 O O31 GSH . . . B 2 -1.953 28.386 -14.402 1 84.41 ? O31 GSH 693 A 1 HETATM 20 O O32 GSH . . . B 2 -3.961 27.498 -14.562 1 85.84 ? O32 GSH 693 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #