data_3LWD
#
_model_server_result.job_id            MuIAvdFDkSTqj5m3Ku9jeA 
_model_server_result.datetime_utc      '2024-12-21 13:41:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lwd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":228}' 
#
_entry.id    3LWD 
#
_exptl.entry_id    3LWD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3LWD 
_cell.length_a            60.647 
_cell.length_b            60.647 
_cell.length_c            133.089 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LWD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 133.089 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 132 A GLY 131 1_555 A N MSE 133 A MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C MSE 133 A MSE 132 1_555 A N GLY 134 A GLY 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
metalc ? metalc1 A O ALA 164 A ALA 163 1_555 D NA NA . A NA 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc2 A O VAL 167 A VAL 166 1_555 D NA NA . A NA 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc3 D NA NA . A NA 228 1_555 E O HOH . A HOH 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc4 D NA NA . A NA 228 1_555 E O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc5 D NA NA . A NA 228 1_555 E O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc6 D NA NA . A NA 228 1_555 E O HOH . A HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3LWD 
_atom_sites.fract_transf_matrix[1][1]    0.016489 
_atom_sites.fract_transf_matrix[1][2]    0.00952 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01904 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007514 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 226 1 GOL GOL . 
C 2 GOL A 1 227 2 GOL GOL . 
D 3 NA A 1 228 3 NA NA . 
E 4 HOH A 1 229 229 HOH HOH . 
E 4 HOH A 2 230 230 HOH HOH . 
E 4 HOH A 3 231 231 HOH HOH . 
E 4 HOH A 4 232 232 HOH HOH . 
E 4 HOH A 5 233 233 HOH HOH . 
E 4 HOH A 6 234 234 HOH HOH . 
E 4 HOH A 7 235 235 HOH HOH . 
E 4 HOH A 8 236 236 HOH HOH . 
E 4 HOH A 9 237 237 HOH HOH . 
E 4 HOH A 10 238 238 HOH HOH . 
E 4 HOH A 11 239 239 HOH HOH . 
E 4 HOH A 12 240 240 HOH HOH . 
E 4 HOH A 13 241 241 HOH HOH . 
E 4 HOH A 14 242 242 HOH HOH . 
E 4 HOH A 15 243 243 HOH HOH . 
E 4 HOH A 16 244 244 HOH HOH . 
E 4 HOH A 17 245 245 HOH HOH . 
E 4 HOH A 18 246 246 HOH HOH . 
E 4 HOH A 19 247 247 HOH HOH . 
E 4 HOH A 20 248 248 HOH HOH . 
E 4 HOH A 21 249 249 HOH HOH . 
E 4 HOH A 22 250 250 HOH HOH . 
E 4 HOH A 23 251 251 HOH HOH . 
E 4 HOH A 24 252 4 HOH HOH . 
E 4 HOH A 25 253 5 HOH HOH . 
E 4 HOH A 26 254 6 HOH HOH . 
E 4 HOH A 27 255 7 HOH HOH . 
E 4 HOH A 28 256 8 HOH HOH . 
E 4 HOH A 29 257 9 HOH HOH . 
E 4 HOH A 30 258 10 HOH HOH . 
E 4 HOH A 31 259 11 HOH HOH . 
E 4 HOH A 32 260 12 HOH HOH . 
E 4 HOH A 33 261 13 HOH HOH . 
E 4 HOH A 34 262 14 HOH HOH . 
E 4 HOH A 35 263 15 HOH HOH . 
E 4 HOH A 36 264 16 HOH HOH . 
E 4 HOH A 37 265 17 HOH HOH . 
E 4 HOH A 38 266 18 HOH HOH . 
E 4 HOH A 39 267 19 HOH HOH . 
E 4 HOH A 40 268 20 HOH HOH . 
E 4 HOH A 41 269 21 HOH HOH . 
E 4 HOH A 42 270 22 HOH HOH . 
E 4 HOH A 43 271 23 HOH HOH . 
E 4 HOH A 44 272 24 HOH HOH . 
E 4 HOH A 45 273 25 HOH HOH . 
E 4 HOH A 46 274 26 HOH HOH . 
E 4 HOH A 47 275 27 HOH HOH . 
E 4 HOH A 48 276 28 HOH HOH . 
E 4 HOH A 49 277 29 HOH HOH . 
E 4 HOH A 50 278 30 HOH HOH . 
E 4 HOH A 51 279 31 HOH HOH . 
E 4 HOH A 52 280 32 HOH HOH . 
E 4 HOH A 53 281 33 HOH HOH . 
E 4 HOH A 54 282 34 HOH HOH . 
E 4 HOH A 55 283 35 HOH HOH . 
E 4 HOH A 56 284 36 HOH HOH . 
E 4 HOH A 57 285 37 HOH HOH . 
E 4 HOH A 58 286 38 HOH HOH . 
E 4 HOH A 59 287 39 HOH HOH . 
E 4 HOH A 60 288 40 HOH HOH . 
E 4 HOH A 61 289 41 HOH HOH . 
E 4 HOH A 62 290 42 HOH HOH . 
E 4 HOH A 63 291 43 HOH HOH . 
E 4 HOH A 64 292 44 HOH HOH . 
E 4 HOH A 65 293 45 HOH HOH . 
E 4 HOH A 66 294 46 HOH HOH . 
E 4 HOH A 67 295 47 HOH HOH . 
E 4 HOH A 68 296 48 HOH HOH . 
E 4 HOH A 69 297 49 HOH HOH . 
E 4 HOH A 70 298 50 HOH HOH . 
E 4 HOH A 71 299 51 HOH HOH . 
E 4 HOH A 72 300 52 HOH HOH . 
E 4 HOH A 73 301 53 HOH HOH . 
E 4 HOH A 74 302 54 HOH HOH . 
E 4 HOH A 75 303 55 HOH HOH . 
E 4 HOH A 76 304 56 HOH HOH . 
E 4 HOH A 77 305 57 HOH HOH . 
E 4 HOH A 78 306 58 HOH HOH . 
E 4 HOH A 79 307 59 HOH HOH . 
E 4 HOH A 80 308 60 HOH HOH . 
E 4 HOH A 81 309 61 HOH HOH . 
E 4 HOH A 82 310 62 HOH HOH . 
E 4 HOH A 83 311 63 HOH HOH . 
E 4 HOH A 84 312 64 HOH HOH . 
E 4 HOH A 85 313 65 HOH HOH . 
E 4 HOH A 86 314 66 HOH HOH . 
E 4 HOH A 87 315 67 HOH HOH . 
E 4 HOH A 88 316 68 HOH HOH . 
E 4 HOH A 89 317 69 HOH HOH . 
E 4 HOH A 90 318 70 HOH HOH . 
E 4 HOH A 91 319 71 HOH HOH . 
E 4 HOH A 92 320 72 HOH HOH . 
E 4 HOH A 93 321 73 HOH HOH . 
E 4 HOH A 94 322 74 HOH HOH . 
E 4 HOH A 95 323 75 HOH HOH . 
E 4 HOH A 96 324 76 HOH HOH . 
E 4 HOH A 97 325 77 HOH HOH . 
E 4 HOH A 98 326 78 HOH HOH . 
E 4 HOH A 99 327 79 HOH HOH . 
E 4 HOH A 100 328 80 HOH HOH . 
E 4 HOH A 101 329 81 HOH HOH . 
E 4 HOH A 102 330 82 HOH HOH . 
E 4 HOH A 103 331 83 HOH HOH . 
E 4 HOH A 104 332 84 HOH HOH . 
E 4 HOH A 105 333 85 HOH HOH . 
E 4 HOH A 106 334 86 HOH HOH . 
E 4 HOH A 107 335 87 HOH HOH . 
E 4 HOH A 108 336 88 HOH HOH . 
E 4 HOH A 109 337 89 HOH HOH . 
E 4 HOH A 110 338 90 HOH HOH . 
E 4 HOH A 111 339 91 HOH HOH . 
E 4 HOH A 112 340 92 HOH HOH . 
E 4 HOH A 113 341 93 HOH HOH . 
E 4 HOH A 114 342 94 HOH HOH . 
E 4 HOH A 115 343 95 HOH HOH . 
E 4 HOH A 116 344 96 HOH HOH . 
E 4 HOH A 117 345 97 HOH HOH . 
E 4 HOH A 118 346 98 HOH HOH . 
E 4 HOH A 119 347 99 HOH HOH . 
E 4 HOH A 120 348 100 HOH HOH . 
E 4 HOH A 121 349 101 HOH HOH . 
E 4 HOH A 122 350 102 HOH HOH . 
E 4 HOH A 123 351 103 HOH HOH . 
E 4 HOH A 124 352 104 HOH HOH . 
E 4 HOH A 125 353 105 HOH HOH . 
E 4 HOH A 126 354 106 HOH HOH . 
E 4 HOH A 127 355 107 HOH HOH . 
E 4 HOH A 128 356 108 HOH HOH . 
E 4 HOH A 129 357 109 HOH HOH . 
E 4 HOH A 130 358 110 HOH HOH . 
E 4 HOH A 131 359 111 HOH HOH . 
E 4 HOH A 132 360 112 HOH HOH . 
E 4 HOH A 133 361 113 HOH HOH . 
E 4 HOH A 134 362 114 HOH HOH . 
E 4 HOH A 135 363 115 HOH HOH . 
E 4 HOH A 136 364 116 HOH HOH . 
E 4 HOH A 137 365 117 HOH HOH . 
E 4 HOH A 138 366 118 HOH HOH . 
E 4 HOH A 139 367 119 HOH HOH . 
E 4 HOH A 140 368 120 HOH HOH . 
E 4 HOH A 141 369 121 HOH HOH . 
E 4 HOH A 142 370 122 HOH HOH . 
E 4 HOH A 143 371 123 HOH HOH . 
E 4 HOH A 144 372 124 HOH HOH . 
E 4 HOH A 145 373 125 HOH HOH . 
E 4 HOH A 146 374 126 HOH HOH . 
E 4 HOH A 147 375 127 HOH HOH . 
E 4 HOH A 148 376 128 HOH HOH . 
E 4 HOH A 149 377 129 HOH HOH . 
E 4 HOH A 150 378 130 HOH HOH . 
E 4 HOH A 151 379 131 HOH HOH . 
E 4 HOH A 152 380 132 HOH HOH . 
E 4 HOH A 153 381 133 HOH HOH . 
E 4 HOH A 154 382 134 HOH HOH . 
E 4 HOH A 155 383 135 HOH HOH . 
E 4 HOH A 156 384 136 HOH HOH . 
E 4 HOH A 157 385 137 HOH HOH . 
E 4 HOH A 158 386 138 HOH HOH . 
E 4 HOH A 159 387 139 HOH HOH . 
E 4 HOH A 160 388 140 HOH HOH . 
E 4 HOH A 161 389 141 HOH HOH . 
E 4 HOH A 162 390 142 HOH HOH . 
E 4 HOH A 163 391 143 HOH HOH . 
E 4 HOH A 164 392 144 HOH HOH . 
E 4 HOH A 165 393 145 HOH HOH . 
E 4 HOH A 166 394 146 HOH HOH . 
E 4 HOH A 167 395 147 HOH HOH . 
E 4 HOH A 168 396 148 HOH HOH . 
E 4 HOH A 169 397 149 HOH HOH . 
E 4 HOH A 170 398 150 HOH HOH . 
E 4 HOH A 171 399 151 HOH HOH . 
E 4 HOH A 172 400 152 HOH HOH . 
E 4 HOH A 173 401 153 HOH HOH . 
E 4 HOH A 174 402 154 HOH HOH . 
E 4 HOH A 175 403 155 HOH HOH . 
E 4 HOH A 176 404 156 HOH HOH . 
E 4 HOH A 177 405 157 HOH HOH . 
E 4 HOH A 178 406 158 HOH HOH . 
E 4 HOH A 179 407 159 HOH HOH . 
E 4 HOH A 180 408 160 HOH HOH . 
E 4 HOH A 181 409 161 HOH HOH . 
E 4 HOH A 182 410 162 HOH HOH . 
E 4 HOH A 183 411 163 HOH HOH . 
E 4 HOH A 184 412 164 HOH HOH . 
E 4 HOH A 185 413 165 HOH HOH . 
E 4 HOH A 186 414 166 HOH HOH . 
E 4 HOH A 187 415 167 HOH HOH . 
E 4 HOH A 188 416 168 HOH HOH . 
E 4 HOH A 189 417 169 HOH HOH . 
E 4 HOH A 190 418 170 HOH HOH . 
E 4 HOH A 191 419 171 HOH HOH . 
E 4 HOH A 192 420 172 HOH HOH . 
E 4 HOH A 193 421 173 HOH HOH . 
E 4 HOH A 194 422 174 HOH HOH . 
E 4 HOH A 195 423 175 HOH HOH . 
E 4 HOH A 196 424 176 HOH HOH . 
E 4 HOH A 197 425 177 HOH HOH . 
E 4 HOH A 198 426 178 HOH HOH . 
E 4 HOH A 199 427 179 HOH HOH . 
E 4 HOH A 200 428 180 HOH HOH . 
E 4 HOH A 201 429 181 HOH HOH . 
E 4 HOH A 202 430 182 HOH HOH . 
E 4 HOH A 203 431 183 HOH HOH . 
E 4 HOH A 204 432 184 HOH HOH . 
E 4 HOH A 205 433 185 HOH HOH . 
E 4 HOH A 206 434 186 HOH HOH . 
E 4 HOH A 207 435 187 HOH HOH . 
E 4 HOH A 208 436 188 HOH HOH . 
E 4 HOH A 209 437 189 HOH HOH . 
E 4 HOH A 210 438 190 HOH HOH . 
E 4 HOH A 211 439 191 HOH HOH . 
E 4 HOH A 212 440 192 HOH HOH . 
E 4 HOH A 213 441 193 HOH HOH . 
E 4 HOH A 214 442 194 HOH HOH . 
E 4 HOH A 215 443 195 HOH HOH . 
E 4 HOH A 216 444 196 HOH HOH . 
E 4 HOH A 217 445 197 HOH HOH . 
E 4 HOH A 218 446 198 HOH HOH . 
E 4 HOH A 219 447 199 HOH HOH . 
E 4 HOH A 220 448 200 HOH HOH . 
E 4 HOH A 221 449 201 HOH HOH . 
E 4 HOH A 222 450 202 HOH HOH . 
E 4 HOH A 223 451 203 HOH HOH . 
E 4 HOH A 224 452 204 HOH HOH . 
E 4 HOH A 225 453 205 HOH HOH . 
E 4 HOH A 226 454 206 HOH HOH . 
E 4 HOH A 227 455 207 HOH HOH . 
E 4 HOH A 228 456 208 HOH HOH . 
E 4 HOH A 229 457 209 HOH HOH . 
E 4 HOH A 230 458 210 HOH HOH . 
E 4 HOH A 231 459 211 HOH HOH . 
E 4 HOH A 232 460 212 HOH HOH . 
E 4 HOH A 233 461 213 HOH HOH . 
E 4 HOH A 234 462 214 HOH HOH . 
E 4 HOH A 235 463 215 HOH HOH . 
E 4 HOH A 236 464 216 HOH HOH . 
E 4 HOH A 237 465 217 HOH HOH . 
E 4 HOH A 238 466 218 HOH HOH . 
E 4 HOH A 239 467 219 HOH HOH . 
E 4 HOH A 240 468 220 HOH HOH . 
E 4 HOH A 241 469 221 HOH HOH . 
E 4 HOH A 242 470 222 HOH HOH . 
E 4 HOH A 243 471 223 HOH HOH . 
E 4 HOH A 244 472 224 HOH HOH . 
E 4 HOH A 245 473 225 HOH HOH . 
E 4 HOH A 246 474 226 HOH HOH . 
E 4 HOH A 247 475 227 HOH HOH . 
E 4 HOH A 248 476 228 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               16.264 
_atom_site.Cartn_y               35.77 
_atom_site.Cartn_z               37.938 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.63 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           228 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           1 
#