data_3LWK # _model_server_result.job_id FvOFbiEVYGMZAw4Or3CV4A _model_server_result.datetime_utc '2024-12-23 05:47:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3}' # _entry.id 3LWK # _exptl.entry_id 3LWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LWK _cell.length_a 94.79 _cell.length_b 94.79 _cell.length_c 90.21 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 47.395 47.395 45.105 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 94 A CYS 99 1_555 A SG CYS 161 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? covale ? covale1 A C MET 2 A MET 0 1_555 A N SER 3 A SER 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3LWK _atom_sites.fract_transf_matrix[1][1] 0.01055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1 1 PO4 PO4 . C 3 GOL A 1 2 2 GOL GOL . D 3 GOL A 1 3 3 GOL GOL . E 3 GOL A 1 4 4 GOL GOL . F 3 GOL A 1 5 5 GOL GOL . G 3 GOL A 1 6 6 GOL GOL . H 4 HOH A 1 7 7 HOH HOH . H 4 HOH A 2 197 1 HOH HOH . H 4 HOH A 3 198 2 HOH HOH . H 4 HOH A 4 199 3 HOH HOH . H 4 HOH A 5 200 4 HOH HOH . H 4 HOH A 6 201 5 HOH HOH . H 4 HOH A 7 202 6 HOH HOH . H 4 HOH A 8 203 8 HOH HOH . H 4 HOH A 9 204 9 HOH HOH . H 4 HOH A 10 205 10 HOH HOH . H 4 HOH A 11 206 11 HOH HOH . H 4 HOH A 12 207 12 HOH HOH . H 4 HOH A 13 208 13 HOH HOH . H 4 HOH A 14 209 14 HOH HOH . H 4 HOH A 15 210 15 HOH HOH . H 4 HOH A 16 211 16 HOH HOH . H 4 HOH A 17 212 17 HOH HOH . H 4 HOH A 18 213 18 HOH HOH . H 4 HOH A 19 214 19 HOH HOH . H 4 HOH A 20 215 20 HOH HOH . H 4 HOH A 21 216 21 HOH HOH . H 4 HOH A 22 217 22 HOH HOH . H 4 HOH A 23 218 23 HOH HOH . H 4 HOH A 24 219 24 HOH HOH . H 4 HOH A 25 220 25 HOH HOH . H 4 HOH A 26 221 26 HOH HOH . H 4 HOH A 27 222 27 HOH HOH . H 4 HOH A 28 223 28 HOH HOH . H 4 HOH A 29 224 29 HOH HOH . H 4 HOH A 30 225 30 HOH HOH . H 4 HOH A 31 226 31 HOH HOH . H 4 HOH A 32 227 32 HOH HOH . H 4 HOH A 33 228 33 HOH HOH . H 4 HOH A 34 229 34 HOH HOH . H 4 HOH A 35 230 35 HOH HOH . H 4 HOH A 36 231 36 HOH HOH . H 4 HOH A 37 232 37 HOH HOH . H 4 HOH A 38 233 38 HOH HOH . H 4 HOH A 39 234 39 HOH HOH . H 4 HOH A 40 235 40 HOH HOH . H 4 HOH A 41 236 41 HOH HOH . H 4 HOH A 42 237 42 HOH HOH . H 4 HOH A 43 238 43 HOH HOH . H 4 HOH A 44 239 44 HOH HOH . H 4 HOH A 45 240 45 HOH HOH . H 4 HOH A 46 241 46 HOH HOH . H 4 HOH A 47 242 47 HOH HOH . H 4 HOH A 48 243 48 HOH HOH . H 4 HOH A 49 244 49 HOH HOH . H 4 HOH A 50 245 50 HOH HOH . H 4 HOH A 51 246 51 HOH HOH . H 4 HOH A 52 247 52 HOH HOH . H 4 HOH A 53 248 53 HOH HOH . H 4 HOH A 54 249 54 HOH HOH . H 4 HOH A 55 250 55 HOH HOH . H 4 HOH A 56 251 56 HOH HOH . H 4 HOH A 57 252 57 HOH HOH . H 4 HOH A 58 253 58 HOH HOH . H 4 HOH A 59 254 59 HOH HOH . H 4 HOH A 60 255 60 HOH HOH . H 4 HOH A 61 256 61 HOH HOH . H 4 HOH A 62 257 62 HOH HOH . H 4 HOH A 63 258 63 HOH HOH . H 4 HOH A 64 259 64 HOH HOH . H 4 HOH A 65 260 65 HOH HOH . H 4 HOH A 66 261 66 HOH HOH . H 4 HOH A 67 262 67 HOH HOH . H 4 HOH A 68 263 68 HOH HOH . H 4 HOH A 69 264 69 HOH HOH . H 4 HOH A 70 265 70 HOH HOH . H 4 HOH A 71 266 71 HOH HOH . H 4 HOH A 72 267 72 HOH HOH . H 4 HOH A 73 268 73 HOH HOH . H 4 HOH A 74 269 74 HOH HOH . H 4 HOH A 75 270 75 HOH HOH . H 4 HOH A 76 271 76 HOH HOH . H 4 HOH A 77 272 77 HOH HOH . H 4 HOH A 78 273 78 HOH HOH . H 4 HOH A 79 274 79 HOH HOH . H 4 HOH A 80 275 80 HOH HOH . H 4 HOH A 81 276 81 HOH HOH . H 4 HOH A 82 277 82 HOH HOH . H 4 HOH A 83 278 83 HOH HOH . H 4 HOH A 84 279 84 HOH HOH . H 4 HOH A 85 280 85 HOH HOH . H 4 HOH A 86 281 86 HOH HOH . H 4 HOH A 87 282 87 HOH HOH . H 4 HOH A 88 283 88 HOH HOH . H 4 HOH A 89 284 89 HOH HOH . H 4 HOH A 90 285 90 HOH HOH . H 4 HOH A 91 286 91 HOH HOH . H 4 HOH A 92 287 92 HOH HOH . H 4 HOH A 93 288 93 HOH HOH . H 4 HOH A 94 289 94 HOH HOH . H 4 HOH A 95 290 95 HOH HOH . H 4 HOH A 96 291 96 HOH HOH . H 4 HOH A 97 292 97 HOH HOH . H 4 HOH A 98 293 98 HOH HOH . H 4 HOH A 99 294 99 HOH HOH . H 4 HOH A 100 295 100 HOH HOH . H 4 HOH A 101 296 101 HOH HOH . H 4 HOH A 102 297 102 HOH HOH . H 4 HOH A 103 298 103 HOH HOH . H 4 HOH A 104 299 104 HOH HOH . H 4 HOH A 105 300 105 HOH HOH . H 4 HOH A 106 301 106 HOH HOH . H 4 HOH A 107 302 107 HOH HOH . H 4 HOH A 108 303 108 HOH HOH . H 4 HOH A 109 304 109 HOH HOH . H 4 HOH A 110 305 110 HOH HOH . H 4 HOH A 111 306 111 HOH HOH . H 4 HOH A 112 307 112 HOH HOH . H 4 HOH A 113 308 113 HOH HOH . H 4 HOH A 114 309 114 HOH HOH . H 4 HOH A 115 310 115 HOH HOH . H 4 HOH A 116 311 116 HOH HOH . H 4 HOH A 117 312 117 HOH HOH . H 4 HOH A 118 313 118 HOH HOH . H 4 HOH A 119 314 119 HOH HOH . H 4 HOH A 120 315 120 HOH HOH . H 4 HOH A 121 316 121 HOH HOH . H 4 HOH A 122 317 122 HOH HOH . H 4 HOH A 123 318 123 HOH HOH . H 4 HOH A 124 319 124 HOH HOH . H 4 HOH A 125 320 125 HOH HOH . H 4 HOH A 126 321 126 HOH HOH . H 4 HOH A 127 322 127 HOH HOH . H 4 HOH A 128 323 128 HOH HOH . H 4 HOH A 129 324 129 HOH HOH . H 4 HOH A 130 325 130 HOH HOH . H 4 HOH A 131 326 131 HOH HOH . H 4 HOH A 132 327 132 HOH HOH . H 4 HOH A 133 328 133 HOH HOH . H 4 HOH A 134 329 134 HOH HOH . H 4 HOH A 135 330 135 HOH HOH . H 4 HOH A 136 331 136 HOH HOH . H 4 HOH A 137 332 137 HOH HOH . H 4 HOH A 138 333 138 HOH HOH . H 4 HOH A 139 334 139 HOH HOH . H 4 HOH A 140 335 140 HOH HOH . H 4 HOH A 141 336 141 HOH HOH . H 4 HOH A 142 337 142 HOH HOH . H 4 HOH A 143 338 143 HOH HOH . H 4 HOH A 144 339 144 HOH HOH . H 4 HOH A 145 340 145 HOH HOH . H 4 HOH A 146 341 146 HOH HOH . H 4 HOH A 147 342 147 HOH HOH . H 4 HOH A 148 343 148 HOH HOH . H 4 HOH A 149 344 149 HOH HOH . H 4 HOH A 150 345 150 HOH HOH . H 4 HOH A 151 346 151 HOH HOH . H 4 HOH A 152 347 152 HOH HOH . H 4 HOH A 153 348 153 HOH HOH . H 4 HOH A 154 349 154 HOH HOH . H 4 HOH A 155 350 155 HOH HOH . H 4 HOH A 156 351 156 HOH HOH . H 4 HOH A 157 352 157 HOH HOH . H 4 HOH A 158 353 158 HOH HOH . H 4 HOH A 159 354 159 HOH HOH . H 4 HOH A 160 355 160 HOH HOH . H 4 HOH A 161 356 161 HOH HOH . H 4 HOH A 162 357 162 HOH HOH . H 4 HOH A 163 358 163 HOH HOH . H 4 HOH A 164 359 164 HOH HOH . H 4 HOH A 165 360 165 HOH HOH . H 4 HOH A 166 361 166 HOH HOH . H 4 HOH A 167 362 167 HOH HOH . H 4 HOH A 168 363 168 HOH HOH . H 4 HOH A 169 364 169 HOH HOH . H 4 HOH A 170 365 170 HOH HOH . H 4 HOH A 171 366 171 HOH HOH . H 4 HOH A 172 367 172 HOH HOH . H 4 HOH A 173 368 173 HOH HOH . H 4 HOH A 174 369 174 HOH HOH . H 4 HOH A 175 370 175 HOH HOH . H 4 HOH A 176 371 176 HOH HOH . H 4 HOH A 177 372 177 HOH HOH . H 4 HOH A 178 373 178 HOH HOH . H 4 HOH A 179 374 179 HOH HOH . H 4 HOH A 180 375 180 HOH HOH . H 4 HOH A 181 376 181 HOH HOH . H 4 HOH A 182 377 182 HOH HOH . H 4 HOH A 183 378 183 HOH HOH . H 4 HOH A 184 379 184 HOH HOH . H 4 HOH A 185 380 185 HOH HOH . H 4 HOH A 186 381 186 HOH HOH . H 4 HOH A 187 382 187 HOH HOH . H 4 HOH A 188 383 188 HOH HOH . H 4 HOH A 189 384 189 HOH HOH . H 4 HOH A 190 385 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 29.736 -0.863 0.998 1 41.12 ? C1 GOL 3 A 1 HETATM 2 O O1 GOL . . . D 3 28.994 -0.151 0.067 0.5 41.57 ? O1 GOL 3 A 1 HETATM 3 C C2 GOL . . . D 3 28.955 -0.687 2.269 1 31.4 ? C2 GOL 3 A 1 HETATM 4 O O2 GOL . . . D 3 29.806 -0.18 3.259 1 39.76 ? O2 GOL 3 A 1 HETATM 5 C C3 GOL . . . D 3 28.643 -2.066 2.667 1 35.51 ? C3 GOL 3 A 1 HETATM 6 O O3 GOL . . . D 3 27.872 -1.982 3.806 1 34.91 ? O3 GOL 3 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #