data_3LXF # _model_server_result.job_id Ydq3YDgqkBjhHhlV58wMdQ _model_server_result.datetime_utc '2024-11-13 05:46:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":500}' # _entry.id 3LXF # _exptl.entry_id 3LXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.04 _cell.angle_gamma 90 _cell.entry_id 3LXF _cell.length_a 137.554 _cell.length_b 78.788 _cell.length_c 89.2 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 51.214017 0 -73.032626 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 43 1_555 A SG CYS 42 A CYS 43 2_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf2 B SG CYS 42 B CYS 43 1_555 D SG CYS 42 D CYS 43 2_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? disulf ? disulf3 C SG CYS 42 C CYS 43 1_555 E SG CYS 42 E CYS 43 2_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc1 A SG CYS 39 A CYS 40 1_555 F FE2 FES . A FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A SG CYS 45 A CYS 46 1_555 F FE2 FES . A FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A SG CYS 48 A CYS 49 1_555 F FE1 FES . A FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A SG CYS 85 A CYS 86 1_555 F FE1 FES . A FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 B SG CYS 39 B CYS 40 1_555 G FE2 FES . B FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc6 B SG CYS 45 B CYS 46 1_555 G FE2 FES . B FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc7 B SG CYS 48 B CYS 49 1_555 G FE1 FES . B FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 B SG CYS 85 B CYS 86 1_555 G FE1 FES . B FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 C SG CYS 39 C CYS 40 1_555 H FE2 FES . C FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 C SG CYS 45 C CYS 46 1_555 H FE2 FES . C FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc11 C SG CYS 48 C CYS 49 1_555 H FE1 FES . C FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc12 C SG CYS 85 C CYS 86 1_555 H FE1 FES . C FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc13 D SG CYS 39 D CYS 40 1_555 I FE2 FES . D FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc14 D SG CYS 45 D CYS 46 1_555 I FE2 FES . D FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc15 D SG CYS 48 D CYS 49 1_555 I FE1 FES . D FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc16 D SG CYS 85 D CYS 86 1_555 I FE1 FES . D FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc17 E SG CYS 39 E CYS 40 1_555 J FE2 FES . E FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc18 E SG CYS 45 E CYS 46 1_555 J FE2 FES . E FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc19 E SG CYS 48 E CYS 49 1_555 J FE1 FES . E FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc20 E SG CYS 85 E CYS 86 1_555 J FE1 FES . E FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 3LXF _atom_sites.fract_transf_matrix[1][1] 0.00727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005099 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 FES A 1 500 500 FES FES . G 2 FES B 1 500 500 FES FES . H 2 FES C 1 500 500 FES FES . I 2 FES D 1 500 500 FES FES . J 2 FES E 1 500 500 FES FES . K 3 HOH A 1 106 11 HOH HOH . K 3 HOH A 2 107 107 HOH HOH . K 3 HOH A 3 108 108 HOH HOH . K 3 HOH A 4 109 13 HOH HOH . K 3 HOH A 5 110 17 HOH HOH . K 3 HOH A 6 111 18 HOH HOH . K 3 HOH A 7 112 20 HOH HOH . K 3 HOH A 8 113 113 HOH HOH . K 3 HOH A 9 114 114 HOH HOH . K 3 HOH A 10 115 21 HOH HOH . K 3 HOH A 11 116 23 HOH HOH . K 3 HOH A 12 117 24 HOH HOH . K 3 HOH A 13 118 25 HOH HOH . K 3 HOH A 14 119 26 HOH HOH . K 3 HOH A 15 120 120 HOH HOH . K 3 HOH A 16 121 28 HOH HOH . K 3 HOH A 17 122 29 HOH HOH . K 3 HOH A 18 123 31 HOH HOH . K 3 HOH A 19 124 39 HOH HOH . K 3 HOH A 20 125 45 HOH HOH . K 3 HOH A 21 126 46 HOH HOH . K 3 HOH A 22 127 127 HOH HOH . K 3 HOH A 23 128 48 HOH HOH . K 3 HOH A 24 129 129 HOH HOH . K 3 HOH A 25 130 55 HOH HOH . K 3 HOH A 26 131 58 HOH HOH . K 3 HOH A 27 132 132 HOH HOH . K 3 HOH A 28 133 133 HOH HOH . K 3 HOH A 29 134 60 HOH HOH . K 3 HOH A 30 135 135 HOH HOH . K 3 HOH A 31 136 70 HOH HOH . K 3 HOH A 32 137 72 HOH HOH . K 3 HOH A 33 138 73 HOH HOH . K 3 HOH A 34 139 79 HOH HOH . K 3 HOH A 35 140 80 HOH HOH . K 3 HOH A 36 141 101 HOH HOH . L 3 HOH B 1 106 4 HOH HOH . L 3 HOH B 2 107 6 HOH HOH . L 3 HOH B 3 108 7 HOH HOH . L 3 HOH B 4 109 10 HOH HOH . L 3 HOH B 5 110 14 HOH HOH . L 3 HOH B 6 111 30 HOH HOH . L 3 HOH B 7 112 42 HOH HOH . L 3 HOH B 8 113 43 HOH HOH . L 3 HOH B 9 114 44 HOH HOH . L 3 HOH B 10 115 115 HOH HOH . L 3 HOH B 11 116 116 HOH HOH . L 3 HOH B 12 117 56 HOH HOH . L 3 HOH B 13 118 67 HOH HOH . L 3 HOH B 14 119 119 HOH HOH . L 3 HOH B 15 120 68 HOH HOH . L 3 HOH B 16 121 121 HOH HOH . L 3 HOH B 17 122 74 HOH HOH . L 3 HOH B 18 123 76 HOH HOH . L 3 HOH B 19 124 78 HOH HOH . L 3 HOH B 20 125 87 HOH HOH . L 3 HOH B 21 126 88 HOH HOH . L 3 HOH B 22 127 92 HOH HOH . L 3 HOH B 23 128 93 HOH HOH . L 3 HOH B 24 129 95 HOH HOH . L 3 HOH B 25 130 102 HOH HOH . L 3 HOH B 26 131 103 HOH HOH . L 3 HOH B 27 137 137 HOH HOH . L 3 HOH B 28 138 138 HOH HOH . L 3 HOH B 29 140 140 HOH HOH . M 3 HOH C 1 1 1 HOH HOH . M 3 HOH C 2 106 12 HOH HOH . M 3 HOH C 3 107 27 HOH HOH . M 3 HOH C 4 108 33 HOH HOH . M 3 HOH C 5 109 34 HOH HOH . M 3 HOH C 6 110 110 HOH HOH . M 3 HOH C 7 111 35 HOH HOH . M 3 HOH C 8 112 36 HOH HOH . M 3 HOH C 9 113 38 HOH HOH . M 3 HOH C 10 114 52 HOH HOH . M 3 HOH C 11 115 54 HOH HOH . M 3 HOH C 12 116 63 HOH HOH . M 3 HOH C 13 117 117 HOH HOH . M 3 HOH C 14 118 69 HOH HOH . M 3 HOH C 15 119 77 HOH HOH . M 3 HOH C 16 120 83 HOH HOH . M 3 HOH C 17 121 89 HOH HOH . M 3 HOH C 18 122 122 HOH HOH . M 3 HOH C 19 123 123 HOH HOH . M 3 HOH C 20 124 124 HOH HOH . M 3 HOH C 21 125 125 HOH HOH . M 3 HOH C 22 126 90 HOH HOH . M 3 HOH C 23 127 100 HOH HOH . M 3 HOH C 24 128 104 HOH HOH . M 3 HOH C 25 129 105 HOH HOH . M 3 HOH C 26 130 130 HOH HOH . M 3 HOH C 27 131 131 HOH HOH . N 3 HOH D 1 106 8 HOH HOH . N 3 HOH D 2 107 15 HOH HOH . N 3 HOH D 3 108 16 HOH HOH . N 3 HOH D 4 109 109 HOH HOH . N 3 HOH D 5 110 22 HOH HOH . N 3 HOH D 6 111 32 HOH HOH . N 3 HOH D 7 112 37 HOH HOH . N 3 HOH D 8 113 41 HOH HOH . N 3 HOH D 9 114 50 HOH HOH . N 3 HOH D 10 115 51 HOH HOH . N 3 HOH D 11 116 59 HOH HOH . N 3 HOH D 12 117 62 HOH HOH . N 3 HOH D 13 118 118 HOH HOH . N 3 HOH D 14 119 65 HOH HOH . N 3 HOH D 15 120 75 HOH HOH . N 3 HOH D 16 121 81 HOH HOH . N 3 HOH D 17 122 82 HOH HOH . N 3 HOH D 18 123 84 HOH HOH . N 3 HOH D 19 124 86 HOH HOH . N 3 HOH D 20 125 91 HOH HOH . N 3 HOH D 21 126 126 HOH HOH . N 3 HOH D 22 127 94 HOH HOH . N 3 HOH D 23 128 128 HOH HOH . N 3 HOH D 24 129 98 HOH HOH . N 3 HOH D 25 130 99 HOH HOH . N 3 HOH D 26 134 134 HOH HOH . N 3 HOH D 27 136 136 HOH HOH . N 3 HOH D 28 139 139 HOH HOH . O 3 HOH E 1 106 106 HOH HOH . O 3 HOH E 2 107 19 HOH HOH . O 3 HOH E 3 108 40 HOH HOH . O 3 HOH E 4 109 47 HOH HOH . O 3 HOH E 5 110 53 HOH HOH . O 3 HOH E 6 111 111 HOH HOH . O 3 HOH E 7 112 112 HOH HOH . O 3 HOH E 8 113 57 HOH HOH . O 3 HOH E 9 114 61 HOH HOH . O 3 HOH E 10 115 66 HOH HOH . O 3 HOH E 11 116 71 HOH HOH . O 3 HOH E 12 117 85 HOH HOH . O 3 HOH E 13 118 96 HOH HOH . O 3 HOH E 14 119 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . G 2 34.248 27.1 -20.819 1 32.64 ? FE1 FES 500 B 1 HETATM 2 FE FE2 FES . . . G 2 34.339 24.302 -20.761 1 31.82 ? FE2 FES 500 B 1 HETATM 3 S S1 FES . . . G 2 33.032 25.611 -21.914 1 28.79 ? S1 FES 500 B 1 HETATM 4 S S2 FES . . . G 2 35.556 25.796 -19.7 1 31.33 ? S2 FES 500 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #