data_3LXN # _model_server_result.job_id hevzigGGCfx5cY3rbyOs2g _model_server_result.datetime_utc '2024-10-13 14:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3LXN # _exptl.entry_id 3LXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.37 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{(3R,4R)-4-methyl-3-[methyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-1-yl}-3-oxopropanenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LXN _cell.length_a 36.306 _cell.length_b 74.262 _cell.length_c 106.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 189 A GLU 1053 1_555 A N PTR 190 A PTR 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PTR 190 A PTR 1054 1_555 A N TYR 191 A TYR 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C16 H20 N6 O' _chem_comp.formula_weight 312.37 _chem_comp.id MI1 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{(3R,4R)-4-methyl-3-[methyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-1-yl}-3-oxopropanenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CP-690,550 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 MI1 sing 237 n n C1 C6 MI1 sing 238 n n C1 N8 MI1 sing 239 n n C1 H1 MI1 sing 240 n n N3 C2 MI1 sing 241 n n C2 H2 MI1 sing 242 n n C2 H2A MI1 sing 243 n n N3 C4 MI1 sing 244 n n C4 C5 MI1 sing 245 n n C4 H4 MI1 sing 246 n n C4 H4A MI1 sing 247 n n C5 C6 MI1 sing 248 n n C5 H5 MI1 sing 249 n n C5 H5A MI1 sing 250 n n C7 C6 MI1 sing 251 n n C6 H6 MI1 sing 252 n n C20 N3 MI1 sing 253 n n O21 C20 MI1 doub 254 n n C22 C20 MI1 sing 255 n n C23 C22 MI1 sing 256 n n C22 H22 MI1 sing 257 n n C22 H22A MI1 sing 258 n n N24 C23 MI1 trip 259 n n C7 H7 MI1 sing 260 n n C7 H7A MI1 sing 261 n n C7 H7B MI1 sing 262 n n C9 N8 MI1 sing 263 n n N8 C10 MI1 sing 264 n n C9 H9 MI1 sing 265 n n C9 H9A MI1 sing 266 n n C9 H9B MI1 sing 267 n n C10 N19 MI1 doub 268 n y C10 C15 MI1 sing 269 n y C15 C16 MI1 sing 270 n y C15 C14 MI1 doub 271 n y C16 C11 MI1 doub 272 n y C16 H16 MI1 sing 273 n n C11 N12 MI1 sing 274 n y C11 H11 MI1 sing 275 n n C14 N12 MI1 sing 276 n y C14 N17 MI1 sing 277 n y C18 N17 MI1 doub 278 n y N19 C18 MI1 sing 279 n y C18 H18 MI1 sing 280 n n N12 HN12 MI1 sing 281 n n # _atom_sites.entry_id 3LXN _atom_sites.fract_transf_matrix[1][1] 0.027544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MI1 A 1 1 1 MI1 MI1 . C 3 HOH A 1 4 4 HOH HOH . C 3 HOH A 2 6 6 HOH HOH . C 3 HOH A 3 7 7 HOH HOH . C 3 HOH A 4 8 8 HOH HOH . C 3 HOH A 5 9 9 HOH HOH . C 3 HOH A 6 10 10 HOH HOH . C 3 HOH A 7 11 11 HOH HOH . C 3 HOH A 8 12 12 HOH HOH . C 3 HOH A 9 15 15 HOH HOH . C 3 HOH A 10 16 16 HOH HOH . C 3 HOH A 11 18 18 HOH HOH . C 3 HOH A 12 19 19 HOH HOH . C 3 HOH A 13 20 20 HOH HOH . C 3 HOH A 14 23 23 HOH HOH . C 3 HOH A 15 24 24 HOH HOH . C 3 HOH A 16 26 26 HOH HOH . C 3 HOH A 17 30 30 HOH HOH . C 3 HOH A 18 31 31 HOH HOH . C 3 HOH A 19 32 32 HOH HOH . C 3 HOH A 20 33 33 HOH HOH . C 3 HOH A 21 37 37 HOH HOH . C 3 HOH A 22 38 38 HOH HOH . C 3 HOH A 23 43 43 HOH HOH . C 3 HOH A 24 47 47 HOH HOH . C 3 HOH A 25 48 48 HOH HOH . C 3 HOH A 26 58 58 HOH HOH . C 3 HOH A 27 59 59 HOH HOH . C 3 HOH A 28 60 60 HOH HOH . C 3 HOH A 29 61 61 HOH HOH . C 3 HOH A 30 62 62 HOH HOH . C 3 HOH A 31 64 64 HOH HOH . C 3 HOH A 32 67 67 HOH HOH . C 3 HOH A 33 73 73 HOH HOH . C 3 HOH A 34 93 93 HOH HOH . C 3 HOH A 35 97 97 HOH HOH . C 3 HOH A 36 113 113 HOH HOH . C 3 HOH A 37 122 122 HOH HOH . C 3 HOH A 38 123 123 HOH HOH . C 3 HOH A 39 124 124 HOH HOH . C 3 HOH A 40 125 125 HOH HOH . C 3 HOH A 41 126 126 HOH HOH . C 3 HOH A 42 127 127 HOH HOH . C 3 HOH A 43 130 130 HOH HOH . C 3 HOH A 44 132 132 HOH HOH . C 3 HOH A 45 133 133 HOH HOH . C 3 HOH A 46 134 134 HOH HOH . C 3 HOH A 47 136 136 HOH HOH . C 3 HOH A 48 137 137 HOH HOH . C 3 HOH A 49 138 138 HOH HOH . C 3 HOH A 50 139 139 HOH HOH . C 3 HOH A 51 141 141 HOH HOH . C 3 HOH A 52 142 142 HOH HOH . C 3 HOH A 53 146 146 HOH HOH . C 3 HOH A 54 149 149 HOH HOH . C 3 HOH A 55 150 150 HOH HOH . C 3 HOH A 56 151 151 HOH HOH . C 3 HOH A 57 152 152 HOH HOH . C 3 HOH A 58 153 153 HOH HOH . C 3 HOH A 59 154 154 HOH HOH . C 3 HOH A 60 156 156 HOH HOH . C 3 HOH A 61 157 157 HOH HOH . C 3 HOH A 62 160 160 HOH HOH . C 3 HOH A 63 162 162 HOH HOH . C 3 HOH A 64 164 164 HOH HOH . C 3 HOH A 65 166 166 HOH HOH . C 3 HOH A 66 170 170 HOH HOH . C 3 HOH A 67 172 172 HOH HOH . C 3 HOH A 68 184 184 HOH HOH . C 3 HOH A 69 185 185 HOH HOH . C 3 HOH A 70 186 186 HOH HOH . C 3 HOH A 71 187 187 HOH HOH . C 3 HOH A 72 188 188 HOH HOH . C 3 HOH A 73 189 189 HOH HOH . C 3 HOH A 74 190 190 HOH HOH . C 3 HOH A 75 191 191 HOH HOH . C 3 HOH A 76 192 192 HOH HOH . C 3 HOH A 77 193 193 HOH HOH . C 3 HOH A 78 196 196 HOH HOH . C 3 HOH A 79 197 197 HOH HOH . C 3 HOH A 80 199 199 HOH HOH . C 3 HOH A 81 201 201 HOH HOH . C 3 HOH A 82 202 202 HOH HOH . C 3 HOH A 83 203 203 HOH HOH . C 3 HOH A 84 206 206 HOH HOH . C 3 HOH A 85 207 207 HOH HOH . C 3 HOH A 86 215 215 HOH HOH . C 3 HOH A 87 216 216 HOH HOH . C 3 HOH A 88 1183 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MI1 . . . B 2 -7.647 7.95 16.075 1 19.51 ? C1 MI1 1 A 1 HETATM 2 C C2 MI1 . . . B 2 -6.231 7.461 16.201 1 19.59 ? C2 MI1 1 A 1 HETATM 3 C C4 MI1 . . . B 2 -6.948 5.154 15.512 1 20.69 ? C4 MI1 1 A 1 HETATM 4 C C5 MI1 . . . B 2 -8.365 5.648 15.327 1 19.05 ? C5 MI1 1 A 1 HETATM 5 C C6 MI1 . . . B 2 -8.652 6.802 16.262 1 20.06 ? C6 MI1 1 A 1 HETATM 6 N N3 MI1 . . . B 2 -6.019 6.26 15.442 1 20.78 ? N3 MI1 1 A 1 HETATM 7 O O21 MI1 . . . B 2 -4.028 7.073 14.795 1 20.87 ? O21 MI1 1 A 1 HETATM 8 C C20 MI1 . . . B 2 -4.898 6.225 14.679 1 21.03 ? C20 MI1 1 A 1 HETATM 9 C C22 MI1 . . . B 2 -4.855 5.085 13.695 1 21.52 ? C22 MI1 1 A 1 HETATM 10 C C23 MI1 . . . B 2 -3.785 5.307 12.717 1 22.67 ? C23 MI1 1 A 1 HETATM 11 N N24 MI1 . . . B 2 -2.921 5.54 11.973 1 21.8 ? N24 MI1 1 A 1 HETATM 12 C C7 MI1 . . . B 2 -8.76 6.285 17.687 1 18.15 ? C7 MI1 1 A 1 HETATM 13 N N8 MI1 . . . B 2 -7.876 8.93 17.128 1 20.24 ? N8 MI1 1 A 1 HETATM 14 C C9 MI1 . . . B 2 -7.058 9.057 18.506 1 22.98 ? C9 MI1 1 A 1 HETATM 15 C C10 MI1 . . . B 2 -8.75 10 16.832 1 19.13 ? C10 MI1 1 A 1 HETATM 16 C C15 MI1 . . . B 2 -9.552 10.13 15.706 1 19.35 ? C15 MI1 1 A 1 HETATM 17 C C16 MI1 . . . B 2 -9.796 9.386 14.516 1 18.44 ? C16 MI1 1 A 1 HETATM 18 C C11 MI1 . . . B 2 -10.735 10.07 13.781 1 19.05 ? C11 MI1 1 A 1 HETATM 19 N N12 MI1 . . . B 2 -11.078 11.2 14.475 1 18.76 ? N12 MI1 1 A 1 HETATM 20 C C14 MI1 . . . B 2 -10.366 11.247 15.635 1 19.08 ? C14 MI1 1 A 1 HETATM 21 N N17 MI1 . . . B 2 -10.478 12.218 16.533 1 19.32 ? N17 MI1 1 A 1 HETATM 22 C C18 MI1 . . . B 2 -9.663 11.993 17.559 1 18.93 ? C18 MI1 1 A 1 HETATM 23 N N19 MI1 . . . B 2 -8.833 10.97 17.752 1 19.51 ? N19 MI1 1 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #