data_3LXY # _model_server_result.job_id jIan7ByOHWYWLrXqufqMQQ _model_server_result.datetime_utc '2024-11-05 00:27:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3LXY # _exptl.entry_id 3LXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LXY _cell.length_a 75.939 _cell.length_b 88.105 _cell.length_c 100.511 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 75.939 0 50.2555 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 701 SUC 2 n B FRU 2 B 2 FRU A 701 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . B GLC 1 1_555 B O2 FRU . B FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing metalc ? metalc1 A NE2 HIS 170 A HIS 167 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 A NE2 HIS 270 A HIS 267 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc3 E O HOH . A HOH 345 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc4 E O HOH . A HOH 463 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 E O HOH . A HOH 467 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LXY _atom_sites.fract_transf_matrix[1][1] 0.013168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI A 1 501 501 NI NI . D 4 SO4 A 1 601 601 SO4 SO4 . E 5 HOH A 1 332 2 HOH HOH . E 5 HOH A 2 333 3 HOH HOH . E 5 HOH A 3 334 4 HOH HOH . E 5 HOH A 4 335 5 HOH HOH . E 5 HOH A 5 336 6 HOH HOH . E 5 HOH A 6 337 7 HOH HOH . E 5 HOH A 7 338 9 HOH HOH . E 5 HOH A 8 339 10 HOH HOH . E 5 HOH A 9 340 12 HOH HOH . E 5 HOH A 10 341 13 HOH HOH . E 5 HOH A 11 342 14 HOH HOH . E 5 HOH A 12 343 15 HOH HOH . E 5 HOH A 13 344 16 HOH HOH . E 5 HOH A 14 345 17 HOH HOH . E 5 HOH A 15 346 18 HOH HOH . E 5 HOH A 16 347 19 HOH HOH . E 5 HOH A 17 348 21 HOH HOH . E 5 HOH A 18 349 22 HOH HOH . E 5 HOH A 19 350 25 HOH HOH . E 5 HOH A 20 351 26 HOH HOH . E 5 HOH A 21 352 27 HOH HOH . E 5 HOH A 22 353 28 HOH HOH . E 5 HOH A 23 354 29 HOH HOH . E 5 HOH A 24 355 30 HOH HOH . E 5 HOH A 25 356 31 HOH HOH . E 5 HOH A 26 357 32 HOH HOH . E 5 HOH A 27 358 33 HOH HOH . E 5 HOH A 28 359 34 HOH HOH . E 5 HOH A 29 360 35 HOH HOH . E 5 HOH A 30 361 36 HOH HOH . E 5 HOH A 31 362 37 HOH HOH . E 5 HOH A 32 363 38 HOH HOH . E 5 HOH A 33 364 40 HOH HOH . E 5 HOH A 34 365 42 HOH HOH . E 5 HOH A 35 366 43 HOH HOH . E 5 HOH A 36 367 45 HOH HOH . E 5 HOH A 37 368 46 HOH HOH . E 5 HOH A 38 369 47 HOH HOH . E 5 HOH A 39 370 48 HOH HOH . E 5 HOH A 40 371 50 HOH HOH . E 5 HOH A 41 372 51 HOH HOH . E 5 HOH A 42 373 52 HOH HOH . E 5 HOH A 43 374 53 HOH HOH . E 5 HOH A 44 375 54 HOH HOH . E 5 HOH A 45 376 56 HOH HOH . E 5 HOH A 46 377 57 HOH HOH . E 5 HOH A 47 378 58 HOH HOH . E 5 HOH A 48 379 60 HOH HOH . E 5 HOH A 49 380 61 HOH HOH . E 5 HOH A 50 381 62 HOH HOH . E 5 HOH A 51 382 63 HOH HOH . E 5 HOH A 52 383 64 HOH HOH . E 5 HOH A 53 384 66 HOH HOH . E 5 HOH A 54 385 67 HOH HOH . E 5 HOH A 55 386 68 HOH HOH . E 5 HOH A 56 387 69 HOH HOH . E 5 HOH A 57 388 70 HOH HOH . E 5 HOH A 58 389 71 HOH HOH . E 5 HOH A 59 390 72 HOH HOH . E 5 HOH A 60 391 73 HOH HOH . E 5 HOH A 61 392 74 HOH HOH . E 5 HOH A 62 393 75 HOH HOH . E 5 HOH A 63 394 76 HOH HOH . E 5 HOH A 64 395 78 HOH HOH . E 5 HOH A 65 396 79 HOH HOH . E 5 HOH A 66 397 80 HOH HOH . E 5 HOH A 67 398 81 HOH HOH . E 5 HOH A 68 399 82 HOH HOH . E 5 HOH A 69 400 83 HOH HOH . E 5 HOH A 70 401 84 HOH HOH . E 5 HOH A 71 402 85 HOH HOH . E 5 HOH A 72 403 86 HOH HOH . E 5 HOH A 73 404 87 HOH HOH . E 5 HOH A 74 405 88 HOH HOH . E 5 HOH A 75 406 89 HOH HOH . E 5 HOH A 76 407 90 HOH HOH . E 5 HOH A 77 408 91 HOH HOH . E 5 HOH A 78 409 93 HOH HOH . E 5 HOH A 79 410 94 HOH HOH . E 5 HOH A 80 411 95 HOH HOH . E 5 HOH A 81 412 97 HOH HOH . E 5 HOH A 82 413 98 HOH HOH . E 5 HOH A 83 414 99 HOH HOH . E 5 HOH A 84 415 100 HOH HOH . E 5 HOH A 85 416 101 HOH HOH . E 5 HOH A 86 417 102 HOH HOH . E 5 HOH A 87 418 105 HOH HOH . E 5 HOH A 88 419 106 HOH HOH . E 5 HOH A 89 420 107 HOH HOH . E 5 HOH A 90 421 109 HOH HOH . E 5 HOH A 91 422 111 HOH HOH . E 5 HOH A 92 423 112 HOH HOH . E 5 HOH A 93 424 113 HOH HOH . E 5 HOH A 94 425 114 HOH HOH . E 5 HOH A 95 426 115 HOH HOH . E 5 HOH A 96 427 117 HOH HOH . E 5 HOH A 97 428 118 HOH HOH . E 5 HOH A 98 429 119 HOH HOH . E 5 HOH A 99 430 120 HOH HOH . E 5 HOH A 100 431 121 HOH HOH . E 5 HOH A 101 432 125 HOH HOH . E 5 HOH A 102 433 126 HOH HOH . E 5 HOH A 103 434 127 HOH HOH . E 5 HOH A 104 435 128 HOH HOH . E 5 HOH A 105 436 130 HOH HOH . E 5 HOH A 106 437 131 HOH HOH . E 5 HOH A 107 438 132 HOH HOH . E 5 HOH A 108 439 133 HOH HOH . E 5 HOH A 109 440 134 HOH HOH . E 5 HOH A 110 441 135 HOH HOH . E 5 HOH A 111 442 137 HOH HOH . E 5 HOH A 112 443 139 HOH HOH . E 5 HOH A 113 444 140 HOH HOH . E 5 HOH A 114 445 141 HOH HOH . E 5 HOH A 115 446 142 HOH HOH . E 5 HOH A 116 447 143 HOH HOH . E 5 HOH A 117 448 144 HOH HOH . E 5 HOH A 118 449 145 HOH HOH . E 5 HOH A 119 450 146 HOH HOH . E 5 HOH A 120 451 147 HOH HOH . E 5 HOH A 121 452 148 HOH HOH . E 5 HOH A 122 453 149 HOH HOH . E 5 HOH A 123 454 150 HOH HOH . E 5 HOH A 124 455 151 HOH HOH . E 5 HOH A 125 456 152 HOH HOH . E 5 HOH A 126 457 153 HOH HOH . E 5 HOH A 127 458 154 HOH HOH . E 5 HOH A 128 459 155 HOH HOH . E 5 HOH A 129 460 157 HOH HOH . E 5 HOH A 130 461 158 HOH HOH . E 5 HOH A 131 462 159 HOH HOH . E 5 HOH A 132 463 160 HOH HOH . E 5 HOH A 133 464 162 HOH HOH . E 5 HOH A 134 465 164 HOH HOH . E 5 HOH A 135 466 165 HOH HOH . E 5 HOH A 136 467 166 HOH HOH . E 5 HOH A 137 468 169 HOH HOH . E 5 HOH A 138 469 174 HOH HOH . E 5 HOH A 139 470 176 HOH HOH . E 5 HOH A 140 471 177 HOH HOH . E 5 HOH A 141 472 178 HOH HOH . E 5 HOH A 142 473 180 HOH HOH . E 5 HOH A 143 474 182 HOH HOH . E 5 HOH A 144 475 183 HOH HOH . E 5 HOH A 145 476 184 HOH HOH . E 5 HOH A 146 477 185 HOH HOH . E 5 HOH A 147 478 186 HOH HOH . E 5 HOH A 148 479 187 HOH HOH . E 5 HOH A 149 480 188 HOH HOH . E 5 HOH A 150 481 189 HOH HOH . E 5 HOH A 151 482 190 HOH HOH . E 5 HOH A 152 483 191 HOH HOH . E 5 HOH A 153 484 192 HOH HOH . E 5 HOH A 154 485 193 HOH HOH . E 5 HOH A 155 486 194 HOH HOH . E 5 HOH A 156 487 195 HOH HOH . E 5 HOH A 157 488 196 HOH HOH . E 5 HOH A 158 489 197 HOH HOH . E 5 HOH A 159 490 198 HOH HOH . E 5 HOH A 160 491 200 HOH HOH . E 5 HOH A 161 492 201 HOH HOH . E 5 HOH A 162 493 203 HOH HOH . E 5 HOH A 163 494 204 HOH HOH . E 5 HOH A 164 495 205 HOH HOH . E 5 HOH A 165 496 206 HOH HOH . E 5 HOH A 166 497 207 HOH HOH . E 5 HOH A 167 498 208 HOH HOH . E 5 HOH A 168 499 209 HOH HOH . E 5 HOH A 169 500 216 HOH HOH . E 5 HOH A 170 502 219 HOH HOH . E 5 HOH A 171 503 221 HOH HOH . E 5 HOH A 172 504 222 HOH HOH . E 5 HOH A 173 505 223 HOH HOH . E 5 HOH A 174 506 224 HOH HOH . E 5 HOH A 175 507 227 HOH HOH . E 5 HOH A 176 508 229 HOH HOH . E 5 HOH A 177 509 230 HOH HOH . E 5 HOH A 178 510 231 HOH HOH . E 5 HOH A 179 511 232 HOH HOH . E 5 HOH A 180 512 233 HOH HOH . E 5 HOH A 181 513 235 HOH HOH . E 5 HOH A 182 514 236 HOH HOH . E 5 HOH A 183 515 237 HOH HOH . E 5 HOH A 184 516 238 HOH HOH . E 5 HOH A 185 517 243 HOH HOH . E 5 HOH A 186 518 244 HOH HOH . E 5 HOH A 187 519 245 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.834 _atom_site.Cartn_y 9.207 _atom_site.Cartn_z 36.777 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #