data_3LY5 # _model_server_result.job_id deqbF5MaphCNEaiAE6ELjQ _model_server_result.datetime_utc '2024-11-22 22:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ly5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3LY5 # _exptl.entry_id 3LY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LY5 _cell.length_a 41.34 _cell.length_b 41.34 _cell.length_c 230.541 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 98 A ALA 223 1_555 E MG MG . A MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A OE2 GLU 209 A GLU 334 1_555 E MG MG . A MG 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc3 A OE2 GLU 221 A GLU 346 1_555 D MG MG . A MG 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3LY5 _atom_sites.fract_transf_matrix[1][1] 0.02419 _atom_sites.fract_transf_matrix[1][2] 0.013966 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 1 1 PO4 PO4 . D 3 MG A 1 388 1 MG MG . E 3 MG A 1 389 1 MG MG . F 4 SCN A 1 390 1 SCN SCN . G 4 SCN B 1 2 2 SCN SCN . H 5 HOH A 1 2 2 HOH HOH . H 5 HOH A 2 5 5 HOH HOH . H 5 HOH A 3 7 7 HOH HOH . H 5 HOH A 4 15 15 HOH HOH . H 5 HOH A 5 16 16 HOH HOH . H 5 HOH A 6 18 18 HOH HOH . H 5 HOH A 7 19 19 HOH HOH . H 5 HOH A 8 22 22 HOH HOH . H 5 HOH A 9 23 23 HOH HOH . H 5 HOH A 10 25 25 HOH HOH . H 5 HOH A 11 27 27 HOH HOH . H 5 HOH A 12 28 28 HOH HOH . H 5 HOH A 13 29 29 HOH HOH . H 5 HOH A 14 30 30 HOH HOH . H 5 HOH A 15 31 31 HOH HOH . H 5 HOH A 16 32 32 HOH HOH . H 5 HOH A 17 34 34 HOH HOH . H 5 HOH A 18 37 37 HOH HOH . H 5 HOH A 19 38 38 HOH HOH . H 5 HOH A 20 39 39 HOH HOH . H 5 HOH A 21 45 45 HOH HOH . H 5 HOH A 22 48 48 HOH HOH . H 5 HOH A 23 49 49 HOH HOH . H 5 HOH A 24 50 50 HOH HOH . H 5 HOH A 25 52 52 HOH HOH . I 5 HOH B 1 6 6 HOH HOH . I 5 HOH B 2 8 8 HOH HOH . I 5 HOH B 3 10 10 HOH HOH . I 5 HOH B 4 11 11 HOH HOH . I 5 HOH B 5 12 12 HOH HOH . I 5 HOH B 6 13 13 HOH HOH . I 5 HOH B 7 14 14 HOH HOH . I 5 HOH B 8 17 17 HOH HOH . I 5 HOH B 9 20 20 HOH HOH . I 5 HOH B 10 21 21 HOH HOH . I 5 HOH B 11 24 24 HOH HOH . I 5 HOH B 12 33 33 HOH HOH . I 5 HOH B 13 40 40 HOH HOH . I 5 HOH B 14 42 42 HOH HOH . I 5 HOH B 15 46 46 HOH HOH . I 5 HOH B 16 47 47 HOH HOH . I 5 HOH B 17 51 51 HOH HOH . I 5 HOH B 18 53 53 HOH HOH . I 5 HOH B 19 55 55 HOH HOH . I 5 HOH B 20 56 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 2 -0.347 -1.98 -13.894 1 16.36 ? P PO4 1 A 1 HETATM 2 O O1 PO4 . . . C 2 0.768 -1.002 -14.232 1 16.33 ? O1 PO4 1 A 1 HETATM 3 O O2 PO4 . . . C 2 -1.51 -1.831 -14.842 1 15.11 ? O2 PO4 1 A 1 HETATM 4 O O3 PO4 . . . C 2 0.22 -3.373 -14.056 1 16.58 ? O3 PO4 1 A 1 HETATM 5 O O4 PO4 . . . C 2 -0.825 -1.746 -12.472 1 14.64 ? O4 PO4 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #