data_3LY6 # _model_server_result.job_id 9BbcwifirS2qVRbRBo6hNA _model_server_result.datetime_utc '2024-11-04 20:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ly6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 3LY6 # _exptl.entry_id 3LY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LY6 _cell.length_a 134.175 _cell.length_b 215.759 _cell.length_c 165.956 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,E 2 1 C,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 230 A CYS 230 1_555 A SG CYS 370 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 230 B CYS 230 1_555 B SG CYS 370 B CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 230 C CYS 230 1_555 C SG CYS 370 C CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3LY6 _atom_sites.fract_transf_matrix[1][1] 0.007453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ATP A 1 700 700 ATP ATP . E 2 ATP B 1 701 701 ATP ATP . F 2 ATP C 1 702 702 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 42.853 66.219 29.58 1 72.17 ? PG ATP 701 B 1 HETATM 2 O O1G ATP . . . E 2 41.715 65.919 30.68 1 72.17 ? O1G ATP 701 B 1 HETATM 3 O O2G ATP . . . E 2 42.389 65.991 28.194 1 72.17 ? O2G ATP 701 B 1 HETATM 4 O O3G ATP . . . E 2 43.33 67.737 29.837 1 72.17 ? O3G ATP 701 B 1 HETATM 5 P PB ATP . . . E 2 44.229 63.831 29.299 1 72.17 ? PB ATP 701 B 1 HETATM 6 O O1B ATP . . . E 2 43.457 63.936 27.89 1 72.17 ? O1B ATP 701 B 1 HETATM 7 O O2B ATP . . . E 2 45.638 63.406 29.146 1 72.17 ? O2B ATP 701 B 1 HETATM 8 O O3B ATP . . . E 2 44.1 65.283 29.978 1 72.17 ? O3B ATP 701 B 1 HETATM 9 P PA ATP . . . E 2 41.901 62.303 29.842 1 72.17 ? PA ATP 701 B 1 HETATM 10 O O1A ATP . . . E 2 41.247 61.878 31.098 1 72.17 ? O1A ATP 701 B 1 HETATM 11 O O2A ATP . . . E 2 41.222 63.328 29.016 1 72.17 ? O2A ATP 701 B 1 HETATM 12 O O3A ATP . . . E 2 43.375 62.829 30.227 1 72.17 ? O3A ATP 701 B 1 HETATM 13 O O5' ATP . . . E 2 42.199 61.018 28.916 1 72.17 ? O5' ATP 701 B 1 HETATM 14 C C5' ATP . . . E 2 42.402 61.207 27.512 1 72.17 ? C5' ATP 701 B 1 HETATM 15 C C4' ATP . . . E 2 42.698 59.91 26.753 1 72.17 ? C4' ATP 701 B 1 HETATM 16 O O4' ATP . . . E 2 43.724 59.193 27.463 1 72.17 ? O4' ATP 701 B 1 HETATM 17 C C3' ATP . . . E 2 41.489 58.971 26.724 1 72.17 ? C3' ATP 701 B 1 HETATM 18 O O3' ATP . . . E 2 41.661 57.996 25.691 1 72.17 ? O3' ATP 701 B 1 HETATM 19 C C2' ATP . . . E 2 41.651 58.303 28.086 1 72.17 ? C2' ATP 701 B 1 HETATM 20 O O2' ATP . . . E 2 40.915 57.078 28.103 1 72.17 ? O2' ATP 701 B 1 HETATM 21 C C1' ATP . . . E 2 43.143 57.988 27.989 1 72.17 ? C1' ATP 701 B 1 HETATM 22 N N9 ATP . . . E 2 43.69 57.648 29.324 1 72.17 ? N9 ATP 701 B 1 HETATM 23 C C8 ATP . . . E 2 43.696 58.451 30.383 1 72.17 ? C8 ATP 701 B 1 HETATM 24 N N7 ATP . . . E 2 44.236 57.819 31.423 1 72.17 ? N7 ATP 701 B 1 HETATM 25 C C5 ATP . . . E 2 44.58 56.597 31.019 1 72.17 ? C5 ATP 701 B 1 HETATM 26 C C6 ATP . . . E 2 45.153 55.504 31.646 1 72.17 ? C6 ATP 701 B 1 HETATM 27 N N6 ATP . . . E 2 45.483 55.564 32.935 1 72.17 ? N6 ATP 701 B 1 HETATM 28 N N1 ATP . . . E 2 45.363 54.384 30.938 1 72.17 ? N1 ATP 701 B 1 HETATM 29 C C2 ATP . . . E 2 45.024 54.317 29.658 1 72.17 ? C2 ATP 701 B 1 HETATM 30 N N3 ATP . . . E 2 44.477 55.337 29.033 1 72.17 ? N3 ATP 701 B 1 HETATM 31 C C4 ATP . . . E 2 44.238 56.492 29.679 1 72.17 ? C4 ATP 701 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #