data_3LYI # _model_server_result.job_id Ok3eXs5ybi2fKH7Vt9Qm8g _model_server_result.datetime_utc '2024-11-07 10:49:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1500}' # _entry.id 3LYI # _exptl.entry_id 3LYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 169.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYSTEINESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LYI _cell.length_a 45.029 _cell.length_b 46.085 _cell.length_c 130.712 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H7 N O5 S' _chem_comp.formula_weight 169.156 _chem_comp.id OCS _chem_comp.mon_nstd_flag n _chem_comp.name 'CYSTEINESULFONIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA OCS sing 237 n n N H OCS sing 238 n n N H2 OCS sing 239 n n CA CB OCS sing 240 n n CA C OCS sing 241 n n CA HA OCS sing 242 n n CB SG OCS sing 243 n n CB HB2 OCS sing 244 n n CB HB3 OCS sing 245 n n SG OD1 OCS doub 246 n n SG OD2 OCS sing 247 n n SG OD3 OCS doub 248 n n C O OCS doub 249 n n C OXT OCS sing 250 n n OXT HXT OCS sing 251 n n OD2 HD2 OCS sing 252 n n # _atom_sites.entry_id 3LYI _atom_sites.fract_transf_matrix[1][1] 0.022208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OCS A 1 1500 1500 OCS OCS . D 3 HOH A 1 1 1 HOH HOH . D 3 HOH A 2 2 2 HOH HOH . D 3 HOH A 3 3 3 HOH HOH . D 3 HOH A 4 4 4 HOH HOH . D 3 HOH A 5 5 5 HOH HOH . D 3 HOH A 6 6 6 HOH HOH . D 3 HOH A 7 7 7 HOH HOH . D 3 HOH A 8 8 8 HOH HOH . D 3 HOH A 9 9 9 HOH HOH . D 3 HOH A 10 10 10 HOH HOH . D 3 HOH A 11 11 11 HOH HOH . D 3 HOH A 12 12 12 HOH HOH . D 3 HOH A 13 13 13 HOH HOH . D 3 HOH A 14 14 14 HOH HOH . D 3 HOH A 15 15 15 HOH HOH . D 3 HOH A 16 16 16 HOH HOH . D 3 HOH A 17 17 17 HOH HOH . D 3 HOH A 18 18 18 HOH HOH . D 3 HOH A 19 19 19 HOH HOH . D 3 HOH A 20 22 22 HOH HOH . D 3 HOH A 21 23 23 HOH HOH . D 3 HOH A 22 24 24 HOH HOH . D 3 HOH A 23 25 25 HOH HOH . D 3 HOH A 24 26 26 HOH HOH . D 3 HOH A 25 27 27 HOH HOH . D 3 HOH A 26 28 28 HOH HOH . D 3 HOH A 27 29 29 HOH HOH . D 3 HOH A 28 30 30 HOH HOH . D 3 HOH A 29 31 31 HOH HOH . D 3 HOH A 30 32 32 HOH HOH . D 3 HOH A 31 33 33 HOH HOH . D 3 HOH A 32 34 34 HOH HOH . D 3 HOH A 33 35 35 HOH HOH . D 3 HOH A 34 36 36 HOH HOH . D 3 HOH A 35 37 37 HOH HOH . D 3 HOH A 36 38 38 HOH HOH . D 3 HOH A 37 39 39 HOH HOH . D 3 HOH A 38 40 40 HOH HOH . D 3 HOH A 39 41 41 HOH HOH . D 3 HOH A 40 42 42 HOH HOH . D 3 HOH A 41 43 43 HOH HOH . D 3 HOH A 42 44 44 HOH HOH . D 3 HOH A 43 45 45 HOH HOH . D 3 HOH A 44 47 47 HOH HOH . D 3 HOH A 45 48 48 HOH HOH . D 3 HOH A 46 49 49 HOH HOH . D 3 HOH A 47 50 50 HOH HOH . D 3 HOH A 48 52 52 HOH HOH . D 3 HOH A 49 53 53 HOH HOH . D 3 HOH A 50 54 54 HOH HOH . D 3 HOH A 51 55 55 HOH HOH . D 3 HOH A 52 56 56 HOH HOH . D 3 HOH A 53 58 58 HOH HOH . D 3 HOH A 54 59 59 HOH HOH . D 3 HOH A 55 60 60 HOH HOH . D 3 HOH A 56 61 61 HOH HOH . D 3 HOH A 57 62 62 HOH HOH . D 3 HOH A 58 63 63 HOH HOH . D 3 HOH A 59 64 64 HOH HOH . D 3 HOH A 60 65 65 HOH HOH . D 3 HOH A 61 66 66 HOH HOH . D 3 HOH A 62 67 67 HOH HOH . D 3 HOH A 63 68 68 HOH HOH . D 3 HOH A 64 69 69 HOH HOH . D 3 HOH A 65 71 71 HOH HOH . D 3 HOH A 66 72 72 HOH HOH . D 3 HOH A 67 73 73 HOH HOH . D 3 HOH A 68 74 74 HOH HOH . D 3 HOH A 69 75 75 HOH HOH . D 3 HOH A 70 76 76 HOH HOH . D 3 HOH A 71 77 77 HOH HOH . D 3 HOH A 72 78 78 HOH HOH . E 3 HOH B 1 20 20 HOH HOH . E 3 HOH B 2 21 21 HOH HOH . E 3 HOH B 3 46 46 HOH HOH . E 3 HOH B 4 51 51 HOH HOH . E 3 HOH B 5 57 57 HOH HOH . E 3 HOH B 6 70 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N OCS . . . C 2 19.726 5.683 -30.607 1 56.66 ? N OCS 1500 A 1 HETATM 2 C CA OCS . . . C 2 20.746 6.556 -31.205 1 60.84 ? CA OCS 1500 A 1 HETATM 3 C CB OCS . . . C 2 20.618 7.982 -30.586 1 63.27 ? CB OCS 1500 A 1 HETATM 4 S SG OCS . . . C 2 19.552 9.239 -31.457 1 68.82 ? SG OCS 1500 A 1 HETATM 5 C C OCS . . . C 2 22.181 5.894 -31.046 1 59.15 ? C OCS 1500 A 1 HETATM 6 O O OCS . . . C 2 22.803 5.567 -32.084 1 54.51 ? O OCS 1500 A 1 HETATM 7 O OXT OCS . . . C 2 22.628 5.699 -29.898 1 57.97 ? OXT OCS 1500 A 1 HETATM 8 O OD1 OCS . . . C 2 20.393 10.079 -32.284 1 64.12 ? OD1 OCS 1500 A 1 HETATM 9 O OD2 OCS . . . C 2 18.513 8.571 -32.313 1 67.25 ? OD2 OCS 1500 A 1 HETATM 10 O OD3 OCS . . . C 2 18.85 10.135 -30.484 1 65.49 ? OD3 OCS 1500 A 1 # _model_server_stats.io_time_ms 110 _model_server_stats.parse_time_ms 80 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #