data_3LYQ # _model_server_result.job_id tHUabS-Dgz00z5K6w7QYNQ _model_server_result.datetime_utc '2024-10-18 21:28:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3LYQ # _exptl.entry_id 3LYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LYQ _cell.length_a 114.08 _cell.length_b 114.08 _cell.length_c 88.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OB1 FLC . A FLC 301 1_555 D FE1 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? metalc ? metalc2 C OA1 FLC . A FLC 301 1_555 D FE2 FEO . A FEO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc3 D FE2 FEO . A FEO 401 1_555 F OA2 FLC . B FLC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc4 D FE2 FEO . A FEO 401 1_555 F OHB FLC . B FLC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 85 n n CAC OA1 FLC doub 86 n n CAC OA2 FLC sing 87 n n CA CB FLC sing 88 n n CA HA1 FLC sing 89 n n CA HA2 FLC sing 90 n n CB CBC FLC sing 91 n n CB CG FLC sing 92 n n CB OHB FLC sing 93 n n CBC OB1 FLC doub 94 n n CBC OB2 FLC sing 95 n n CG CGC FLC sing 96 n n CG HG1 FLC sing 97 n n CG HG2 FLC sing 98 n n CGC OG1 FLC doub 99 n n CGC OG2 FLC sing 100 n n OHB HOB FLC sing 101 n n # _atom_sites.entry_id 3LYQ _atom_sites.fract_transf_matrix[1][1] 0.008766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FLC A 1 301 301 FLC FLC . D 3 FEO A 1 401 401 FEO FEO . E 3 FEO A 1 402 402 FEO FEO . F 2 FLC B 1 302 302 FLC FLC . G 2 FLC B 1 303 303 FLC FLC . H 4 HOH A 1 189 2 HOH HOH . H 4 HOH A 2 190 3 HOH HOH . H 4 HOH A 3 191 4 HOH HOH . H 4 HOH A 4 192 6 HOH HOH . H 4 HOH A 5 193 8 HOH HOH . H 4 HOH A 6 194 11 HOH HOH . H 4 HOH A 7 195 15 HOH HOH . H 4 HOH A 8 196 17 HOH HOH . H 4 HOH A 9 197 18 HOH HOH . H 4 HOH A 10 198 21 HOH HOH . H 4 HOH A 11 199 24 HOH HOH . H 4 HOH A 12 200 28 HOH HOH . H 4 HOH A 13 201 31 HOH HOH . H 4 HOH A 14 202 32 HOH HOH . H 4 HOH A 15 203 36 HOH HOH . H 4 HOH A 16 204 38 HOH HOH . H 4 HOH A 17 205 44 HOH HOH . H 4 HOH A 18 206 47 HOH HOH . H 4 HOH A 19 207 49 HOH HOH . H 4 HOH A 20 208 52 HOH HOH . H 4 HOH A 21 209 54 HOH HOH . H 4 HOH A 22 210 67 HOH HOH . H 4 HOH A 23 211 69 HOH HOH . H 4 HOH A 24 212 71 HOH HOH . H 4 HOH A 25 213 72 HOH HOH . H 4 HOH A 26 214 76 HOH HOH . H 4 HOH A 27 215 77 HOH HOH . H 4 HOH A 28 216 79 HOH HOH . H 4 HOH A 29 217 83 HOH HOH . H 4 HOH A 30 218 86 HOH HOH . H 4 HOH A 31 219 89 HOH HOH . H 4 HOH A 32 220 92 HOH HOH . H 4 HOH A 33 221 93 HOH HOH . H 4 HOH A 34 222 94 HOH HOH . H 4 HOH A 35 223 96 HOH HOH . H 4 HOH A 36 224 98 HOH HOH . H 4 HOH A 37 225 99 HOH HOH . H 4 HOH A 38 227 101 HOH HOH . H 4 HOH A 39 228 102 HOH HOH . H 4 HOH A 40 229 103 HOH HOH . H 4 HOH A 41 230 104 HOH HOH . H 4 HOH A 42 231 105 HOH HOH . H 4 HOH A 43 233 110 HOH HOH . H 4 HOH A 44 234 111 HOH HOH . H 4 HOH A 45 235 112 HOH HOH . H 4 HOH A 46 236 113 HOH HOH . H 4 HOH A 47 237 114 HOH HOH . H 4 HOH A 48 238 115 HOH HOH . H 4 HOH A 49 239 116 HOH HOH . I 4 HOH B 1 189 1 HOH HOH . I 4 HOH B 2 190 5 HOH HOH . I 4 HOH B 3 191 7 HOH HOH . I 4 HOH B 4 192 9 HOH HOH . I 4 HOH B 5 193 10 HOH HOH . I 4 HOH B 6 194 12 HOH HOH . I 4 HOH B 7 195 13 HOH HOH . I 4 HOH B 8 196 16 HOH HOH . I 4 HOH B 9 197 19 HOH HOH . I 4 HOH B 10 198 20 HOH HOH . I 4 HOH B 11 199 22 HOH HOH . I 4 HOH B 12 200 23 HOH HOH . I 4 HOH B 13 201 25 HOH HOH . I 4 HOH B 14 202 26 HOH HOH . I 4 HOH B 15 203 27 HOH HOH . I 4 HOH B 16 204 29 HOH HOH . I 4 HOH B 17 205 30 HOH HOH . I 4 HOH B 18 206 33 HOH HOH . I 4 HOH B 19 207 34 HOH HOH . I 4 HOH B 20 208 35 HOH HOH . I 4 HOH B 21 209 37 HOH HOH . I 4 HOH B 22 210 39 HOH HOH . I 4 HOH B 23 211 41 HOH HOH . I 4 HOH B 24 212 42 HOH HOH . I 4 HOH B 25 213 43 HOH HOH . I 4 HOH B 26 214 45 HOH HOH . I 4 HOH B 27 215 46 HOH HOH . I 4 HOH B 28 216 48 HOH HOH . I 4 HOH B 29 217 50 HOH HOH . I 4 HOH B 30 218 51 HOH HOH . I 4 HOH B 31 219 53 HOH HOH . I 4 HOH B 32 220 62 HOH HOH . I 4 HOH B 33 221 63 HOH HOH . I 4 HOH B 34 222 64 HOH HOH . I 4 HOH B 35 223 65 HOH HOH . I 4 HOH B 36 224 66 HOH HOH . I 4 HOH B 37 225 68 HOH HOH . I 4 HOH B 38 226 100 HOH HOH . I 4 HOH B 39 227 73 HOH HOH . I 4 HOH B 40 228 74 HOH HOH . I 4 HOH B 41 229 75 HOH HOH . I 4 HOH B 42 230 80 HOH HOH . I 4 HOH B 43 231 81 HOH HOH . I 4 HOH B 44 232 108 HOH HOH . I 4 HOH B 45 233 85 HOH HOH . I 4 HOH B 46 234 88 HOH HOH . I 4 HOH B 47 235 90 HOH HOH . I 4 HOH B 48 236 95 HOH HOH . I 4 HOH B 49 237 97 HOH HOH . I 4 HOH B 50 238 106 HOH HOH . I 4 HOH B 51 239 107 HOH HOH . I 4 HOH B 52 240 109 HOH HOH . I 4 HOH B 53 241 117 HOH HOH . I 4 HOH B 54 242 118 HOH HOH . I 4 HOH B 55 243 119 HOH HOH . I 4 HOH B 56 244 70 HOH HOH . I 4 HOH B 57 245 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . C 2 32.182 -31.513 2.378 1 53.04 ? CAC FLC 301 A 1 HETATM 2 C CA FLC . . . C 2 30.85 -31.876 1.836 1 54.97 ? CA FLC 301 A 1 HETATM 3 C CB FLC . . . C 2 30.365 -33.079 2.548 1 56.99 ? CB FLC 301 A 1 HETATM 4 C CBC FLC . . . C 2 31.4 -34.237 2.557 1 56.21 ? CBC FLC 301 A 1 HETATM 5 C CG FLC . . . C 2 29.035 -33.352 1.809 1 59.51 ? CG FLC 301 A 1 HETATM 6 C CGC FLC . . . C 2 28.875 -33.156 0.287 1 62.24 ? CGC FLC 301 A 1 HETATM 7 O OA1 FLC . . . C 2 32.52 -31.765 3.564 1 50.77 ? OA1 FLC 301 A 1 HETATM 8 O OA2 FLC . . . C 2 32.865 -30.946 1.507 1 52.14 ? OA2 FLC 301 A 1 HETATM 9 O OB1 FLC . . . C 2 31.983 -34.492 1.483 1 58.66 ? OB1 FLC 301 A 1 HETATM 10 O OB2 FLC . . . C 2 31.763 -34.872 3.596 1 48.4 ? OB2 FLC 301 A 1 HETATM 11 O OG1 FLC . . . C 2 28.844 -32.056 -0.343 1 61.44 ? OG1 FLC 301 A 1 HETATM 12 O OG2 FLC . . . C 2 28.7 -34.208 -0.349 1 65.56 ? OG2 FLC 301 A 1 HETATM 13 O OHB FLC . . . C 2 30.235 -32.419 3.844 1 56.84 ? OHB FLC 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #