data_3M05 # _model_server_result.job_id b94RqQRwaRpCtiWnMs6UCA _model_server_result.datetime_utc '2024-11-18 13:53:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m05 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":112}' # _entry.id 3M05 # _exptl.entry_id 3M05 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M05 _cell.length_a 119.774 _cell.length_b 119.774 _cell.length_c 119.349 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,D,E,J 2 1,2 B,F,K 3 1 C,G,H,I,L 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 119.349 3 'crystal symmetry operation' 3_654 -y+3/2,x+1/2,z-1/4 0 -1 0 1 0 0 0 0 1 179.661 59.887 -29.83725 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ALA 5 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C PHE 49 A PHE 46 1_555 A N MSE 50 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 50 A MSE 47 1_555 A N ILE 51 A ILE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale5 A C PHE 75 A PHE 72 1_555 A N MSE 76 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 76 A MSE 73 1_555 A N THR 77 A THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 B C MSE 4 B MSE 1 1_555 B N ALA 5 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 B C PHE 49 B PHE 46 1_555 B N MSE 50 B MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 B C MSE 50 B MSE 47 1_555 B N ILE 51 B ILE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale11 B C PHE 75 B PHE 72 1_555 B N MSE 76 B MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 76 B MSE 73 1_555 B N THR 77 B THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 C C MSE 4 C MSE 1 1_555 C N ALA 5 C ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 C C PHE 49 C PHE 46 1_555 C N MSE 50 C MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale15 C C MSE 50 C MSE 47 1_555 C N ILE 51 C ILE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale16 C C PHE 75 C PHE 72 1_555 C N MSE 76 C MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 C C MSE 76 C MSE 73 1_555 C N THR 77 C THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 277 n n S O2 SO4 doub 278 n n S O3 SO4 sing 279 n n S O4 SO4 sing 280 n n # _atom_sites.entry_id 3M05 _atom_sites.fract_transf_matrix[1][1] 0.008349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 112 1 SO4 SO4 . E 2 SO4 A 1 113 5 SO4 SO4 . F 2 SO4 B 1 112 6 SO4 SO4 . G 2 SO4 C 1 112 2 SO4 SO4 . H 2 SO4 C 1 113 3 SO4 SO4 . I 2 SO4 C 1 114 4 SO4 SO4 . J 3 HOH A 1 114 2 HOH HOH . J 3 HOH A 2 115 3 HOH HOH . K 3 HOH B 1 113 1 HOH HOH . K 3 HOH B 2 114 4 HOH HOH . L 3 HOH C 1 115 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 80.669 82.76 56.323 0.6 82.95 ? S SO4 112 A 1 HETATM 2 O O1 SO4 . . . D 2 81.311 83.998 56.71 0.6 82.56 ? O1 SO4 112 A 1 HETATM 3 O O2 SO4 . . . D 2 80.15 82.873 54.967 0.6 77.96 ? O2 SO4 112 A 1 HETATM 4 O O3 SO4 . . . D 2 81.65 81.694 56.458 0.6 72.87 ? O3 SO4 112 A 1 HETATM 5 O O4 SO4 . . . D 2 79.533 82.525 57.193 0.6 93.69 ? O4 SO4 112 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #