data_3M09 # _model_server_result.job_id Gun3Li-je3_d-2wgQLB-1Q _model_server_result.datetime_utc '2025-02-23 15:08:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 3M09 # _exptl.entry_id 3M09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M09 _cell.length_a 79.18 _cell.length_b 79.18 _cell.length_c 107.88 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3M09 _atom_sites.fract_transf_matrix[1][1] 0.012629 _atom_sites.fract_transf_matrix[1][2] 0.007292 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RAR A 1 200 200 RAR RAR . C 3 NAP A 1 201 201 NAP NAP . D 4 GOL A 1 202 202 GOL GOL . E 5 HOH A 1 162 162 HOH HOH . E 5 HOH A 2 163 163 HOH HOH . E 5 HOH A 3 164 164 HOH HOH . E 5 HOH A 4 165 165 HOH HOH . E 5 HOH A 5 166 166 HOH HOH . E 5 HOH A 6 167 167 HOH HOH . E 5 HOH A 7 168 168 HOH HOH . E 5 HOH A 8 169 169 HOH HOH . E 5 HOH A 9 170 170 HOH HOH . E 5 HOH A 10 171 171 HOH HOH . E 5 HOH A 11 172 172 HOH HOH . E 5 HOH A 12 173 173 HOH HOH . E 5 HOH A 13 174 174 HOH HOH . E 5 HOH A 14 175 175 HOH HOH . E 5 HOH A 15 176 176 HOH HOH . E 5 HOH A 16 177 177 HOH HOH . E 5 HOH A 17 178 178 HOH HOH . E 5 HOH A 18 179 179 HOH HOH . E 5 HOH A 19 180 180 HOH HOH . E 5 HOH A 20 181 181 HOH HOH . E 5 HOH A 21 182 182 HOH HOH . E 5 HOH A 22 183 183 HOH HOH . E 5 HOH A 23 184 184 HOH HOH . E 5 HOH A 24 185 185 HOH HOH . E 5 HOH A 25 186 186 HOH HOH . E 5 HOH A 26 187 187 HOH HOH . E 5 HOH A 27 188 188 HOH HOH . E 5 HOH A 28 189 189 HOH HOH . E 5 HOH A 29 190 190 HOH HOH . E 5 HOH A 30 191 191 HOH HOH . E 5 HOH A 31 192 192 HOH HOH . E 5 HOH A 32 193 193 HOH HOH . E 5 HOH A 33 194 194 HOH HOH . E 5 HOH A 34 195 195 HOH HOH . E 5 HOH A 35 196 196 HOH HOH . E 5 HOH A 36 197 197 HOH HOH . E 5 HOH A 37 198 198 HOH HOH . E 5 HOH A 38 199 199 HOH HOH . E 5 HOH A 39 203 203 HOH HOH . E 5 HOH A 40 204 204 HOH HOH . E 5 HOH A 41 205 205 HOH HOH . E 5 HOH A 42 206 206 HOH HOH . E 5 HOH A 43 207 207 HOH HOH . E 5 HOH A 44 208 208 HOH HOH . E 5 HOH A 45 209 209 HOH HOH . E 5 HOH A 46 210 210 HOH HOH . E 5 HOH A 47 211 211 HOH HOH . E 5 HOH A 48 212 212 HOH HOH . E 5 HOH A 49 213 213 HOH HOH . E 5 HOH A 50 214 214 HOH HOH . E 5 HOH A 51 215 215 HOH HOH . E 5 HOH A 52 216 216 HOH HOH . E 5 HOH A 53 217 217 HOH HOH . E 5 HOH A 54 218 218 HOH HOH . E 5 HOH A 55 219 219 HOH HOH . E 5 HOH A 56 220 220 HOH HOH . E 5 HOH A 57 221 221 HOH HOH . E 5 HOH A 58 222 222 HOH HOH . E 5 HOH A 59 223 223 HOH HOH . E 5 HOH A 60 224 224 HOH HOH . E 5 HOH A 61 225 225 HOH HOH . E 5 HOH A 62 226 226 HOH HOH . E 5 HOH A 63 227 227 HOH HOH . E 5 HOH A 64 228 228 HOH HOH . E 5 HOH A 65 229 229 HOH HOH . E 5 HOH A 66 230 230 HOH HOH . E 5 HOH A 67 231 231 HOH HOH . E 5 HOH A 68 232 232 HOH HOH . E 5 HOH A 69 233 233 HOH HOH . E 5 HOH A 70 234 234 HOH HOH . E 5 HOH A 71 235 235 HOH HOH . E 5 HOH A 72 236 236 HOH HOH . E 5 HOH A 73 237 237 HOH HOH . E 5 HOH A 74 238 238 HOH HOH . E 5 HOH A 75 239 239 HOH HOH . E 5 HOH A 76 240 240 HOH HOH . E 5 HOH A 77 241 241 HOH HOH . E 5 HOH A 78 242 242 HOH HOH . E 5 HOH A 79 243 243 HOH HOH . E 5 HOH A 80 244 244 HOH HOH . E 5 HOH A 81 245 245 HOH HOH . E 5 HOH A 82 246 246 HOH HOH . E 5 HOH A 83 247 247 HOH HOH . E 5 HOH A 84 248 248 HOH HOH . E 5 HOH A 85 249 249 HOH HOH . E 5 HOH A 86 250 250 HOH HOH . E 5 HOH A 87 251 251 HOH HOH . E 5 HOH A 88 252 252 HOH HOH . E 5 HOH A 89 253 253 HOH HOH . E 5 HOH A 90 254 254 HOH HOH . E 5 HOH A 91 255 255 HOH HOH . E 5 HOH A 92 256 256 HOH HOH . E 5 HOH A 93 257 257 HOH HOH . E 5 HOH A 94 258 258 HOH HOH . E 5 HOH A 95 259 259 HOH HOH . E 5 HOH A 96 260 260 HOH HOH . E 5 HOH A 97 261 261 HOH HOH . E 5 HOH A 98 262 262 HOH HOH . E 5 HOH A 99 263 263 HOH HOH . E 5 HOH A 100 264 264 HOH HOH . E 5 HOH A 101 265 265 HOH HOH . E 5 HOH A 102 266 266 HOH HOH . E 5 HOH A 103 267 267 HOH HOH . E 5 HOH A 104 268 268 HOH HOH . E 5 HOH A 105 269 269 HOH HOH . E 5 HOH A 106 270 270 HOH HOH . E 5 HOH A 107 271 271 HOH HOH . E 5 HOH A 108 272 272 HOH HOH . E 5 HOH A 109 273 273 HOH HOH . E 5 HOH A 110 274 274 HOH HOH . E 5 HOH A 111 275 275 HOH HOH . E 5 HOH A 112 276 276 HOH HOH . E 5 HOH A 113 277 277 HOH HOH . E 5 HOH A 114 278 278 HOH HOH . E 5 HOH A 115 279 279 HOH HOH . E 5 HOH A 116 280 280 HOH HOH . E 5 HOH A 117 281 281 HOH HOH . E 5 HOH A 118 282 282 HOH HOH . E 5 HOH A 119 283 283 HOH HOH . E 5 HOH A 120 284 284 HOH HOH . E 5 HOH A 121 285 285 HOH HOH . E 5 HOH A 122 286 286 HOH HOH . E 5 HOH A 123 287 287 HOH HOH . E 5 HOH A 124 288 288 HOH HOH . E 5 HOH A 125 289 289 HOH HOH . E 5 HOH A 126 290 290 HOH HOH . E 5 HOH A 127 291 291 HOH HOH . E 5 HOH A 128 292 292 HOH HOH . E 5 HOH A 129 293 293 HOH HOH . E 5 HOH A 130 294 294 HOH HOH . E 5 HOH A 131 295 295 HOH HOH . E 5 HOH A 132 296 296 HOH HOH . E 5 HOH A 133 297 297 HOH HOH . E 5 HOH A 134 298 298 HOH HOH . E 5 HOH A 135 299 299 HOH HOH . E 5 HOH A 136 300 300 HOH HOH . E 5 HOH A 137 301 301 HOH HOH . E 5 HOH A 138 302 302 HOH HOH . E 5 HOH A 139 303 303 HOH HOH . E 5 HOH A 140 304 304 HOH HOH . E 5 HOH A 141 305 305 HOH HOH . E 5 HOH A 142 306 306 HOH HOH . E 5 HOH A 143 307 307 HOH HOH . E 5 HOH A 144 308 308 HOH HOH . E 5 HOH A 145 309 309 HOH HOH . E 5 HOH A 146 310 310 HOH HOH . E 5 HOH A 147 311 311 HOH HOH . E 5 HOH A 148 312 312 HOH HOH . E 5 HOH A 149 313 313 HOH HOH . E 5 HOH A 150 314 314 HOH HOH . E 5 HOH A 151 315 315 HOH HOH . E 5 HOH A 152 316 316 HOH HOH . E 5 HOH A 153 317 317 HOH HOH . E 5 HOH A 154 318 318 HOH HOH . E 5 HOH A 155 319 319 HOH HOH . E 5 HOH A 156 320 320 HOH HOH . E 5 HOH A 157 321 321 HOH HOH . E 5 HOH A 158 322 322 HOH HOH . E 5 HOH A 159 323 323 HOH HOH . E 5 HOH A 160 324 324 HOH HOH . E 5 HOH A 161 325 325 HOH HOH . E 5 HOH A 162 326 326 HOH HOH . E 5 HOH A 163 327 327 HOH HOH . E 5 HOH A 164 328 328 HOH HOH . E 5 HOH A 165 329 329 HOH HOH . E 5 HOH A 166 330 330 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -11.304 -7.232 -10.008 1 35.73 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 4 -10.181 -7.189 -9.135 1 32.57 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 4 -11.994 -5.862 -10.048 1 40.07 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 4 -12.457 -5.52 -8.713 1 43.52 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 4 -11.032 -4.779 -10.539 1 42.26 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 4 -11.682 -3.504 -10.549 1 46.25 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . D 4 -12.014 -8 -9.667 1 35.73 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . D 4 -10.981 -7.519 -11.02 1 35.73 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . . . D 4 -10.18 -8.002 -8.552 1 32.57 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . . . D 4 -12.843 -5.918 -10.745 1 40.07 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . . . D 4 -12.441 -4.527 -8.598 1 43.52 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . . . D 4 -10.677 -5.025 -11.55 1 42.26 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . . . D 4 -10.147 -4.742 -9.887 1 42.26 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . . . D 4 -11.042 -2.806 -10.87 1 46.25 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #