data_3M0B
#
_model_server_result.job_id            2g40zFvL7Ll6A3kFCiM6pw 
_model_server_result.datetime_utc      '2025-07-27 10:53:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m0b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":200}' 
#
_entry.id    3M0B 
#
_exptl.entry_id    3M0B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.744 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "[3,3'-(7,12-diethyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)dipropanoato(2-)]ruthenium" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3M0B 
_cell.length_a            61.183 
_cell.length_b            61.183 
_cell.length_c            245.116 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M0B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 B RU RUR . A RUR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc2 B RU RUR . A RUR 200 1_555 C C CMO . A CMO 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? 
#
_chem_comp.formula           'C34 H36 N4 O4 Ru' 
_chem_comp.formula_weight    665.744 
_chem_comp.id                RUR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "[3,3'-(7,12-diethyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)dipropanoato(2-)]ruthenium" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'MESOPORPHYRIN IX CONTAINING RU' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A RUR doub 265 n n 
CHA C4D RUR sing 266 n n 
CHA HHA RUR sing 267 n n 
CHB C4A RUR doub 268 n n 
CHB C1B RUR sing 269 n n 
CHB HHB RUR sing 270 n n 
CHC C4B RUR doub 271 n n 
CHC C1C RUR sing 272 n n 
CHC HHC RUR sing 273 n n 
CHD C4C RUR sing 274 n n 
CHD C1D RUR doub 275 n n 
CHD HHD RUR sing 276 n n 
C1A C2A RUR sing 277 n y 
C1A NA RUR sing 278 n y 
C2A C3A RUR doub 279 n y 
C2A CAA RUR sing 280 n n 
C3A C4A RUR sing 281 n y 
C3A CMA RUR sing 282 n n 
C4A NA RUR sing 283 n y 
CMA HMA RUR sing 284 n n 
CMA HMAA RUR sing 285 n n 
CMA HMAB RUR sing 286 n n 
CAA CBA RUR sing 287 n n 
CAA HAA RUR sing 288 n n 
CAA HAAA RUR sing 289 n n 
CBA CGA RUR sing 290 n n 
CBA HBA RUR sing 291 n n 
CBA HBAA RUR sing 292 n n 
CGA O1A RUR doub 293 n n 
CGA O2A RUR sing 294 n n 
O2A H31 RUR sing 295 n n 
C1B C2B RUR sing 296 n n 
C1B NB RUR doub 297 n n 
C2B C3B RUR doub 298 n n 
C2B CMB RUR sing 299 n n 
C3B C4B RUR sing 300 n n 
C3B CAB RUR sing 301 n n 
C4B NB RUR sing 302 n n 
CMB HMB RUR sing 303 n n 
CMB HMBA RUR sing 304 n n 
CMB HMBB RUR sing 305 n n 
CAB CBB RUR sing 306 n n 
CAB HAB RUR sing 307 n n 
CBB HBB RUR sing 308 n n 
CBB HBBA RUR sing 309 n n 
C1C C2C RUR doub 310 n n 
C1C NC RUR sing 311 n n 
C2C C3C RUR sing 312 n y 
C2C CMC RUR sing 313 n y 
C3C C4C RUR doub 314 n y 
C3C CAC RUR sing 315 n n 
C4C NC RUR sing 316 n y 
CMC HMC RUR sing 317 n n 
CMC HMCA RUR sing 318 n y 
CMC HMCB RUR sing 319 n n 
CAC CBC RUR sing 320 n n 
CAC HAC RUR sing 321 n n 
CBC HBC RUR sing 322 n n 
CBC HBCA RUR sing 323 n n 
C1D C2D RUR sing 324 n n 
C1D ND RUR sing 325 n n 
C2D C3D RUR doub 326 n n 
C2D CMD RUR sing 327 n n 
C3D C4D RUR sing 328 n n 
C3D CAD RUR sing 329 n n 
C4D ND RUR doub 330 n n 
CMD HMD RUR sing 331 n n 
CMD HMDA RUR sing 332 n n 
CMD HMDB RUR sing 333 n n 
CAD CBD RUR sing 334 n n 
CAD HAD RUR sing 335 n n 
CAD HADA RUR sing 336 n n 
CBD CGD RUR sing 337 n n 
CBD HBD RUR sing 338 n n 
CBD HBDA RUR sing 339 n n 
CGD O1D RUR doub 340 n n 
CGD O2D RUR sing 341 n n 
O2D H32 RUR sing 342 n n 
RU ND RUR sing 343 n n 
RU NC RUR sing 344 n n 
NA RU RUR sing 345 n n 
NB RU RUR sing 346 n n 
CAB H33 RUR sing 347 n n 
CBB H34 RUR sing 348 n n 
CAC H35 RUR sing 349 n n 
CBC H36 RUR sing 350 n n 
#
_atom_sites.entry_id                     3M0B 
_atom_sites.fract_transf_matrix[1][1]    0.016344 
_atom_sites.fract_transf_matrix[1][2]    0.009436 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00408 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RUR A 1 200 200 RUR RUR . 
C 3 CMO A 1 500 500 CMO CMO . 
D 4 HOH A 1 201 201 HOH HOH . 
D 4 HOH A 2 202 202 HOH HOH . 
D 4 HOH A 3 203 203 HOH HOH . 
D 4 HOH A 4 204 204 HOH HOH . 
D 4 HOH A 5 205 205 HOH HOH . 
D 4 HOH A 6 206 206 HOH HOH . 
D 4 HOH A 7 207 207 HOH HOH . 
D 4 HOH A 8 208 208 HOH HOH . 
D 4 HOH A 9 209 209 HOH HOH . 
D 4 HOH A 10 210 210 HOH HOH . 
D 4 HOH A 11 211 211 HOH HOH . 
D 4 HOH A 12 212 212 HOH HOH . 
D 4 HOH A 13 213 213 HOH HOH . 
D 4 HOH A 14 214 214 HOH HOH . 
D 4 HOH A 15 215 215 HOH HOH . 
D 4 HOH A 16 216 216 HOH HOH . 
D 4 HOH A 17 217 217 HOH HOH . 
D 4 HOH A 18 218 218 HOH HOH . 
D 4 HOH A 19 219 219 HOH HOH . 
D 4 HOH A 20 220 220 HOH HOH . 
D 4 HOH A 21 221 221 HOH HOH . 
D 4 HOH A 22 222 222 HOH HOH . 
D 4 HOH A 23 223 223 HOH HOH . 
D 4 HOH A 24 224 224 HOH HOH . 
D 4 HOH A 25 225 225 HOH HOH . 
D 4 HOH A 26 226 226 HOH HOH . 
D 4 HOH A 27 227 227 HOH HOH . 
D 4 HOH A 28 228 228 HOH HOH . 
D 4 HOH A 29 229 229 HOH HOH . 
D 4 HOH A 30 230 230 HOH HOH . 
D 4 HOH A 31 231 231 HOH HOH . 
D 4 HOH A 32 232 232 HOH HOH . 
D 4 HOH A 33 233 233 HOH HOH . 
D 4 HOH A 34 234 234 HOH HOH . 
D 4 HOH A 35 235 235 HOH HOH . 
D 4 HOH A 36 236 236 HOH HOH . 
D 4 HOH A 37 237 237 HOH HOH . 
D 4 HOH A 38 238 238 HOH HOH . 
D 4 HOH A 39 239 239 HOH HOH . 
D 4 HOH A 40 240 240 HOH HOH . 
D 4 HOH A 41 241 241 HOH HOH . 
D 4 HOH A 42 242 242 HOH HOH . 
D 4 HOH A 43 243 243 HOH HOH . 
D 4 HOH A 44 244 244 HOH HOH . 
D 4 HOH A 45 245 245 HOH HOH . 
D 4 HOH A 46 246 246 HOH HOH . 
D 4 HOH A 47 247 247 HOH HOH . 
D 4 HOH A 48 248 248 HOH HOH . 
D 4 HOH A 49 249 249 HOH HOH . 
D 4 HOH A 50 250 250 HOH HOH . 
D 4 HOH A 51 251 251 HOH HOH . 
D 4 HOH A 52 252 252 HOH HOH . 
D 4 HOH A 53 253 253 HOH HOH . 
D 4 HOH A 54 254 254 HOH HOH . 
D 4 HOH A 55 255 255 HOH HOH . 
D 4 HOH A 56 256 256 HOH HOH . 
D 4 HOH A 57 257 257 HOH HOH . 
D 4 HOH A 58 258 258 HOH HOH . 
D 4 HOH A 59 259 259 HOH HOH . 
D 4 HOH A 60 260 260 HOH HOH . 
D 4 HOH A 61 261 261 HOH HOH . 
D 4 HOH A 62 262 262 HOH HOH . 
D 4 HOH A 63 263 263 HOH HOH . 
D 4 HOH A 64 264 264 HOH HOH . 
D 4 HOH A 65 265 265 HOH HOH . 
D 4 HOH A 66 266 266 HOH HOH . 
D 4 HOH A 67 267 267 HOH HOH . 
D 4 HOH A 68 268 268 HOH HOH . 
D 4 HOH A 69 269 269 HOH HOH . 
D 4 HOH A 70 270 270 HOH HOH . 
D 4 HOH A 71 271 271 HOH HOH . 
D 4 HOH A 72 272 272 HOH HOH . 
D 4 HOH A 73 273 273 HOH HOH . 
D 4 HOH A 74 274 274 HOH HOH . 
D 4 HOH A 75 275 275 HOH HOH . 
D 4 HOH A 76 276 276 HOH HOH . 
D 4 HOH A 77 277 277 HOH HOH . 
D 4 HOH A 78 278 278 HOH HOH . 
D 4 HOH A 79 279 279 HOH HOH . 
D 4 HOH A 80 280 280 HOH HOH . 
D 4 HOH A 81 281 281 HOH HOH . 
D 4 HOH A 82 282 282 HOH HOH . 
D 4 HOH A 83 283 283 HOH HOH . 
D 4 HOH A 84 284 284 HOH HOH . 
D 4 HOH A 85 285 285 HOH HOH . 
D 4 HOH A 86 286 286 HOH HOH . 
D 4 HOH A 87 287 287 HOH HOH . 
D 4 HOH A 88 288 288 HOH HOH . 
D 4 HOH A 89 289 289 HOH HOH . 
D 4 HOH A 90 290 290 HOH HOH . 
D 4 HOH A 91 291 291 HOH HOH . 
D 4 HOH A 92 292 292 HOH HOH . 
D 4 HOH A 93 293 293 HOH HOH . 
D 4 HOH A 94 294 294 HOH HOH . 
D 4 HOH A 95 295 295 HOH HOH . 
D 4 HOH A 96 296 296 HOH HOH . 
D 4 HOH A 97 297 297 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA RUR . . . B 2 -0.986 -20.201 -5.68 1 28.95 ? CHA RUR 200 A 1 
HETATM 2 C CHB RUR . . . B 2 -2.889 -24.527 -6.451 1 28.52 ? CHB RUR 200 A 1 
HETATM 3 C CHC RUR . . . B 2 -0.546 -26.227 -2.585 1 29.43 ? CHC RUR 200 A 1 
HETATM 4 C CHD RUR . . . B 2 0.816 -21.746 -1.39 1 32.7 ? CHD RUR 200 A 1 
HETATM 5 C C1A RUR . . . B 2 -1.51 -21.264 -6.392 1 30.25 ? C1A RUR 200 A 1 
HETATM 6 C C2A RUR . . . B 2 -1.756 -21.37 -7.807 1 29.82 ? C2A RUR 200 A 1 
HETATM 7 C C3A RUR . . . B 2 -2.272 -22.581 -8.015 1 30.56 ? C3A RUR 200 A 1 
HETATM 8 C C4A RUR . . . B 2 -2.405 -23.269 -6.752 1 26.66 ? C4A RUR 200 A 1 
HETATM 9 C CMA RUR . . . B 2 -2.677 -23.175 -9.348 1 28.19 ? CMA RUR 200 A 1 
HETATM 10 C CAA RUR . . . B 2 -1.402 -20.3 -8.853 1 28.89 ? CAA RUR 200 A 1 
HETATM 11 C CBA RUR . . . B 2 -2.259 -19.048 -8.834 1 30.21 ? CBA RUR 200 A 1 
HETATM 12 C CGA RUR . . . B 2 -3.476 -19.238 -9.668 1 30.78 ? CGA RUR 200 A 1 
HETATM 13 O O1A RUR . . . B 2 -3.48 -20.028 -10.564 1 29.7 ? O1A RUR 200 A 1 
HETATM 14 O O2A RUR . . . B 2 -4.468 -18.609 -9.446 1 29.6 ? O2A RUR 200 A 1 
HETATM 15 C C1B RUR . . . B 2 -2.445 -25.453 -5.521 1 32.78 ? C1B RUR 200 A 1 
HETATM 16 C C2B RUR . . . B 2 -2.648 -26.868 -5.429 1 33.11 ? C2B RUR 200 A 1 
HETATM 17 C C3B RUR . . . B 2 -1.993 -27.311 -4.355 1 30.9 ? C3B RUR 200 A 1 
HETATM 18 C C4B RUR . . . B 2 -1.336 -26.225 -3.718 1 33.26 ? C4B RUR 200 A 1 
HETATM 19 C CMB RUR . . . B 2 -3.51 -27.666 -6.392 1 30.17 ? CMB RUR 200 A 1 
HETATM 20 C CAB RUR . . . B 2 -1.903 -28.723 -3.816 1 33.88 ? CAB RUR 200 A 1 
HETATM 21 C CBB RUR . . . B 2 -1.811 -29.733 -4.643 1 38.65 ? CBB RUR 200 A 1 
HETATM 22 C C1C RUR . . . B 2 0.047 -25.241 -1.83 1 34.21 ? C1C RUR 200 A 1 
HETATM 23 C C2C RUR . . . B 2 0.782 -25.288 -0.602 1 34.18 ? C2C RUR 200 A 1 
HETATM 24 C C3C RUR . . . B 2 1.153 -24.046 -0.285 1 31.02 ? C3C RUR 200 A 1 
HETATM 25 C C4C RUR . . . B 2 0.684 -23.126 -1.273 1 35.86 ? C4C RUR 200 A 1 
HETATM 26 C CMC RUR . . . B 2 1.069 -26.553 0.194 1 30.82 ? CMC RUR 200 A 1 
HETATM 27 C CAC RUR . . . B 2 1.943 -23.598 0.928 1 38.37 ? CAC RUR 200 A 1 
HETATM 28 C CBC RUR . . . B 2 3.241 -23.757 0.971 1 39.07 ? CBC RUR 200 A 1 
HETATM 29 C C1D RUR . . . B 2 0.559 -20.837 -2.415 1 37.08 ? C1D RUR 200 A 1 
HETATM 30 C C2D RUR . . . B 2 0.935 -19.454 -2.551 1 33.63 ? C2D RUR 200 A 1 
HETATM 31 C C3D RUR . . . B 2 0.374 -18.954 -3.888 1 34.98 ? C3D RUR 200 A 1 
HETATM 32 C C4D RUR . . . B 2 -0.305 -20.086 -4.473 1 37.31 ? C4D RUR 200 A 1 
HETATM 33 C CMD RUR . . . B 2 1.748 -18.664 -1.545 1 35.91 ? CMD RUR 200 A 1 
HETATM 34 C CAD RUR . . . B 2 0.531 -17.564 -4.51 1 36.49 ? CAD RUR 200 A 1 
HETATM 35 C CBD RUR . . . B 2 -0.368 -16.52 -3.926 1 41.4 ? CBD RUR 200 A 1 
HETATM 36 C CGD RUR . . . B 2 0.028 -15.19 -4.482 1 45.15 ? CGD RUR 200 A 1 
HETATM 37 O O1D RUR . . . B 2 1.209 -14.952 -4.701 1 42.72 ? O1D RUR 200 A 1 
HETATM 38 O O2D RUR . . . B 2 -0.846 -14.377 -4.709 1 43.63 ? O2D RUR 200 A 1 
HETATM 39 RU RU RUR . . . B 2 -0.804 -23.152 -4.027 1 31.24 ? RU RUR 200 A 1 
HETATM 40 N NA RUR . . . B 2 -1.953 -22.401 -5.848 1 28.41 ? NA RUR 200 A 1 
HETATM 41 N NB RUR . . . B 2 -1.662 -25.192 -4.481 1 30.65 ? NB RUR 200 A 1 
HETATM 42 N NC RUR . . . B 2 0.063 -23.942 -2.097 1 28.86 ? NC RUR 200 A 1 
HETATM 43 N ND RUR . . . B 2 -0.144 -21.051 -3.543 1 31.9 ? ND RUR 200 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#