data_3M11 # _model_server_result.job_id qFMW9ksZxx9F8aMB7-RIcA _model_server_result.datetime_utc '2024-12-27 00:08:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3M11 # _exptl.entry_id 3M11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 525.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-{2-[(5,6-diphenylfuro[2,3-d]pyrimidin-4-yl)amino]ethyl}phenyl)-3-phenylurea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M11 _cell.length_a 82.266 _cell.length_b 82.266 _cell.length_c 170.283 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H27 N5 O2' _chem_comp.formula_weight 525.6 _chem_comp.id AKI _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-{2-[(5,6-diphenylfuro[2,3-d]pyrimidin-4-yl)amino]ethyl}phenyl)-3-phenylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 AKI doub 1 n y N1 C6 AKI sing 2 n y C2 N3 AKI sing 3 n y N3 C4 AKI doub 4 n y C4 C5 AKI sing 5 n y C4 NBN AKI sing 6 n n C5 C6 AKI doub 7 n y C5 CAG AKI sing 8 n y C6 OAI AKI sing 9 n y CAA CAB AKI doub 10 n y CAA CAF AKI sing 11 n y CAB CAC AKI sing 12 n y CAC CAD AKI doub 13 n y CAC CAG AKI sing 14 n y CAD CAE AKI sing 15 n y CAE CAF AKI doub 16 n y CAG CAH AKI doub 17 n y CAH OAI AKI sing 18 n y CAH CAL AKI sing 19 n y CAL CAM AKI doub 20 n y CAL CAQ AKI sing 21 n y CAM CAN AKI sing 22 n y CAN CAO AKI doub 23 n y CAO CAP AKI sing 24 n y CAP CAQ AKI doub 25 n y CAV CAW AKI sing 26 n n CAV NBN AKI sing 27 n n CAW CAX AKI sing 28 n n CAX CAY AKI doub 29 n y CAX CBC AKI sing 30 n y CAY CAZ AKI sing 31 n y CAZ CBA AKI doub 32 n y CBA CBB AKI sing 33 n y CBA NBD AKI sing 34 n n CBB CBC AKI doub 35 n y NBD CBE AKI sing 36 n n CBE NBF AKI sing 37 n n CBE OBM AKI doub 38 n n NBF CBG AKI sing 39 n n CBG CBH AKI doub 40 n y CBG CBL AKI sing 41 n y CBH CBI AKI sing 42 n y CBI CBJ AKI doub 43 n y CBJ CBK AKI sing 44 n y CBK CBL AKI doub 45 n y C2 H2 AKI sing 46 n n CAA HAA AKI sing 47 n n CAB HAB AKI sing 48 n n CAD HAD AKI sing 49 n n CAE HAE AKI sing 50 n n CAF HAF AKI sing 51 n n CAM HAM AKI sing 52 n n CAN HAN AKI sing 53 n n CAO HAO AKI sing 54 n n CAP HAP AKI sing 55 n n CAQ HAQ AKI sing 56 n n CAV HAV AKI sing 57 n n CAV HAVA AKI sing 58 n n CAW HAW AKI sing 59 n n CAW HAWA AKI sing 60 n n CAY HAY AKI sing 61 n n CAZ HAZ AKI sing 62 n n CBB HBB AKI sing 63 n n CBC HBC AKI sing 64 n n NBD HNBD AKI sing 65 n n NBF HNBF AKI sing 66 n n CBH HBH AKI sing 67 n n CBI HBI AKI sing 68 n n CBJ HBJ AKI sing 69 n n CBK HBK AKI sing 70 n n CBL HBL AKI sing 71 n n NBN HNBN AKI sing 72 n n # _atom_sites.entry_id 3M11 _atom_sites.fract_transf_matrix[1][1] 0.012156 _atom_sites.fract_transf_matrix[1][2] 0.007018 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKI A 1 1 1 AKI DRG . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 15 15 HOH HOH . C 3 HOH A 14 17 17 HOH HOH . C 3 HOH A 15 18 18 HOH HOH . C 3 HOH A 16 19 19 HOH HOH . C 3 HOH A 17 20 20 HOH HOH . C 3 HOH A 18 21 21 HOH HOH . C 3 HOH A 19 22 22 HOH HOH . C 3 HOH A 20 23 23 HOH HOH . C 3 HOH A 21 24 24 HOH HOH . C 3 HOH A 22 25 25 HOH HOH . C 3 HOH A 23 26 26 HOH HOH . C 3 HOH A 24 27 27 HOH HOH . C 3 HOH A 25 28 28 HOH HOH . C 3 HOH A 26 29 29 HOH HOH . C 3 HOH A 27 30 30 HOH HOH . C 3 HOH A 28 31 31 HOH HOH . C 3 HOH A 29 32 32 HOH HOH . C 3 HOH A 30 33 33 HOH HOH . C 3 HOH A 31 34 34 HOH HOH . C 3 HOH A 32 36 36 HOH HOH . C 3 HOH A 33 37 37 HOH HOH . C 3 HOH A 34 38 38 HOH HOH . C 3 HOH A 35 39 39 HOH HOH . C 3 HOH A 36 40 40 HOH HOH . C 3 HOH A 37 41 41 HOH HOH . C 3 HOH A 38 42 42 HOH HOH . C 3 HOH A 39 44 44 HOH HOH . C 3 HOH A 40 45 45 HOH HOH . C 3 HOH A 41 46 46 HOH HOH . C 3 HOH A 42 47 47 HOH HOH . C 3 HOH A 43 48 48 HOH HOH . C 3 HOH A 44 50 50 HOH HOH . C 3 HOH A 45 51 51 HOH HOH . C 3 HOH A 46 52 52 HOH HOH . C 3 HOH A 47 53 53 HOH HOH . C 3 HOH A 48 54 54 HOH HOH . C 3 HOH A 49 55 55 HOH HOH . C 3 HOH A 50 56 56 HOH HOH . C 3 HOH A 51 57 57 HOH HOH . C 3 HOH A 52 58 58 HOH HOH . C 3 HOH A 53 59 59 HOH HOH . C 3 HOH A 54 60 60 HOH HOH . C 3 HOH A 55 61 61 HOH HOH . C 3 HOH A 56 63 63 HOH HOH . C 3 HOH A 57 64 64 HOH HOH . C 3 HOH A 58 65 65 HOH HOH . C 3 HOH A 59 66 66 HOH HOH . C 3 HOH A 60 67 67 HOH HOH . C 3 HOH A 61 68 68 HOH HOH . C 3 HOH A 62 69 69 HOH HOH . C 3 HOH A 63 70 70 HOH HOH . C 3 HOH A 64 71 71 HOH HOH . C 3 HOH A 65 72 72 HOH HOH . C 3 HOH A 66 73 73 HOH HOH . C 3 HOH A 67 74 74 HOH HOH . C 3 HOH A 68 75 75 HOH HOH . C 3 HOH A 69 76 76 HOH HOH . C 3 HOH A 70 77 77 HOH HOH . C 3 HOH A 71 78 78 HOH HOH . C 3 HOH A 72 79 79 HOH HOH . C 3 HOH A 73 80 80 HOH HOH . C 3 HOH A 74 81 81 HOH HOH . C 3 HOH A 75 82 82 HOH HOH . C 3 HOH A 76 83 83 HOH HOH . C 3 HOH A 77 84 84 HOH HOH . C 3 HOH A 78 85 85 HOH HOH . C 3 HOH A 79 86 86 HOH HOH . C 3 HOH A 80 88 88 HOH HOH . C 3 HOH A 81 89 89 HOH HOH . C 3 HOH A 82 93 93 HOH HOH . C 3 HOH A 83 94 94 HOH HOH . C 3 HOH A 84 95 95 HOH HOH . C 3 HOH A 85 96 96 HOH HOH . C 3 HOH A 86 98 98 HOH HOH . C 3 HOH A 87 99 99 HOH HOH . C 3 HOH A 88 100 100 HOH HOH . C 3 HOH A 89 102 102 HOH HOH . C 3 HOH A 90 105 105 HOH HOH . C 3 HOH A 91 106 106 HOH HOH . C 3 HOH A 92 107 107 HOH HOH . C 3 HOH A 93 108 108 HOH HOH . C 3 HOH A 94 109 109 HOH HOH . C 3 HOH A 95 111 111 HOH HOH . C 3 HOH A 96 115 115 HOH HOH . C 3 HOH A 97 117 117 HOH HOH . C 3 HOH A 98 118 118 HOH HOH . C 3 HOH A 99 119 119 HOH HOH . C 3 HOH A 100 402 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AKI . . . B 2 3.861 31.356 9.025 1 50.81 ? N1 AKI 1 A 1 HETATM 2 C C2 AKI . . . B 2 4.636 30.424 9.557 1 50.39 ? C2 AKI 1 A 1 HETATM 3 N N3 AKI . . . B 2 5.355 29.601 8.81 1 51.12 ? N3 AKI 1 A 1 HETATM 4 C C4 AKI . . . B 2 5.322 29.685 7.473 1 51.03 ? C4 AKI 1 A 1 HETATM 5 C C5 AKI . . . B 2 4.52 30.65 6.883 1 51.11 ? C5 AKI 1 A 1 HETATM 6 C C6 AKI . . . B 2 3.778 31.499 7.695 1 51.7 ? C6 AKI 1 A 1 HETATM 7 C CAA AKI . . . B 2 6.014 30.594 2.37 1 49.28 ? CAA AKI 1 A 1 HETATM 8 C CAB AKI . . . B 2 5.479 31.188 3.508 1 50.62 ? CAB AKI 1 A 1 HETATM 9 C CAC AKI . . . B 2 4.788 30.416 4.435 1 50.85 ? CAC AKI 1 A 1 HETATM 10 C CAD AKI . . . B 2 4.633 29.051 4.225 1 50.53 ? CAD AKI 1 A 1 HETATM 11 C CAE AKI . . . B 2 5.168 28.457 3.087 1 48.75 ? CAE AKI 1 A 1 HETATM 12 C CAF AKI . . . B 2 5.859 29.229 2.16 1 48.39 ? CAF AKI 1 A 1 HETATM 13 C CAG AKI . . . B 2 4.253 31.009 5.572 1 51.06 ? CAG AKI 1 A 1 HETATM 14 C CAH AKI . . . B 2 3.358 32.064 5.596 1 50.47 ? CAH AKI 1 A 1 HETATM 15 O OAI AKI . . . B 2 3.066 32.365 6.897 1 51.79 ? OAI AKI 1 A 1 HETATM 16 C CAL AKI . . . B 2 2.841 32.711 4.48 1 50.37 ? CAL AKI 1 A 1 HETATM 17 C CAM AKI . . . B 2 3.03 32.171 3.214 1 48.95 ? CAM AKI 1 A 1 HETATM 18 C CAN AKI . . . B 2 2.513 32.819 2.098 1 47.24 ? CAN AKI 1 A 1 HETATM 19 C CAO AKI . . . B 2 1.807 34.006 2.249 1 46.94 ? CAO AKI 1 A 1 HETATM 20 C CAP AKI . . . B 2 1.617 34.546 3.515 1 44.98 ? CAP AKI 1 A 1 HETATM 21 C CAQ AKI . . . B 2 2.134 33.899 4.631 1 48.36 ? CAQ AKI 1 A 1 HETATM 22 C CAV AKI . . . B 2 6.875 27.825 7.363 1 53.1 ? CAV AKI 1 A 1 HETATM 23 C CAW AKI . . . B 2 8.26 28.399 7.667 1 57.01 ? CAW AKI 1 A 1 HETATM 24 C CAX AKI . . . B 2 9.177 27.331 8.268 1 59.68 ? CAX AKI 1 A 1 HETATM 25 C CAY AKI . . . B 2 8.895 26.797 9.52 1 61.91 ? CAY AKI 1 A 1 HETATM 26 C CAZ AKI . . . B 2 9.728 25.827 10.065 1 63.98 ? CAZ AKI 1 A 1 HETATM 27 C CBA AKI . . . B 2 10.842 25.391 9.359 1 64.22 ? CBA AKI 1 A 1 HETATM 28 C CBB AKI . . . B 2 11.124 25.924 8.107 1 63.53 ? CBB AKI 1 A 1 HETATM 29 C CBC AKI . . . B 2 10.292 26.894 7.561 1 61.4 ? CBC AKI 1 A 1 HETATM 30 N NBD AKI . . . B 2 11.639 24.462 9.881 1 67.56 ? NBD AKI 1 A 1 HETATM 31 C CBE AKI . . . B 2 11.755 23.276 9.291 1 69.52 ? CBE AKI 1 A 1 HETATM 32 N NBF AKI . . . B 2 12.57 22.399 9.87 1 72.6 ? NBF AKI 1 A 1 HETATM 33 C CBG AKI . . . B 2 12.735 21.192 9.337 1 74.91 ? CBG AKI 1 A 1 HETATM 34 C CBH AKI . . . B 2 13.948 20.528 9.484 1 75.89 ? CBH AKI 1 A 1 HETATM 35 C CBI AKI . . . B 2 14.121 19.266 8.927 1 75.73 ? CBI AKI 1 A 1 HETATM 36 C CBJ AKI . . . B 2 13.082 18.669 8.222 1 75.71 ? CBJ AKI 1 A 1 HETATM 37 C CBK AKI . . . B 2 11.87 19.333 8.075 1 76.87 ? CBK AKI 1 A 1 HETATM 38 C CBL AKI . . . B 2 11.697 20.594 8.633 1 76.42 ? CBL AKI 1 A 1 HETATM 39 O OBM AKI . . . B 2 11.14 23.004 8.261 1 69.5 ? OBM AKI 1 A 1 HETATM 40 N NBN AKI . . . B 2 6.045 28.857 6.725 1 52.09 ? NBN AKI 1 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #