data_3M2K # _model_server_result.job_id yAuoZmwOLeV0wYo94cjaPg _model_server_result.datetime_utc '2024-12-19 22:53:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3M2K # _exptl.entry_id 3M2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CEFOTAXIME,C3' cleaved,open,bound form" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.22 _cell.angle_gamma 90 _cell.entry_id 3M2K _cell.length_a 43.538 _cell.length_b 91.524 _cell.length_c 66.302 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C8 CEF . A CEF 1 1_555 A OG SER 40 A SER 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale2 D C8 CEF . B CEF 1 1_555 B OG SER 40 B SER 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C14 H15 N5 O5 S2' _chem_comp.formula_weight 397.429 _chem_comp.id CEF _chem_comp.mon_nstd_flag . _chem_comp.name "CEFOTAXIME, C3' cleaved, open, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 CEF sing 70 n n S1 C6 CEF sing 71 n n C1 C2 CEF sing 72 n n C1 H1 CEF sing 73 n n C1 H2 CEF sing 74 n n C2 C3 CEF doub 75 n n C2 C4 CEF sing 76 n n C3 H3 CEF sing 77 n n C3 H4 CEF sing 78 n n C4 C5 CEF sing 79 n n C4 N1 CEF doub 80 n n C5 O1 CEF doub 81 n n C5 O2 CEF sing 82 n n O2 H5 CEF sing 83 n n N1 C6 CEF sing 84 n n C6 C7 CEF sing 85 n n C6 H6 CEF sing 86 n n C7 C8 CEF sing 87 n n C7 N2 CEF sing 88 n n C7 H7 CEF sing 89 n n C8 O3 CEF doub 90 n n C8 H8 CEF sing 91 n n N2 C9 CEF sing 92 n n N2 H9 CEF sing 93 n n C9 O4 CEF doub 94 n n C9 C10 CEF sing 95 n n C10 N3 CEF doub 96 z n C10 C12 CEF sing 97 n n N3 O5 CEF sing 98 n n O5 C11 CEF sing 99 n n C11 H10 CEF sing 100 n n C11 H11 CEF sing 101 n n C11 H12 CEF sing 102 n n C12 C13 CEF doub 103 n y C12 N5 CEF sing 104 n y C13 S2 CEF sing 105 n y C13 H13 CEF sing 106 n n S2 C14 CEF sing 107 n y C14 N4 CEF sing 108 n n C14 N5 CEF doub 109 n y N4 H14 CEF sing 110 n n N4 H15 CEF sing 111 n n # _atom_sites.entry_id 3M2K _atom_sites.fract_transf_matrix[1][1] 0.022968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CEF A 1 1 1 CEF PCZ . D 2 CEF B 1 1 1 CEF PCZ . E 3 HOH A 1 4 4 HOH HOH . E 3 HOH A 2 8 8 HOH HOH . E 3 HOH A 3 9 9 HOH HOH . E 3 HOH A 4 10 10 HOH HOH . E 3 HOH A 5 11 11 HOH HOH . E 3 HOH A 6 12 12 HOH HOH . E 3 HOH A 7 13 13 HOH HOH . E 3 HOH A 8 16 16 HOH HOH . E 3 HOH A 9 21 21 HOH HOH . E 3 HOH A 10 25 25 HOH HOH . E 3 HOH A 11 29 29 HOH HOH . E 3 HOH A 12 292 292 HOH HOH . E 3 HOH A 13 293 293 HOH HOH . E 3 HOH A 14 294 294 HOH HOH . E 3 HOH A 15 295 295 HOH HOH . E 3 HOH A 16 296 296 HOH HOH . E 3 HOH A 17 297 297 HOH HOH . E 3 HOH A 18 298 298 HOH HOH . E 3 HOH A 19 299 299 HOH HOH . E 3 HOH A 20 302 302 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 3 3 HOH HOH . F 3 HOH B 3 5 5 HOH HOH . F 3 HOH B 4 6 6 HOH HOH . F 3 HOH B 5 15 15 HOH HOH . F 3 HOH B 6 17 17 HOH HOH . F 3 HOH B 7 18 18 HOH HOH . F 3 HOH B 8 19 19 HOH HOH . F 3 HOH B 9 22 22 HOH HOH . F 3 HOH B 10 23 23 HOH HOH . F 3 HOH B 11 24 24 HOH HOH . F 3 HOH B 12 26 26 HOH HOH . F 3 HOH B 13 27 27 HOH HOH . F 3 HOH B 14 28 28 HOH HOH . F 3 HOH B 15 292 292 HOH HOH . F 3 HOH B 16 293 293 HOH HOH . F 3 HOH B 17 294 294 HOH HOH . F 3 HOH B 18 295 295 HOH HOH . F 3 HOH B 19 296 296 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CEF . . . C 2 -12.457 -35.46 -19.932 1 14.18 ? S1 CEF 1 A 1 HETATM 2 C C1 CEF . . . C 2 -13.948 -34.673 -20.019 1 18.47 ? C1 CEF 1 A 1 HETATM 3 C C2 CEF . . . C 2 -14.141 -33.348 -20.271 1 15.5 ? C2 CEF 1 A 1 HETATM 4 C C3 CEF . . . C 2 -15.329 -32.838 -20.776 1 12.3 ? C3 CEF 1 A 1 HETATM 5 C C4 CEF . . . C 2 -13.095 -32.585 -19.867 1 14.25 ? C4 CEF 1 A 1 HETATM 6 C C5 CEF . . . C 2 -13.195 -31.18 -19.95 1 15.71 ? C5 CEF 1 A 1 HETATM 7 O O1 CEF . . . C 2 -14.157 -30.546 -20.494 1 18.05 ? O1 CEF 1 A 1 HETATM 8 O O2 CEF . . . C 2 -12.292 -30.453 -19.431 1 16.44 ? O2 CEF 1 A 1 HETATM 9 N N1 CEF . . . C 2 -11.973 -33.089 -19.281 1 14.1 ? N1 CEF 1 A 1 HETATM 10 C C6 CEF . . . C 2 -11.355 -34.418 -19.164 1 13.38 ? C6 CEF 1 A 1 HETATM 11 C C7 CEF . . . C 2 -11.146 -34.775 -17.691 1 13.43 ? C7 CEF 1 A 1 HETATM 12 C C8 CEF . . . C 2 -11.221 -33.364 -17.226 1 13.93 ? C8 CEF 1 A 1 HETATM 13 O O3 CEF . . . C 2 -11.732 -33.09 -16.189 1 16.45 ? O3 CEF 1 A 1 HETATM 14 N N2 CEF . . . C 2 -12.158 -35.535 -16.967 1 16.35 ? N2 CEF 1 A 1 HETATM 15 C C9 CEF . . . C 2 -12.355 -36.852 -16.973 1 14.56 ? C9 CEF 1 A 1 HETATM 16 O O4 CEF . . . C 2 -11.802 -37.605 -17.683 1 11.91 ? O4 CEF 1 A 1 HETATM 17 C C10 CEF . . . C 2 -13.431 -37.347 -16.163 1 17.05 ? C10 CEF 1 A 1 HETATM 18 N N3 CEF . . . C 2 -13.429 -37.551 -14.911 1 14.25 ? N3 CEF 1 A 1 HETATM 19 O O5 CEF . . . C 2 -12.295 -37.394 -14.299 1 17.12 ? O5 CEF 1 A 1 HETATM 20 C C11 CEF . . . C 2 -12.345 -37.568 -12.851 1 23.33 ? C11 CEF 1 A 1 HETATM 21 C C12 CEF . . . C 2 -14.761 -37.556 -16.697 1 28.51 ? C12 CEF 1 A 1 HETATM 22 C C13 CEF . . . C 2 -15.07 -37.301 -18.098 1 32.73 ? C13 CEF 1 A 1 HETATM 23 S S2 CEF . . . C 2 -16.859 -37.157 -17.991 1 45.58 ? S2 CEF 1 A 1 HETATM 24 C C14 CEF . . . C 2 -17.027 -37.883 -16.335 1 36.64 ? C14 CEF 1 A 1 HETATM 25 N N4 CEF . . . C 2 -18.156 -38.302 -15.639 1 28.34 ? N4 CEF 1 A 1 HETATM 26 N N5 CEF . . . C 2 -15.781 -37.972 -15.807 1 35.63 ? N5 CEF 1 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 655 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #