data_3M3F # _model_server_result.job_id UmSa32YBsBBKovyR7hD7Nw _model_server_result.datetime_utc '2025-03-11 05:13:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 3M3F # _exptl.entry_id 3M3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2,6-difluoro-4-({2-[(phenylsulfonyl)amino]ethyl}sulfanyl)phenoxy]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M3F _cell.length_a 46.947 _cell.length_b 52.257 _cell.length_c 115.984 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc1 A NE2 HIS 20 A HIS 23 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc2 A OE1 GLU 39 A GLU 42 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A NE2 HIS 43 A HIS 46 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C16 H16 F2 N2 O4 S2' _chem_comp.formula_weight 402.436 _chem_comp.id P99 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2,6-difluoro-4-({2-[(phenylsulfonyl)amino]ethyl}sulfanyl)phenoxy]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-[4-[2-(benzenesulfonamido)ethylsulfanyl]-2,6-difluorophenoxy]acetamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 N01 P99 sing 237 n n N01 HN01 P99 sing 238 n n N01 HN0A P99 sing 239 n n O03 C02 P99 doub 240 n n C02 C04 P99 sing 241 n n O05 C04 P99 sing 242 n n C04 H04 P99 sing 243 n n C04 H04A P99 sing 244 n n O05 C06 P99 sing 245 n n C07 C06 P99 doub 246 n y C06 C25 P99 sing 247 n y F08 C07 P99 sing 248 n n C07 C09 P99 sing 249 n y C09 C10 P99 doub 250 n y C09 H09 P99 sing 251 n n C10 S11 P99 sing 252 n n C10 C24 P99 sing 253 n y S11 C12 P99 sing 254 n n C12 C13 P99 sing 255 n n C12 H12 P99 sing 256 n n C12 H12A P99 sing 257 n n N14 C13 P99 sing 258 n n C13 H13 P99 sing 259 n n C13 H13A P99 sing 260 n n N14 S15 P99 sing 261 n n N14 HN14 P99 sing 262 n n O16 S15 P99 doub 263 n n S15 O17 P99 doub 264 n n S15 C18 P99 sing 265 n n C23 C18 P99 doub 266 n y C18 C19 P99 sing 267 n y C19 C20 P99 doub 268 n y C19 H19 P99 sing 269 n n C21 C20 P99 sing 270 n y C20 H20 P99 sing 271 n n C22 C21 P99 doub 272 n y C21 H21 P99 sing 273 n n C23 C22 P99 sing 274 n y C22 H22 P99 sing 275 n n C23 H23 P99 sing 276 n n C25 C24 P99 doub 277 n y C24 H24 P99 sing 278 n n C25 F26 P99 sing 279 n n # _atom_sites.entry_id 3M3F _atom_sites.fract_transf_matrix[1][1] 0.021301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLU A 1 400 400 GLU GLU . C 3 P99 A 1 800 800 P99 P99 . D 4 ZN A 1 401 401 ZN ZN . E 4 ZN A 1 402 402 ZN ZN . F 5 HOH A 1 500 500 HOH HOH . F 5 HOH A 2 501 501 HOH HOH . F 5 HOH A 3 502 502 HOH HOH . F 5 HOH A 4 503 503 HOH HOH . F 5 HOH A 5 504 504 HOH HOH . F 5 HOH A 6 505 505 HOH HOH . F 5 HOH A 7 506 506 HOH HOH . F 5 HOH A 8 507 507 HOH HOH . F 5 HOH A 9 508 508 HOH HOH . F 5 HOH A 10 509 509 HOH HOH . F 5 HOH A 11 510 510 HOH HOH . F 5 HOH A 12 511 511 HOH HOH . F 5 HOH A 13 512 512 HOH HOH . F 5 HOH A 14 513 513 HOH HOH . F 5 HOH A 15 514 514 HOH HOH . F 5 HOH A 16 515 515 HOH HOH . F 5 HOH A 17 516 516 HOH HOH . F 5 HOH A 18 517 517 HOH HOH . F 5 HOH A 19 518 518 HOH HOH . F 5 HOH A 20 519 519 HOH HOH . F 5 HOH A 21 520 520 HOH HOH . F 5 HOH A 22 521 521 HOH HOH . F 5 HOH A 23 522 522 HOH HOH . F 5 HOH A 24 523 523 HOH HOH . F 5 HOH A 25 524 524 HOH HOH . F 5 HOH A 26 525 525 HOH HOH . F 5 HOH A 27 526 526 HOH HOH . F 5 HOH A 28 527 527 HOH HOH . F 5 HOH A 29 528 528 HOH HOH . F 5 HOH A 30 529 529 HOH HOH . F 5 HOH A 31 530 530 HOH HOH . F 5 HOH A 32 531 531 HOH HOH . F 5 HOH A 33 532 532 HOH HOH . F 5 HOH A 34 533 533 HOH HOH . F 5 HOH A 35 534 534 HOH HOH . F 5 HOH A 36 535 535 HOH HOH . F 5 HOH A 37 536 536 HOH HOH . F 5 HOH A 38 537 537 HOH HOH . F 5 HOH A 39 538 538 HOH HOH . F 5 HOH A 40 539 539 HOH HOH . F 5 HOH A 41 540 540 HOH HOH . F 5 HOH A 42 541 541 HOH HOH . F 5 HOH A 43 542 542 HOH HOH . F 5 HOH A 44 543 543 HOH HOH . F 5 HOH A 45 544 544 HOH HOH . F 5 HOH A 46 545 545 HOH HOH . F 5 HOH A 47 546 546 HOH HOH . F 5 HOH A 48 547 547 HOH HOH . F 5 HOH A 49 548 548 HOH HOH . F 5 HOH A 50 549 549 HOH HOH . F 5 HOH A 51 550 550 HOH HOH . F 5 HOH A 52 551 551 HOH HOH . F 5 HOH A 53 552 552 HOH HOH . F 5 HOH A 54 553 553 HOH HOH . F 5 HOH A 55 554 554 HOH HOH . F 5 HOH A 56 555 555 HOH HOH . F 5 HOH A 57 556 556 HOH HOH . F 5 HOH A 58 557 557 HOH HOH . F 5 HOH A 59 558 558 HOH HOH . F 5 HOH A 60 559 559 HOH HOH . F 5 HOH A 61 560 560 HOH HOH . F 5 HOH A 62 561 561 HOH HOH . F 5 HOH A 63 562 562 HOH HOH . F 5 HOH A 64 563 563 HOH HOH . F 5 HOH A 65 564 564 HOH HOH . F 5 HOH A 66 565 565 HOH HOH . F 5 HOH A 67 566 566 HOH HOH . F 5 HOH A 68 567 567 HOH HOH . F 5 HOH A 69 568 568 HOH HOH . F 5 HOH A 70 569 569 HOH HOH . F 5 HOH A 71 570 570 HOH HOH . F 5 HOH A 72 571 571 HOH HOH . F 5 HOH A 73 572 572 HOH HOH . F 5 HOH A 74 573 573 HOH HOH . F 5 HOH A 75 574 574 HOH HOH . F 5 HOH A 76 575 575 HOH HOH . F 5 HOH A 77 576 576 HOH HOH . F 5 HOH A 78 577 577 HOH HOH . F 5 HOH A 79 578 578 HOH HOH . F 5 HOH A 80 579 579 HOH HOH . F 5 HOH A 81 580 580 HOH HOH . F 5 HOH A 82 581 581 HOH HOH . F 5 HOH A 83 582 582 HOH HOH . F 5 HOH A 84 583 583 HOH HOH . F 5 HOH A 85 584 584 HOH HOH . F 5 HOH A 86 585 585 HOH HOH . F 5 HOH A 87 586 586 HOH HOH . F 5 HOH A 88 587 587 HOH HOH . F 5 HOH A 89 588 588 HOH HOH . F 5 HOH A 90 589 589 HOH HOH . F 5 HOH A 91 590 590 HOH HOH . F 5 HOH A 92 591 591 HOH HOH . F 5 HOH A 93 592 592 HOH HOH . F 5 HOH A 94 593 593 HOH HOH . F 5 HOH A 95 594 594 HOH HOH . F 5 HOH A 96 595 595 HOH HOH . F 5 HOH A 97 596 596 HOH HOH . F 5 HOH A 98 597 597 HOH HOH . F 5 HOH A 99 598 598 HOH HOH . F 5 HOH A 100 599 599 HOH HOH . F 5 HOH A 101 600 600 HOH HOH . F 5 HOH A 102 601 601 HOH HOH . F 5 HOH A 103 602 602 HOH HOH . F 5 HOH A 104 603 603 HOH HOH . F 5 HOH A 105 604 604 HOH HOH . F 5 HOH A 106 605 605 HOH HOH . F 5 HOH A 107 606 606 HOH HOH . F 5 HOH A 108 607 607 HOH HOH . F 5 HOH A 109 608 608 HOH HOH . F 5 HOH A 110 609 609 HOH HOH . F 5 HOH A 111 610 610 HOH HOH . F 5 HOH A 112 611 611 HOH HOH . F 5 HOH A 113 612 612 HOH HOH . F 5 HOH A 114 613 613 HOH HOH . F 5 HOH A 115 614 614 HOH HOH . F 5 HOH A 116 615 615 HOH HOH . F 5 HOH A 117 616 616 HOH HOH . F 5 HOH A 118 617 617 HOH HOH . F 5 HOH A 119 618 618 HOH HOH . F 5 HOH A 120 619 619 HOH HOH . F 5 HOH A 121 620 620 HOH HOH . F 5 HOH A 122 621 621 HOH HOH . F 5 HOH A 123 622 622 HOH HOH . F 5 HOH A 124 623 623 HOH HOH . F 5 HOH A 125 624 624 HOH HOH . F 5 HOH A 126 625 625 HOH HOH . F 5 HOH A 127 626 626 HOH HOH . F 5 HOH A 128 627 627 HOH HOH . F 5 HOH A 129 628 628 HOH HOH . F 5 HOH A 130 629 629 HOH HOH . F 5 HOH A 131 630 630 HOH HOH . F 5 HOH A 132 631 631 HOH HOH . F 5 HOH A 133 632 632 HOH HOH . F 5 HOH A 134 633 633 HOH HOH . F 5 HOH A 135 634 634 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 P99 . A . C 3 0.744 19.654 -1.31 0.5 25.83 ? N01 P99 800 A 1 HETATM 2 N N01 P99 . B . C 3 0.58 32.822 1.206 0.5 25.77 ? N01 P99 800 A 1 HETATM 3 C C02 P99 . A . C 3 0.846 21.048 -1.736 0.5 25.27 ? C02 P99 800 A 1 HETATM 4 C C02 P99 . B . C 3 0.838 31.488 1.769 0.5 26.18 ? C02 P99 800 A 1 HETATM 5 O O03 P99 . A . C 3 0.996 21.291 -2.889 0.5 27.02 ? O03 P99 800 A 1 HETATM 6 O O03 P99 . B . C 3 1.372 31.369 2.829 0.5 25.85 ? O03 P99 800 A 1 HETATM 7 C C04 P99 . A . C 3 0.725 22.186 -0.705 0.5 24.89 ? C04 P99 800 A 1 HETATM 8 C C04 P99 . B . C 3 0.34 30.233 1.031 0.5 25.36 ? C04 P99 800 A 1 HETATM 9 O O05 P99 . A . C 3 1.692 23.178 -0.95 0.5 25.04 ? O05 P99 800 A 1 HETATM 10 O O05 P99 . B . C 3 1.41 29.369 0.785 0.5 25.07 ? O05 P99 800 A 1 HETATM 11 C C06 P99 . A . C 3 1.528 24.517 -0.548 0.5 23.54 ? C06 P99 800 A 1 HETATM 12 C C06 P99 . B . C 3 1.279 27.986 0.585 0.5 23.88 ? C06 P99 800 A 1 HETATM 13 C C07 P99 . A . C 3 1.479 25.608 -1.631 0.5 24.47 ? C07 P99 800 A 1 HETATM 14 C C07 P99 . B . C 3 1.309 26.998 1.773 0.5 23.31 ? C07 P99 800 A 1 HETATM 15 F F08 P99 . A . C 3 1.641 25.265 -2.941 0.5 27.82 ? F08 P99 800 A 1 HETATM 16 F F08 P99 . B . C 3 1.426 27.496 3.044 0.5 28.29 ? F08 P99 800 A 1 HETATM 17 C C09 P99 . A . C 3 1.25 27.077 -1.237 0.5 22.6 ? C09 P99 800 A 1 HETATM 18 C C09 P99 . B . C 3 1.197 25.469 1.522 0.5 22.66 ? C09 P99 800 A 1 HETATM 19 C C10 P99 . A . C 3 1.089 27.437 0.256 0.5 24.14 ? C10 P99 800 A 1 HETATM 20 C C10 P99 . B . C 3 1.064 24.963 0.058 0.5 23.14 ? C10 P99 800 A 1 HETATM 21 S S11 P99 . A . C 3 0.798 29.145 0.759 0.5 25.35 ? S11 P99 800 A 1 HETATM 22 S S11 P99 . B . C 3 0.875 23.207 -0.357 0.5 27.97 ? S11 P99 800 A 1 HETATM 23 C C12 P99 . A . C 3 0.937 29.202 2.571 0.5 20.78 ? C12 P99 800 A 1 HETATM 24 C C12 P99 . B . C 3 0.875 23.11 -2.176 0.5 24.56 ? C12 P99 800 A 1 HETATM 25 C C13 P99 . A . C 3 2.337 29.71 2.968 0.5 20.05 ? C13 P99 800 A 1 HETATM 26 C C13 P99 . B . C 3 2.297 22.756 -2.658 0.5 25.65 ? C13 P99 800 A 1 HETATM 27 N N14 P99 . A . C 3 3.367 29.019 2.182 0.5 17.43 ? N14 P99 800 A 1 HETATM 28 N N14 P99 . B . C 3 3.302 23.456 -1.853 0.5 24.54 ? N14 P99 800 A 1 HETATM 29 S S15 P99 . A . C 3 4.363 28.103 3.242 0.5 14.62 ? S15 P99 800 A 1 HETATM 30 S S15 P99 . B . C 3 4.417 24.261 -2.887 0.5 27.83 ? S15 P99 800 A 1 HETATM 31 O O16 P99 . A . C 3 5.618 27.396 2.442 0.5 19.73 ? O16 P99 800 A 1 HETATM 32 O O16 P99 . B . C 3 5.816 24.608 -2.088 0.5 24.45 ? O16 P99 800 A 1 HETATM 33 O O17 P99 . A . C 3 3.418 26.973 3.982 0.5 18.11 ? O17 P99 800 A 1 HETATM 34 O O17 P99 . B . C 3 3.716 25.649 -3.453 0.5 26.71 ? O17 P99 800 A 1 HETATM 35 C C18 P99 . A . C 3 4.977 29.179 4.542 0.5 14.72 ? C18 P99 800 A 1 HETATM 36 C C18 P99 . B . C 3 4.759 23.183 -4.299 0.5 23.41 ? C18 P99 800 A 1 HETATM 37 C C19 P99 . A . C 3 4.609 28.874 5.99 0.5 15.7 ? C19 P99 800 A 1 HETATM 38 C C19 P99 . B . C 3 4.357 23.633 -5.714 0.5 21.38 ? C19 P99 800 A 1 HETATM 39 C C20 P99 . A . C 3 5.079 29.837 7.074 0.5 15.49 ? C20 P99 800 A 1 HETATM 40 C C20 P99 . B . C 3 4.618 22.687 -6.902 0.5 23.06 ? C20 P99 800 A 1 HETATM 41 C C21 P99 . A . C 3 5.923 31.072 6.697 0.5 18.82 ? C21 P99 800 A 1 HETATM 42 C C21 P99 . B . C 3 5.268 21.313 -6.654 0.5 23.53 ? C21 P99 800 A 1 HETATM 43 C C22 P99 . A . C 3 6.285 31.366 5.24 0.5 15.83 ? C22 P99 800 A 1 HETATM 44 C C22 P99 . B . C 3 5.659 20.878 -5.231 0.5 23.7 ? C22 P99 800 A 1 HETATM 45 C C23 P99 . A . C 3 5.805 30.408 4.152 0.5 14.43 ? C23 P99 800 A 1 HETATM 46 C C23 P99 . B . C 3 5.406 21.811 -4.04 0.5 23.9 ? C23 P99 800 A 1 HETATM 47 C C24 P99 . A . C 3 1.151 26.368 1.348 0.5 23.24 ? C24 P99 800 A 1 HETATM 48 C C24 P99 . B . C 3 1.058 25.947 -1.118 0.5 23.65 ? C24 P99 800 A 1 HETATM 49 C C25 P99 . A . C 3 1.38 24.907 0.95 0.5 21.93 ? C25 P99 800 A 1 HETATM 50 C C25 P99 . B . C 3 1.168 27.448 -0.861 0.5 22.68 ? C25 P99 800 A 1 HETATM 51 F F26 P99 . A . C 3 1.404 23.979 1.929 0.5 20.08 ? F26 P99 800 A 1 HETATM 52 F F26 P99 . B . C 3 1.144 28.321 -1.899 0.5 24.58 ? F26 P99 800 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #