data_3M3O # _model_server_result.job_id l3HAwEi-j4x8chadtdnYcQ _model_server_result.datetime_utc '2025-03-05 22:10:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":159}' # _entry.id 3M3O # _exptl.entry_id 3M3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.24 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M3O _cell.length_a 42.56 _cell.length_b 42.56 _cell.length_c 125.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 41.766667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 A2G _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B A2G 1 B 1 A2G C 241 A2G 2 n B GAL 2 B 2 GAL C 240 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C OH NPO . A NPO 242 1_555 B C1 A2G . B A2G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B O3 A2G . B A2G 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H19 N O5' _chem_comp.formula_weight 209.24 _chem_comp.id BTB _chem_comp.mon_nstd_flag . _chem_comp.name 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BIS-TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BTB sing 100 n n C1 C2 BTB sing 101 n n C1 H11 BTB sing 102 n n C1 H12 BTB sing 103 n n O1 HO1 BTB sing 104 n n C2 C3 BTB sing 105 n n C2 C4 BTB sing 106 n n C2 N BTB sing 107 n n C3 O3 BTB sing 108 n n C3 H31 BTB sing 109 n n C3 H32 BTB sing 110 n n O3 HO3 BTB sing 111 n n C4 O4 BTB sing 112 n n C4 H41 BTB sing 113 n n C4 H42 BTB sing 114 n n O4 HO4 BTB sing 115 n n N C5 BTB sing 116 n n N C7 BTB sing 117 n n C5 C6 BTB sing 118 n n C5 H51 BTB sing 119 n n C5 H52 BTB sing 120 n n C6 O6 BTB sing 121 n n C6 H61 BTB sing 122 n n C6 H62 BTB sing 123 n n O6 HO6 BTB sing 124 n n C7 C8 BTB sing 125 n n C7 H71 BTB sing 126 n n C7 H72 BTB sing 127 n n C8 O8 BTB sing 128 n n C8 H81 BTB sing 129 n n C8 H82 BTB sing 130 n n O8 HO8 BTB sing 131 n n # _atom_sites.entry_id 3M3O _atom_sites.fract_transf_matrix[1][1] 0.023496 _atom_sites.fract_transf_matrix[1][2] 0.013566 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NPO A 1 242 242 NPO NPO . D 4 BTB A 1 159 100 BTB BTB . E 5 HOH A 1 160 1 HOH HOH . E 5 HOH A 2 161 2 HOH HOH . E 5 HOH A 3 162 3 HOH HOH . E 5 HOH A 4 163 4 HOH HOH . E 5 HOH A 5 164 6 HOH HOH . E 5 HOH A 6 165 7 HOH HOH . E 5 HOH A 7 166 8 HOH HOH . E 5 HOH A 8 167 9 HOH HOH . E 5 HOH A 9 168 10 HOH HOH . E 5 HOH A 10 169 12 HOH HOH . E 5 HOH A 11 170 13 HOH HOH . E 5 HOH A 12 171 15 HOH HOH . E 5 HOH A 13 172 16 HOH HOH . E 5 HOH A 14 173 17 HOH HOH . E 5 HOH A 15 174 18 HOH HOH . E 5 HOH A 16 175 20 HOH HOH . E 5 HOH A 17 176 21 HOH HOH . E 5 HOH A 18 177 22 HOH HOH . E 5 HOH A 19 178 23 HOH HOH . E 5 HOH A 20 179 24 HOH HOH . E 5 HOH A 21 180 25 HOH HOH . E 5 HOH A 22 181 26 HOH HOH . E 5 HOH A 23 182 27 HOH HOH . E 5 HOH A 24 183 28 HOH HOH . E 5 HOH A 25 184 29 HOH HOH . E 5 HOH A 26 185 30 HOH HOH . E 5 HOH A 27 186 31 HOH HOH . E 5 HOH A 28 187 32 HOH HOH . E 5 HOH A 29 188 33 HOH HOH . E 5 HOH A 30 189 34 HOH HOH . E 5 HOH A 31 190 35 HOH HOH . E 5 HOH A 32 191 36 HOH HOH . E 5 HOH A 33 192 37 HOH HOH . E 5 HOH A 34 193 38 HOH HOH . E 5 HOH A 35 194 39 HOH HOH . E 5 HOH A 36 195 40 HOH HOH . E 5 HOH A 37 196 42 HOH HOH . E 5 HOH A 38 197 43 HOH HOH . E 5 HOH A 39 198 44 HOH HOH . E 5 HOH A 40 199 45 HOH HOH . E 5 HOH A 41 200 46 HOH HOH . E 5 HOH A 42 201 47 HOH HOH . E 5 HOH A 43 202 48 HOH HOH . E 5 HOH A 44 203 50 HOH HOH . E 5 HOH A 45 204 51 HOH HOH . E 5 HOH A 46 205 52 HOH HOH . E 5 HOH A 47 206 53 HOH HOH . E 5 HOH A 48 207 54 HOH HOH . E 5 HOH A 49 208 55 HOH HOH . E 5 HOH A 50 209 56 HOH HOH . E 5 HOH A 51 210 57 HOH HOH . E 5 HOH A 52 211 58 HOH HOH . E 5 HOH A 53 212 59 HOH HOH . E 5 HOH A 54 213 60 HOH HOH . E 5 HOH A 55 214 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BTB . . . D 4 5.246 -1.64 -1.917 1 59.18 ? C1 BTB 159 A 1 HETATM 2 O O1 BTB . . . D 4 5.702 -2.895 -2.427 1 61.29 ? O1 BTB 159 A 1 HETATM 3 C C2 BTB . . . D 4 4.61 -0.828 -3.048 1 58.08 ? C2 BTB 159 A 1 HETATM 4 C C3 BTB . . . D 4 3.403 -1.584 -3.609 1 57.26 ? C3 BTB 159 A 1 HETATM 5 O O3 BTB . . . D 4 3.82 -2.822 -4.191 1 51.6 ? O3 BTB 159 A 1 HETATM 6 C C4 BTB . . . D 4 5.649 -0.641 -4.157 1 58.5 ? C4 BTB 159 A 1 HETATM 7 O O4 BTB . . . D 4 5.081 0.105 -5.236 1 57.72 ? O4 BTB 159 A 1 HETATM 8 N N BTB . . . D 4 4.169 0.481 -2.541 1 58.01 ? N BTB 159 A 1 HETATM 9 C C5 BTB . . . D 4 5.321 1.378 -2.365 1 56.58 ? C5 BTB 159 A 1 HETATM 10 C C6 BTB . . . D 4 5.105 2.672 -3.153 1 55.92 ? C6 BTB 159 A 1 HETATM 11 O O6 BTB . . . D 4 3.963 3.374 -2.654 1 51.33 ? O6 BTB 159 A 1 HETATM 12 C C7 BTB . . . D 4 3.499 0.303 -1.243 1 57.28 ? C7 BTB 159 A 1 HETATM 13 C C8 BTB . . . D 4 2.93 1.637 -0.754 1 56.82 ? C8 BTB 159 A 1 HETATM 14 O O8 BTB . . . D 4 2.34 1.465 0.537 1 54.07 ? O8 BTB 159 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #