data_3M43 # _model_server_result.job_id tC0NuMzcR20MvD64mByv2w _model_server_result.datetime_utc '2024-10-17 13:21:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3}' # _entry.id 3M43 # _exptl.entry_id 3M43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M43 _cell.length_a 56.77 _cell.length_b 56.775 _cell.length_c 127.059 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3M43 _atom_sites.fract_transf_matrix[1][1] 0.017615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL I 1 1 1 GOL GOL . D 2 GOL I 1 2 2 GOL GOL . E 2 GOL I 1 3 3 GOL GOL . F 3 HOH A 1 229 229 HOH HOH . F 3 HOH A 2 230 3 HOH HOH . F 3 HOH A 3 231 5 HOH HOH . F 3 HOH A 4 232 6 HOH HOH . F 3 HOH A 5 233 233 HOH HOH . F 3 HOH A 6 234 234 HOH HOH . F 3 HOH A 7 235 235 HOH HOH . F 3 HOH A 8 236 9 HOH HOH . F 3 HOH A 9 237 237 HOH HOH . F 3 HOH A 10 238 10 HOH HOH . F 3 HOH A 11 239 239 HOH HOH . F 3 HOH A 12 240 13 HOH HOH . F 3 HOH A 13 241 16 HOH HOH . F 3 HOH A 14 242 18 HOH HOH . F 3 HOH A 15 243 243 HOH HOH . F 3 HOH A 16 244 19 HOH HOH . F 3 HOH A 17 245 20 HOH HOH . F 3 HOH A 18 246 21 HOH HOH . F 3 HOH A 19 247 25 HOH HOH . F 3 HOH A 20 248 248 HOH HOH . F 3 HOH A 21 249 28 HOH HOH . F 3 HOH A 22 250 250 HOH HOH . F 3 HOH A 23 251 30 HOH HOH . F 3 HOH A 24 252 32 HOH HOH . F 3 HOH A 25 253 253 HOH HOH . F 3 HOH A 26 254 33 HOH HOH . F 3 HOH A 27 255 35 HOH HOH . F 3 HOH A 28 256 36 HOH HOH . F 3 HOH A 29 257 39 HOH HOH . F 3 HOH A 30 258 40 HOH HOH . F 3 HOH A 31 259 44 HOH HOH . F 3 HOH A 32 260 45 HOH HOH . F 3 HOH A 33 261 46 HOH HOH . F 3 HOH A 34 262 50 HOH HOH . F 3 HOH A 35 263 51 HOH HOH . F 3 HOH A 36 264 53 HOH HOH . F 3 HOH A 37 265 55 HOH HOH . F 3 HOH A 38 266 57 HOH HOH . F 3 HOH A 39 267 58 HOH HOH . F 3 HOH A 40 268 59 HOH HOH . F 3 HOH A 41 269 63 HOH HOH . F 3 HOH A 42 270 65 HOH HOH . F 3 HOH A 43 271 66 HOH HOH . F 3 HOH A 44 272 68 HOH HOH . F 3 HOH A 45 273 71 HOH HOH . F 3 HOH A 46 274 72 HOH HOH . F 3 HOH A 47 275 74 HOH HOH . F 3 HOH A 48 276 75 HOH HOH . F 3 HOH A 49 277 77 HOH HOH . F 3 HOH A 50 278 80 HOH HOH . F 3 HOH A 51 279 81 HOH HOH . F 3 HOH A 52 280 84 HOH HOH . F 3 HOH A 53 281 89 HOH HOH . F 3 HOH A 54 282 90 HOH HOH . F 3 HOH A 55 283 93 HOH HOH . F 3 HOH A 56 284 97 HOH HOH . F 3 HOH A 57 285 99 HOH HOH . F 3 HOH A 58 286 100 HOH HOH . F 3 HOH A 59 287 101 HOH HOH . F 3 HOH A 60 288 102 HOH HOH . F 3 HOH A 61 289 103 HOH HOH . F 3 HOH A 62 290 105 HOH HOH . F 3 HOH A 63 291 106 HOH HOH . F 3 HOH A 64 292 107 HOH HOH . F 3 HOH A 65 293 108 HOH HOH . F 3 HOH A 66 294 110 HOH HOH . F 3 HOH A 67 295 116 HOH HOH . F 3 HOH A 68 296 117 HOH HOH . F 3 HOH A 69 297 118 HOH HOH . F 3 HOH A 70 298 119 HOH HOH . F 3 HOH A 71 299 122 HOH HOH . F 3 HOH A 72 300 123 HOH HOH . F 3 HOH A 73 301 127 HOH HOH . F 3 HOH A 74 302 302 HOH HOH . F 3 HOH A 75 303 303 HOH HOH . F 3 HOH A 76 304 304 HOH HOH . F 3 HOH A 77 305 305 HOH HOH . F 3 HOH A 78 306 128 HOH HOH . F 3 HOH A 79 307 132 HOH HOH . F 3 HOH A 80 308 133 HOH HOH . F 3 HOH A 81 309 135 HOH HOH . F 3 HOH A 82 310 136 HOH HOH . F 3 HOH A 83 311 311 HOH HOH . F 3 HOH A 84 312 138 HOH HOH . F 3 HOH A 85 313 145 HOH HOH . F 3 HOH A 86 314 146 HOH HOH . F 3 HOH A 87 315 151 HOH HOH . F 3 HOH A 88 316 155 HOH HOH . F 3 HOH A 89 317 157 HOH HOH . F 3 HOH A 90 318 158 HOH HOH . F 3 HOH A 91 319 162 HOH HOH . F 3 HOH A 92 320 163 HOH HOH . F 3 HOH A 93 321 165 HOH HOH . F 3 HOH A 94 322 166 HOH HOH . F 3 HOH A 95 323 167 HOH HOH . F 3 HOH A 96 324 168 HOH HOH . F 3 HOH A 97 325 170 HOH HOH . F 3 HOH A 98 326 171 HOH HOH . F 3 HOH A 99 327 172 HOH HOH . F 3 HOH A 100 328 173 HOH HOH . F 3 HOH A 101 329 174 HOH HOH . F 3 HOH A 102 330 179 HOH HOH . F 3 HOH A 103 331 180 HOH HOH . F 3 HOH A 104 332 182 HOH HOH . F 3 HOH A 105 333 183 HOH HOH . F 3 HOH A 106 334 191 HOH HOH . F 3 HOH A 107 335 192 HOH HOH . F 3 HOH A 108 336 200 HOH HOH . F 3 HOH A 109 337 202 HOH HOH . F 3 HOH A 110 338 203 HOH HOH . F 3 HOH A 111 339 205 HOH HOH . F 3 HOH A 112 340 208 HOH HOH . F 3 HOH A 113 341 209 HOH HOH . F 3 HOH A 114 342 211 HOH HOH . F 3 HOH A 115 343 213 HOH HOH . F 3 HOH A 116 344 214 HOH HOH . F 3 HOH A 117 345 217 HOH HOH . F 3 HOH A 118 346 219 HOH HOH . F 3 HOH A 119 347 220 HOH HOH . F 3 HOH A 120 348 222 HOH HOH . F 3 HOH A 121 349 223 HOH HOH . F 3 HOH A 122 350 226 HOH HOH . F 3 HOH A 123 351 227 HOH HOH . G 3 HOH B 1 229 1 HOH HOH . G 3 HOH B 2 230 230 HOH HOH . G 3 HOH B 3 231 231 HOH HOH . G 3 HOH B 4 232 232 HOH HOH . G 3 HOH B 5 233 2 HOH HOH . G 3 HOH B 6 234 4 HOH HOH . G 3 HOH B 7 235 7 HOH HOH . G 3 HOH B 8 236 236 HOH HOH . G 3 HOH B 9 237 8 HOH HOH . G 3 HOH B 10 238 238 HOH HOH . G 3 HOH B 11 239 11 HOH HOH . G 3 HOH B 12 240 240 HOH HOH . G 3 HOH B 13 241 241 HOH HOH . G 3 HOH B 14 242 242 HOH HOH . G 3 HOH B 15 243 12 HOH HOH . G 3 HOH B 16 244 244 HOH HOH . G 3 HOH B 17 245 245 HOH HOH . G 3 HOH B 18 246 246 HOH HOH . G 3 HOH B 19 247 247 HOH HOH . G 3 HOH B 20 248 14 HOH HOH . G 3 HOH B 21 249 249 HOH HOH . G 3 HOH B 22 250 15 HOH HOH . G 3 HOH B 23 251 17 HOH HOH . G 3 HOH B 24 252 22 HOH HOH . G 3 HOH B 25 253 23 HOH HOH . G 3 HOH B 26 254 254 HOH HOH . G 3 HOH B 27 255 24 HOH HOH . G 3 HOH B 28 256 26 HOH HOH . G 3 HOH B 29 257 27 HOH HOH . G 3 HOH B 30 258 29 HOH HOH . G 3 HOH B 31 259 31 HOH HOH . G 3 HOH B 32 260 34 HOH HOH . G 3 HOH B 33 261 37 HOH HOH . G 3 HOH B 34 262 38 HOH HOH . G 3 HOH B 35 263 41 HOH HOH . G 3 HOH B 36 264 42 HOH HOH . G 3 HOH B 37 265 43 HOH HOH . G 3 HOH B 38 266 47 HOH HOH . G 3 HOH B 39 267 48 HOH HOH . G 3 HOH B 40 268 49 HOH HOH . G 3 HOH B 41 269 52 HOH HOH . G 3 HOH B 42 270 54 HOH HOH . G 3 HOH B 43 271 56 HOH HOH . G 3 HOH B 44 272 60 HOH HOH . G 3 HOH B 45 273 61 HOH HOH . G 3 HOH B 46 274 62 HOH HOH . G 3 HOH B 47 275 64 HOH HOH . G 3 HOH B 48 276 67 HOH HOH . G 3 HOH B 49 277 69 HOH HOH . G 3 HOH B 50 278 70 HOH HOH . G 3 HOH B 51 279 73 HOH HOH . G 3 HOH B 52 280 76 HOH HOH . G 3 HOH B 53 281 78 HOH HOH . G 3 HOH B 54 282 79 HOH HOH . G 3 HOH B 55 283 82 HOH HOH . G 3 HOH B 56 284 83 HOH HOH . G 3 HOH B 57 285 85 HOH HOH . G 3 HOH B 58 286 86 HOH HOH . G 3 HOH B 59 287 87 HOH HOH . G 3 HOH B 60 288 88 HOH HOH . G 3 HOH B 61 289 91 HOH HOH . G 3 HOH B 62 290 92 HOH HOH . G 3 HOH B 63 291 94 HOH HOH . G 3 HOH B 64 292 95 HOH HOH . G 3 HOH B 65 293 98 HOH HOH . G 3 HOH B 66 294 109 HOH HOH . G 3 HOH B 67 295 111 HOH HOH . G 3 HOH B 68 296 112 HOH HOH . G 3 HOH B 69 297 113 HOH HOH . G 3 HOH B 70 298 114 HOH HOH . G 3 HOH B 71 299 115 HOH HOH . G 3 HOH B 72 300 120 HOH HOH . G 3 HOH B 73 301 301 HOH HOH . G 3 HOH B 74 302 121 HOH HOH . G 3 HOH B 75 303 124 HOH HOH . G 3 HOH B 76 304 125 HOH HOH . G 3 HOH B 77 305 130 HOH HOH . G 3 HOH B 78 306 306 HOH HOH . G 3 HOH B 79 307 131 HOH HOH . G 3 HOH B 80 308 308 HOH HOH . G 3 HOH B 81 309 309 HOH HOH . G 3 HOH B 82 310 310 HOH HOH . G 3 HOH B 83 311 134 HOH HOH . G 3 HOH B 84 312 137 HOH HOH . G 3 HOH B 85 313 139 HOH HOH . G 3 HOH B 86 314 140 HOH HOH . G 3 HOH B 87 315 141 HOH HOH . G 3 HOH B 88 316 143 HOH HOH . G 3 HOH B 89 317 147 HOH HOH . G 3 HOH B 90 318 148 HOH HOH . G 3 HOH B 91 319 149 HOH HOH . G 3 HOH B 92 320 150 HOH HOH . G 3 HOH B 93 321 152 HOH HOH . G 3 HOH B 94 322 153 HOH HOH . G 3 HOH B 95 323 154 HOH HOH . G 3 HOH B 96 324 156 HOH HOH . G 3 HOH B 97 325 159 HOH HOH . G 3 HOH B 98 326 160 HOH HOH . G 3 HOH B 99 327 161 HOH HOH . G 3 HOH B 100 328 164 HOH HOH . G 3 HOH B 101 329 169 HOH HOH . G 3 HOH B 102 330 175 HOH HOH . G 3 HOH B 103 331 176 HOH HOH . G 3 HOH B 104 332 177 HOH HOH . G 3 HOH B 105 333 178 HOH HOH . G 3 HOH B 106 334 181 HOH HOH . G 3 HOH B 107 335 184 HOH HOH . G 3 HOH B 108 336 185 HOH HOH . G 3 HOH B 109 337 186 HOH HOH . G 3 HOH B 110 338 187 HOH HOH . G 3 HOH B 111 339 188 HOH HOH . G 3 HOH B 112 340 189 HOH HOH . G 3 HOH B 113 341 193 HOH HOH . G 3 HOH B 114 342 194 HOH HOH . G 3 HOH B 115 343 195 HOH HOH . G 3 HOH B 116 344 196 HOH HOH . G 3 HOH B 117 345 197 HOH HOH . G 3 HOH B 118 346 198 HOH HOH . G 3 HOH B 119 347 199 HOH HOH . G 3 HOH B 120 348 201 HOH HOH . G 3 HOH B 121 349 204 HOH HOH . G 3 HOH B 122 350 206 HOH HOH . G 3 HOH B 123 351 207 HOH HOH . G 3 HOH B 124 352 210 HOH HOH . G 3 HOH B 125 353 212 HOH HOH . G 3 HOH B 126 354 215 HOH HOH . G 3 HOH B 127 355 216 HOH HOH . G 3 HOH B 128 356 218 HOH HOH . G 3 HOH B 129 357 224 HOH HOH . H 3 HOH I 1 190 190 HOH HOH . H 3 HOH I 2 221 221 HOH HOH . H 3 HOH I 3 225 225 HOH HOH . H 3 HOH I 4 251 251 HOH HOH . H 3 HOH I 5 252 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -18.631 6.066 -22.376 1 40.41 ? C1 GOL 3 I 1 HETATM 2 O O1 GOL . . . E 2 -18.467 7.446 -22.146 1 33.7 ? O1 GOL 3 I 1 HETATM 3 C C2 GOL . . . E 2 -18.704 5.331 -21.043 1 35.33 ? C2 GOL 3 I 1 HETATM 4 O O2 GOL . . . E 2 -17.399 5.164 -20.539 1 49.39 ? O2 GOL 3 I 1 HETATM 5 C C3 GOL . . . E 2 -19.355 3.966 -21.247 1 36.09 ? C3 GOL 3 I 1 HETATM 6 O O3 GOL . . . E 2 -20.694 4.137 -21.648 1 37.64 ? O3 GOL 3 I 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #