data_3M44 # _model_server_result.job_id OedcH6-Ku2BseRTSAGXvzA _model_server_result.datetime_utc '2024-10-17 13:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":229}' # _entry.id 3M44 # _exptl.entry_id 3M44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M44 _cell.length_a 56.806 _cell.length_b 56.787 _cell.length_c 125.936 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3M44 _atom_sites.fract_transf_matrix[1][1] 0.017604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 229 1 GOL GOL . D 3 HOH A 1 229 2 HOH HOH . D 3 HOH A 2 230 4 HOH HOH . D 3 HOH A 3 231 5 HOH HOH . D 3 HOH A 4 232 232 HOH HOH . D 3 HOH A 5 233 6 HOH HOH . D 3 HOH A 6 234 7 HOH HOH . D 3 HOH A 7 235 235 HOH HOH . D 3 HOH A 8 236 236 HOH HOH . D 3 HOH A 9 237 12 HOH HOH . D 3 HOH A 10 238 238 HOH HOH . D 3 HOH A 11 239 239 HOH HOH . D 3 HOH A 12 240 240 HOH HOH . D 3 HOH A 13 241 241 HOH HOH . D 3 HOH A 14 242 242 HOH HOH . D 3 HOH A 15 243 243 HOH HOH . D 3 HOH A 16 244 244 HOH HOH . D 3 HOH A 17 245 245 HOH HOH . D 3 HOH A 18 246 246 HOH HOH . D 3 HOH A 19 247 13 HOH HOH . D 3 HOH A 20 248 16 HOH HOH . D 3 HOH A 21 249 17 HOH HOH . D 3 HOH A 22 250 18 HOH HOH . D 3 HOH A 23 251 21 HOH HOH . D 3 HOH A 24 252 22 HOH HOH . D 3 HOH A 25 253 24 HOH HOH . D 3 HOH A 26 254 29 HOH HOH . D 3 HOH A 27 255 30 HOH HOH . D 3 HOH A 28 256 31 HOH HOH . D 3 HOH A 29 257 32 HOH HOH . D 3 HOH A 30 258 33 HOH HOH . D 3 HOH A 31 259 42 HOH HOH . D 3 HOH A 32 260 43 HOH HOH . D 3 HOH A 33 261 45 HOH HOH . D 3 HOH A 34 262 47 HOH HOH . D 3 HOH A 35 263 48 HOH HOH . D 3 HOH A 36 264 49 HOH HOH . D 3 HOH A 37 265 51 HOH HOH . D 3 HOH A 38 266 52 HOH HOH . D 3 HOH A 39 267 53 HOH HOH . D 3 HOH A 40 268 56 HOH HOH . D 3 HOH A 41 269 57 HOH HOH . D 3 HOH A 42 270 58 HOH HOH . D 3 HOH A 43 271 59 HOH HOH . D 3 HOH A 44 272 61 HOH HOH . D 3 HOH A 45 273 62 HOH HOH . D 3 HOH A 46 274 65 HOH HOH . D 3 HOH A 47 275 68 HOH HOH . D 3 HOH A 48 276 69 HOH HOH . D 3 HOH A 49 277 72 HOH HOH . D 3 HOH A 50 278 76 HOH HOH . D 3 HOH A 51 279 78 HOH HOH . D 3 HOH A 52 280 81 HOH HOH . D 3 HOH A 53 281 82 HOH HOH . D 3 HOH A 54 282 84 HOH HOH . D 3 HOH A 55 283 85 HOH HOH . D 3 HOH A 56 284 89 HOH HOH . D 3 HOH A 57 285 91 HOH HOH . D 3 HOH A 58 286 94 HOH HOH . D 3 HOH A 59 287 95 HOH HOH . D 3 HOH A 60 288 96 HOH HOH . D 3 HOH A 61 289 98 HOH HOH . D 3 HOH A 62 290 101 HOH HOH . D 3 HOH A 63 291 102 HOH HOH . D 3 HOH A 64 292 103 HOH HOH . D 3 HOH A 65 293 104 HOH HOH . D 3 HOH A 66 294 106 HOH HOH . D 3 HOH A 67 295 108 HOH HOH . D 3 HOH A 68 296 112 HOH HOH . D 3 HOH A 69 297 113 HOH HOH . D 3 HOH A 70 298 114 HOH HOH . D 3 HOH A 71 299 115 HOH HOH . D 3 HOH A 72 300 116 HOH HOH . D 3 HOH A 73 301 301 HOH HOH . D 3 HOH A 74 302 119 HOH HOH . D 3 HOH A 75 303 303 HOH HOH . D 3 HOH A 76 304 123 HOH HOH . D 3 HOH A 77 305 125 HOH HOH . D 3 HOH A 78 306 127 HOH HOH . D 3 HOH A 79 307 131 HOH HOH . D 3 HOH A 80 308 132 HOH HOH . D 3 HOH A 81 309 133 HOH HOH . D 3 HOH A 82 310 134 HOH HOH . D 3 HOH A 83 311 140 HOH HOH . D 3 HOH A 84 312 142 HOH HOH . D 3 HOH A 85 313 143 HOH HOH . D 3 HOH A 86 314 144 HOH HOH . D 3 HOH A 87 315 148 HOH HOH . D 3 HOH A 88 316 150 HOH HOH . D 3 HOH A 89 317 151 HOH HOH . D 3 HOH A 90 318 156 HOH HOH . D 3 HOH A 91 319 157 HOH HOH . D 3 HOH A 92 320 159 HOH HOH . D 3 HOH A 93 321 160 HOH HOH . D 3 HOH A 94 322 167 HOH HOH . D 3 HOH A 95 323 169 HOH HOH . D 3 HOH A 96 324 170 HOH HOH . D 3 HOH A 97 325 173 HOH HOH . D 3 HOH A 98 326 174 HOH HOH . D 3 HOH A 99 327 175 HOH HOH . D 3 HOH A 100 328 176 HOH HOH . D 3 HOH A 101 329 177 HOH HOH . D 3 HOH A 102 330 178 HOH HOH . D 3 HOH A 103 331 180 HOH HOH . D 3 HOH A 104 332 181 HOH HOH . D 3 HOH A 105 333 182 HOH HOH . D 3 HOH A 106 334 183 HOH HOH . D 3 HOH A 107 335 185 HOH HOH . D 3 HOH A 108 336 187 HOH HOH . D 3 HOH A 109 337 193 HOH HOH . D 3 HOH A 110 338 194 HOH HOH . D 3 HOH A 111 339 196 HOH HOH . D 3 HOH A 112 340 197 HOH HOH . D 3 HOH A 113 341 201 HOH HOH . D 3 HOH A 114 342 202 HOH HOH . D 3 HOH A 115 343 205 HOH HOH . D 3 HOH A 116 344 207 HOH HOH . D 3 HOH A 117 345 209 HOH HOH . D 3 HOH A 118 346 212 HOH HOH . D 3 HOH A 119 347 215 HOH HOH . D 3 HOH A 120 348 219 HOH HOH . D 3 HOH A 121 349 220 HOH HOH . D 3 HOH A 122 350 221 HOH HOH . D 3 HOH A 123 351 222 HOH HOH . D 3 HOH A 124 352 225 HOH HOH . D 3 HOH A 125 353 226 HOH HOH . E 3 HOH B 1 230 230 HOH HOH . E 3 HOH B 2 231 231 HOH HOH . E 3 HOH B 3 232 1 HOH HOH . E 3 HOH B 4 233 233 HOH HOH . E 3 HOH B 5 234 234 HOH HOH . E 3 HOH B 6 235 3 HOH HOH . E 3 HOH B 7 236 8 HOH HOH . E 3 HOH B 8 237 237 HOH HOH . E 3 HOH B 9 238 9 HOH HOH . E 3 HOH B 10 239 10 HOH HOH . E 3 HOH B 11 240 11 HOH HOH . E 3 HOH B 12 241 14 HOH HOH . E 3 HOH B 13 242 15 HOH HOH . E 3 HOH B 14 243 19 HOH HOH . E 3 HOH B 15 244 20 HOH HOH . E 3 HOH B 16 245 23 HOH HOH . E 3 HOH B 17 246 25 HOH HOH . E 3 HOH B 18 247 26 HOH HOH . E 3 HOH B 19 248 27 HOH HOH . E 3 HOH B 20 249 28 HOH HOH . E 3 HOH B 21 250 34 HOH HOH . E 3 HOH B 22 251 35 HOH HOH . E 3 HOH B 23 252 36 HOH HOH . E 3 HOH B 24 253 37 HOH HOH . E 3 HOH B 25 254 38 HOH HOH . E 3 HOH B 26 255 39 HOH HOH . E 3 HOH B 27 256 40 HOH HOH . E 3 HOH B 28 257 41 HOH HOH . E 3 HOH B 29 258 44 HOH HOH . E 3 HOH B 30 259 46 HOH HOH . E 3 HOH B 31 260 50 HOH HOH . E 3 HOH B 32 261 54 HOH HOH . E 3 HOH B 33 262 55 HOH HOH . E 3 HOH B 34 263 60 HOH HOH . E 3 HOH B 35 264 67 HOH HOH . E 3 HOH B 36 265 70 HOH HOH . E 3 HOH B 37 266 71 HOH HOH . E 3 HOH B 38 267 73 HOH HOH . E 3 HOH B 39 268 74 HOH HOH . E 3 HOH B 40 269 75 HOH HOH . E 3 HOH B 41 270 79 HOH HOH . E 3 HOH B 42 271 80 HOH HOH . E 3 HOH B 43 272 83 HOH HOH . E 3 HOH B 44 273 86 HOH HOH . E 3 HOH B 45 274 87 HOH HOH . E 3 HOH B 46 275 88 HOH HOH . E 3 HOH B 47 276 90 HOH HOH . E 3 HOH B 48 277 92 HOH HOH . E 3 HOH B 49 278 93 HOH HOH . E 3 HOH B 50 279 97 HOH HOH . E 3 HOH B 51 280 99 HOH HOH . E 3 HOH B 52 281 100 HOH HOH . E 3 HOH B 53 282 105 HOH HOH . E 3 HOH B 54 283 107 HOH HOH . E 3 HOH B 55 284 109 HOH HOH . E 3 HOH B 56 285 110 HOH HOH . E 3 HOH B 57 286 117 HOH HOH . E 3 HOH B 58 287 118 HOH HOH . E 3 HOH B 59 288 121 HOH HOH . E 3 HOH B 60 289 122 HOH HOH . E 3 HOH B 61 290 124 HOH HOH . E 3 HOH B 62 291 126 HOH HOH . E 3 HOH B 63 292 128 HOH HOH . E 3 HOH B 64 293 129 HOH HOH . E 3 HOH B 65 294 130 HOH HOH . E 3 HOH B 66 295 135 HOH HOH . E 3 HOH B 67 296 136 HOH HOH . E 3 HOH B 68 297 137 HOH HOH . E 3 HOH B 69 298 138 HOH HOH . E 3 HOH B 70 299 139 HOH HOH . E 3 HOH B 71 300 141 HOH HOH . E 3 HOH B 72 301 145 HOH HOH . E 3 HOH B 73 302 146 HOH HOH . E 3 HOH B 74 303 147 HOH HOH . E 3 HOH B 75 304 304 HOH HOH . E 3 HOH B 76 305 149 HOH HOH . E 3 HOH B 77 306 152 HOH HOH . E 3 HOH B 78 307 153 HOH HOH . E 3 HOH B 79 308 154 HOH HOH . E 3 HOH B 80 309 155 HOH HOH . E 3 HOH B 81 310 158 HOH HOH . E 3 HOH B 82 311 161 HOH HOH . E 3 HOH B 83 312 163 HOH HOH . E 3 HOH B 84 313 164 HOH HOH . E 3 HOH B 85 314 165 HOH HOH . E 3 HOH B 86 315 166 HOH HOH . E 3 HOH B 87 316 168 HOH HOH . E 3 HOH B 88 317 171 HOH HOH . E 3 HOH B 89 318 172 HOH HOH . E 3 HOH B 90 319 179 HOH HOH . E 3 HOH B 91 320 184 HOH HOH . E 3 HOH B 92 321 188 HOH HOH . E 3 HOH B 93 322 189 HOH HOH . E 3 HOH B 94 323 190 HOH HOH . E 3 HOH B 95 324 191 HOH HOH . E 3 HOH B 96 325 192 HOH HOH . E 3 HOH B 97 326 195 HOH HOH . E 3 HOH B 98 327 198 HOH HOH . E 3 HOH B 99 328 199 HOH HOH . E 3 HOH B 100 329 200 HOH HOH . E 3 HOH B 101 330 204 HOH HOH . E 3 HOH B 102 331 206 HOH HOH . E 3 HOH B 103 332 208 HOH HOH . E 3 HOH B 104 333 210 HOH HOH . E 3 HOH B 105 334 211 HOH HOH . E 3 HOH B 106 335 213 HOH HOH . E 3 HOH B 107 336 214 HOH HOH . E 3 HOH B 108 337 216 HOH HOH . E 3 HOH B 109 338 217 HOH HOH . E 3 HOH B 110 339 218 HOH HOH . E 3 HOH B 111 340 223 HOH HOH . E 3 HOH B 112 341 224 HOH HOH . E 3 HOH B 113 342 227 HOH HOH . E 3 HOH B 114 343 228 HOH HOH . E 3 HOH B 115 344 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -11.598 9.295 -15.126 1 27.94 ? C1 GOL 229 B 1 HETATM 2 O O1 GOL . . . C 2 -10.561 9.834 -14.322 1 26.74 ? O1 GOL 229 B 1 HETATM 3 C C2 GOL . . . C 2 -11.005 8.45 -16.252 1 34.01 ? C2 GOL 229 B 1 HETATM 4 O O2 GOL . . . C 2 -10.059 7.55 -15.725 1 40.33 ? O2 GOL 229 B 1 HETATM 5 C C3 GOL . . . C 2 -10.286 9.325 -17.271 1 24.23 ? C3 GOL 229 B 1 HETATM 6 O O3 GOL . . . C 2 -11.16 10.034 -18.117 1 37.19 ? O3 GOL 229 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #