data_3M45 # _model_server_result.job_id 4Sho7xB2cwVQCxyVsxbEXw _model_server_result.datetime_utc '2025-03-06 01:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1395}' # _entry.id 3M45 # _exptl.entry_id 3M45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 75.91 _cell.angle_beta 77.02 _cell.angle_gamma 65.18 _cell.entry_id 3M45 _cell.length_a 42.847 _cell.length_b 50.528 _cell.length_c 79.851 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,K,L,O 1 1 B,C,G,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 53 1_555 A SG CYS 88 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? disulf ? disulf2 B SG CYS 28 B CYS 53 1_555 B SG CYS 88 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? disulf ? disulf3 C SG CYS 28 C CYS 53 1_555 C SG CYS 88 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf4 D SG CYS 28 D CYS 53 1_555 D SG CYS 88 D CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? covale ? covale1 A ND2 ASN 15 A ASN 40 1_555 E C1 NAG . A NAG 1395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 A ND2 ASN 35 A ASN 60 1_555 F C1 NAG . A NAG 2395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B ND2 ASN 15 B ASN 40 1_555 G C1 NAG . B NAG 1395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 B ND2 ASN 35 B ASN 60 1_555 H C1 NAG . B NAG 2395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale5 C ND2 ASN 15 C ASN 40 1_555 I C1 NAG . C NAG 1395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale6 C ND2 ASN 35 C ASN 60 1_555 J C1 NAG . C NAG 2395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 D ND2 ASN 15 D ASN 40 1_555 K C1 NAG . D NAG 1395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3M45 _atom_sites.fract_transf_matrix[1][1] 0.023339 _atom_sites.fract_transf_matrix[1][2] -0.010794 _atom_sites.fract_transf_matrix[1][3] -0.003611 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021805 _atom_sites.fract_transf_matrix[2][3] -0.003731 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG A 1 1395 1395 NAG NAG . F 2 NAG A 1 2395 2395 NAG NAG . G 2 NAG B 1 1395 1395 NAG NAG . H 2 NAG B 1 2395 2395 NAG NAG . I 2 NAG C 1 1395 1395 NAG NAG . J 2 NAG C 1 2395 2395 NAG NAG . K 2 NAG D 1 1395 1395 NAG NAG . L 3 HOH A 1 1 1 HOH HOH . L 3 HOH A 2 3 3 HOH HOH . L 3 HOH A 3 4 4 HOH HOH . L 3 HOH A 4 7 7 HOH HOH . L 3 HOH A 5 8 8 HOH HOH . L 3 HOH A 6 17 17 HOH HOH . L 3 HOH A 7 20 20 HOH HOH . L 3 HOH A 8 21 21 HOH HOH . L 3 HOH A 9 23 23 HOH HOH . L 3 HOH A 10 24 24 HOH HOH . L 3 HOH A 11 25 25 HOH HOH . L 3 HOH A 12 134 134 HOH HOH . L 3 HOH A 13 135 135 HOH HOH . L 3 HOH A 14 136 136 HOH HOH . L 3 HOH A 15 137 137 HOH HOH . L 3 HOH A 16 138 138 HOH HOH . L 3 HOH A 17 139 139 HOH HOH . L 3 HOH A 18 140 140 HOH HOH . L 3 HOH A 19 141 141 HOH HOH . L 3 HOH A 20 142 142 HOH HOH . L 3 HOH A 21 143 143 HOH HOH . L 3 HOH A 22 144 144 HOH HOH . L 3 HOH A 23 145 145 HOH HOH . L 3 HOH A 24 146 146 HOH HOH . L 3 HOH A 25 147 147 HOH HOH . L 3 HOH A 26 148 148 HOH HOH . L 3 HOH A 27 149 149 HOH HOH . L 3 HOH A 28 150 150 HOH HOH . L 3 HOH A 29 151 151 HOH HOH . L 3 HOH A 30 152 152 HOH HOH . L 3 HOH A 31 153 153 HOH HOH . L 3 HOH A 32 154 154 HOH HOH . L 3 HOH A 33 155 155 HOH HOH . L 3 HOH A 34 156 156 HOH HOH . L 3 HOH A 35 157 157 HOH HOH . L 3 HOH A 36 158 158 HOH HOH . L 3 HOH A 37 159 159 HOH HOH . L 3 HOH A 38 160 160 HOH HOH . L 3 HOH A 39 161 161 HOH HOH . L 3 HOH A 40 162 162 HOH HOH . L 3 HOH A 41 164 164 HOH HOH . L 3 HOH A 42 165 165 HOH HOH . L 3 HOH A 43 166 166 HOH HOH . L 3 HOH A 44 167 167 HOH HOH . L 3 HOH A 45 168 168 HOH HOH . L 3 HOH A 46 169 169 HOH HOH . L 3 HOH A 47 170 170 HOH HOH . L 3 HOH A 48 171 171 HOH HOH . L 3 HOH A 49 172 172 HOH HOH . L 3 HOH A 50 173 173 HOH HOH . L 3 HOH A 51 174 174 HOH HOH . L 3 HOH A 52 175 175 HOH HOH . L 3 HOH A 53 176 176 HOH HOH . L 3 HOH A 54 177 177 HOH HOH . L 3 HOH A 55 182 182 HOH HOH . L 3 HOH A 56 183 183 HOH HOH . L 3 HOH A 57 185 185 HOH HOH . L 3 HOH A 58 192 192 HOH HOH . L 3 HOH A 59 193 193 HOH HOH . L 3 HOH A 60 194 194 HOH HOH . L 3 HOH A 61 195 195 HOH HOH . M 3 HOH B 1 2 2 HOH HOH . M 3 HOH B 2 5 5 HOH HOH . M 3 HOH B 3 10 10 HOH HOH . M 3 HOH B 4 11 11 HOH HOH . M 3 HOH B 5 12 12 HOH HOH . M 3 HOH B 6 14 14 HOH HOH . M 3 HOH B 7 15 15 HOH HOH . M 3 HOH B 8 16 16 HOH HOH . M 3 HOH B 9 18 18 HOH HOH . M 3 HOH B 10 134 134 HOH HOH . M 3 HOH B 11 135 135 HOH HOH . M 3 HOH B 12 136 136 HOH HOH . M 3 HOH B 13 137 137 HOH HOH . M 3 HOH B 14 138 138 HOH HOH . M 3 HOH B 15 139 139 HOH HOH . M 3 HOH B 16 140 140 HOH HOH . M 3 HOH B 17 141 141 HOH HOH . M 3 HOH B 18 142 142 HOH HOH . M 3 HOH B 19 143 143 HOH HOH . M 3 HOH B 20 144 144 HOH HOH . M 3 HOH B 21 145 145 HOH HOH . M 3 HOH B 22 146 146 HOH HOH . M 3 HOH B 23 147 147 HOH HOH . M 3 HOH B 24 148 148 HOH HOH . M 3 HOH B 25 149 149 HOH HOH . M 3 HOH B 26 150 150 HOH HOH . M 3 HOH B 27 151 151 HOH HOH . M 3 HOH B 28 152 152 HOH HOH . M 3 HOH B 29 153 153 HOH HOH . M 3 HOH B 30 154 154 HOH HOH . M 3 HOH B 31 155 155 HOH HOH . M 3 HOH B 32 156 156 HOH HOH . M 3 HOH B 33 157 157 HOH HOH . M 3 HOH B 34 158 158 HOH HOH . M 3 HOH B 35 159 159 HOH HOH . M 3 HOH B 36 160 160 HOH HOH . M 3 HOH B 37 161 161 HOH HOH . M 3 HOH B 38 162 162 HOH HOH . M 3 HOH B 39 163 163 HOH HOH . M 3 HOH B 40 164 164 HOH HOH . M 3 HOH B 41 165 165 HOH HOH . M 3 HOH B 42 166 166 HOH HOH . M 3 HOH B 43 167 167 HOH HOH . M 3 HOH B 44 168 168 HOH HOH . M 3 HOH B 45 169 169 HOH HOH . M 3 HOH B 46 170 170 HOH HOH . M 3 HOH B 47 171 171 HOH HOH . M 3 HOH B 48 172 172 HOH HOH . M 3 HOH B 49 173 173 HOH HOH . M 3 HOH B 50 174 174 HOH HOH . M 3 HOH B 51 175 175 HOH HOH . M 3 HOH B 52 176 176 HOH HOH . M 3 HOH B 53 177 177 HOH HOH . M 3 HOH B 54 178 178 HOH HOH . M 3 HOH B 55 179 179 HOH HOH . M 3 HOH B 56 180 180 HOH HOH . M 3 HOH B 57 181 181 HOH HOH . M 3 HOH B 58 186 186 HOH HOH . M 3 HOH B 59 187 187 HOH HOH . M 3 HOH B 60 191 191 HOH HOH . N 3 HOH C 1 19 19 HOH HOH . N 3 HOH C 2 22 22 HOH HOH . N 3 HOH C 3 134 134 HOH HOH . N 3 HOH C 4 135 135 HOH HOH . N 3 HOH C 5 136 136 HOH HOH . N 3 HOH C 6 137 137 HOH HOH . N 3 HOH C 7 138 138 HOH HOH . N 3 HOH C 8 139 139 HOH HOH . N 3 HOH C 9 140 140 HOH HOH . N 3 HOH C 10 141 141 HOH HOH . N 3 HOH C 11 142 142 HOH HOH . N 3 HOH C 12 143 143 HOH HOH . N 3 HOH C 13 144 144 HOH HOH . N 3 HOH C 14 145 145 HOH HOH . N 3 HOH C 15 146 146 HOH HOH . N 3 HOH C 16 147 147 HOH HOH . N 3 HOH C 17 148 148 HOH HOH . N 3 HOH C 18 149 149 HOH HOH . N 3 HOH C 19 150 150 HOH HOH . N 3 HOH C 20 151 151 HOH HOH . N 3 HOH C 21 152 152 HOH HOH . N 3 HOH C 22 153 153 HOH HOH . N 3 HOH C 23 154 154 HOH HOH . N 3 HOH C 24 155 155 HOH HOH . N 3 HOH C 25 156 156 HOH HOH . N 3 HOH C 26 157 157 HOH HOH . N 3 HOH C 27 158 158 HOH HOH . N 3 HOH C 28 159 159 HOH HOH . N 3 HOH C 29 160 160 HOH HOH . N 3 HOH C 30 168 168 HOH HOH . N 3 HOH C 31 171 171 HOH HOH . N 3 HOH C 32 172 172 HOH HOH . N 3 HOH C 33 173 173 HOH HOH . N 3 HOH C 34 184 184 HOH HOH . N 3 HOH C 35 189 189 HOH HOH . N 3 HOH C 36 196 196 HOH HOH . O 3 HOH D 1 6 6 HOH HOH . O 3 HOH D 2 9 9 HOH HOH . O 3 HOH D 3 13 13 HOH HOH . O 3 HOH D 4 134 134 HOH HOH . O 3 HOH D 5 135 135 HOH HOH . O 3 HOH D 6 136 136 HOH HOH . O 3 HOH D 7 137 137 HOH HOH . O 3 HOH D 8 138 138 HOH HOH . O 3 HOH D 9 139 139 HOH HOH . O 3 HOH D 10 140 140 HOH HOH . O 3 HOH D 11 141 141 HOH HOH . O 3 HOH D 12 142 142 HOH HOH . O 3 HOH D 13 143 143 HOH HOH . O 3 HOH D 14 144 144 HOH HOH . O 3 HOH D 15 145 145 HOH HOH . O 3 HOH D 16 146 146 HOH HOH . O 3 HOH D 17 147 147 HOH HOH . O 3 HOH D 18 148 148 HOH HOH . O 3 HOH D 19 149 149 HOH HOH . O 3 HOH D 20 150 150 HOH HOH . O 3 HOH D 21 151 151 HOH HOH . O 3 HOH D 22 152 152 HOH HOH . O 3 HOH D 23 153 153 HOH HOH . O 3 HOH D 24 155 155 HOH HOH . O 3 HOH D 25 156 156 HOH HOH . O 3 HOH D 26 157 157 HOH HOH . O 3 HOH D 27 158 158 HOH HOH . O 3 HOH D 28 159 159 HOH HOH . O 3 HOH D 29 162 162 HOH HOH . O 3 HOH D 30 165 165 HOH HOH . O 3 HOH D 31 174 174 HOH HOH . O 3 HOH D 32 179 179 HOH HOH . O 3 HOH D 33 180 180 HOH HOH . O 3 HOH D 34 188 188 HOH HOH . O 3 HOH D 35 190 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 1.906 -6.039 -2.732 1 60.26 ? C1 NAG 1395 A 1 HETATM 2 C C2 NAG . . . E 2 0.947 -4.95 -2.224 1 72.16 ? C2 NAG 1395 A 1 HETATM 3 C C3 NAG . . . E 2 0.126 -4.29 -3.359 1 72.73 ? C3 NAG 1395 A 1 HETATM 4 C C4 NAG . . . E 2 1.044 -3.7 -4.436 1 73.8 ? C4 NAG 1395 A 1 HETATM 5 C C5 NAG . . . E 2 2.196 -4.676 -4.841 1 70.78 ? C5 NAG 1395 A 1 HETATM 6 C C6 NAG . . . E 2 3.481 -4.04 -5.415 1 72.31 ? C6 NAG 1395 A 1 HETATM 7 C C7 NAG . . . E 2 -0.473 -4.745 -0.224 1 78.1 ? C7 NAG 1395 A 1 HETATM 8 C C8 NAG . . . E 2 -0.355 -3.231 -0.217 1 77.48 ? C8 NAG 1395 A 1 HETATM 9 N N2 NAG . . . E 2 0.125 -5.488 -1.154 1 74.02 ? N2 NAG 1395 A 1 HETATM 10 O O3 NAG . . . E 2 -0.66 -3.216 -2.866 1 73.71 ? O3 NAG 1395 A 1 HETATM 11 O O4 NAG . . . E 2 0.184 -3.213 -5.475 1 74.72 ? O4 NAG 1395 A 1 HETATM 12 O O5 NAG . . . E 2 2.73 -5.393 -3.716 1 67.01 ? O5 NAG 1395 A 1 HETATM 13 O O6 NAG . . . E 2 3.289 -2.913 -6.25 1 76.62 ? O6 NAG 1395 A 1 HETATM 14 O O7 NAG . . . E 2 -1.142 -5.311 0.637 1 81.09 ? O7 NAG 1395 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #