data_3M47 # _model_server_result.job_id MvU-gRz-EQSrTrPwzZYNtQ _model_server_result.datetime_utc '2024-11-27 20:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":230}' # _entry.id 3M47 # _exptl.entry_id 3M47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M47 _cell.length_a 56.905 _cell.length_b 56.908 _cell.length_c 125.452 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3M47 _atom_sites.fract_transf_matrix[1][1] 0.017573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 229 2 GOL GOL . D 2 GOL A 1 230 4 GOL GOL . E 2 GOL A 1 231 6 GOL GOL . F 2 GOL B 1 229 1 GOL GOL . G 2 GOL B 1 230 3 GOL GOL . H 2 GOL B 1 231 5 GOL GOL . I 3 HOH A 1 232 232 HOH HOH . I 3 HOH A 2 233 1 HOH HOH . I 3 HOH A 3 234 234 HOH HOH . I 3 HOH A 4 235 3 HOH HOH . I 3 HOH A 5 236 5 HOH HOH . I 3 HOH A 6 237 7 HOH HOH . I 3 HOH A 7 238 8 HOH HOH . I 3 HOH A 8 239 10 HOH HOH . I 3 HOH A 9 240 240 HOH HOH . I 3 HOH A 10 241 13 HOH HOH . I 3 HOH A 11 242 16 HOH HOH . I 3 HOH A 12 243 17 HOH HOH . I 3 HOH A 13 244 244 HOH HOH . I 3 HOH A 14 245 245 HOH HOH . I 3 HOH A 15 246 246 HOH HOH . I 3 HOH A 16 247 19 HOH HOH . I 3 HOH A 17 248 21 HOH HOH . I 3 HOH A 18 249 23 HOH HOH . I 3 HOH A 19 250 26 HOH HOH . I 3 HOH A 20 251 28 HOH HOH . I 3 HOH A 21 252 31 HOH HOH . I 3 HOH A 22 253 32 HOH HOH . I 3 HOH A 23 254 33 HOH HOH . I 3 HOH A 24 255 36 HOH HOH . I 3 HOH A 25 256 37 HOH HOH . I 3 HOH A 26 257 38 HOH HOH . I 3 HOH A 27 258 40 HOH HOH . I 3 HOH A 28 259 45 HOH HOH . I 3 HOH A 29 260 46 HOH HOH . I 3 HOH A 30 261 47 HOH HOH . I 3 HOH A 31 262 49 HOH HOH . I 3 HOH A 32 263 51 HOH HOH . I 3 HOH A 33 264 52 HOH HOH . I 3 HOH A 34 265 54 HOH HOH . I 3 HOH A 35 266 58 HOH HOH . I 3 HOH A 36 267 59 HOH HOH . I 3 HOH A 37 268 65 HOH HOH . I 3 HOH A 38 269 66 HOH HOH . I 3 HOH A 39 270 67 HOH HOH . I 3 HOH A 40 271 69 HOH HOH . I 3 HOH A 41 272 72 HOH HOH . I 3 HOH A 42 273 73 HOH HOH . I 3 HOH A 43 274 74 HOH HOH . I 3 HOH A 44 275 80 HOH HOH . I 3 HOH A 45 276 83 HOH HOH . I 3 HOH A 46 277 85 HOH HOH . I 3 HOH A 47 278 86 HOH HOH . I 3 HOH A 48 279 88 HOH HOH . I 3 HOH A 49 280 91 HOH HOH . I 3 HOH A 50 281 94 HOH HOH . I 3 HOH A 51 282 99 HOH HOH . I 3 HOH A 52 283 100 HOH HOH . I 3 HOH A 53 284 104 HOH HOH . I 3 HOH A 54 285 105 HOH HOH . I 3 HOH A 55 286 110 HOH HOH . I 3 HOH A 56 287 111 HOH HOH . I 3 HOH A 57 288 113 HOH HOH . I 3 HOH A 58 289 114 HOH HOH . I 3 HOH A 59 290 115 HOH HOH . I 3 HOH A 60 291 116 HOH HOH . I 3 HOH A 61 292 117 HOH HOH . I 3 HOH A 62 293 121 HOH HOH . I 3 HOH A 63 294 123 HOH HOH . I 3 HOH A 64 295 127 HOH HOH . I 3 HOH A 65 296 132 HOH HOH . I 3 HOH A 66 297 135 HOH HOH . I 3 HOH A 67 298 136 HOH HOH . I 3 HOH A 68 299 137 HOH HOH . I 3 HOH A 69 300 140 HOH HOH . I 3 HOH A 70 301 301 HOH HOH . I 3 HOH A 71 302 141 HOH HOH . I 3 HOH A 72 303 144 HOH HOH . I 3 HOH A 73 304 304 HOH HOH . I 3 HOH A 74 305 305 HOH HOH . I 3 HOH A 75 306 145 HOH HOH . I 3 HOH A 76 307 307 HOH HOH . I 3 HOH A 77 308 308 HOH HOH . I 3 HOH A 78 309 147 HOH HOH . I 3 HOH A 79 310 149 HOH HOH . I 3 HOH A 80 311 150 HOH HOH . I 3 HOH A 81 312 312 HOH HOH . I 3 HOH A 82 313 151 HOH HOH . I 3 HOH A 83 314 153 HOH HOH . I 3 HOH A 84 315 155 HOH HOH . I 3 HOH A 85 316 157 HOH HOH . I 3 HOH A 86 317 158 HOH HOH . I 3 HOH A 87 318 159 HOH HOH . I 3 HOH A 88 319 162 HOH HOH . I 3 HOH A 89 320 163 HOH HOH . I 3 HOH A 90 321 166 HOH HOH . I 3 HOH A 91 322 167 HOH HOH . I 3 HOH A 92 323 168 HOH HOH . I 3 HOH A 93 324 169 HOH HOH . I 3 HOH A 94 325 170 HOH HOH . I 3 HOH A 95 326 173 HOH HOH . I 3 HOH A 96 327 174 HOH HOH . I 3 HOH A 97 328 175 HOH HOH . I 3 HOH A 98 329 177 HOH HOH . I 3 HOH A 99 330 180 HOH HOH . I 3 HOH A 100 331 182 HOH HOH . I 3 HOH A 101 332 184 HOH HOH . I 3 HOH A 102 333 189 HOH HOH . I 3 HOH A 103 334 191 HOH HOH . I 3 HOH A 104 335 195 HOH HOH . I 3 HOH A 105 336 196 HOH HOH . I 3 HOH A 106 337 197 HOH HOH . I 3 HOH A 107 338 199 HOH HOH . I 3 HOH A 108 339 201 HOH HOH . I 3 HOH A 109 340 202 HOH HOH . I 3 HOH A 110 341 203 HOH HOH . I 3 HOH A 111 342 207 HOH HOH . I 3 HOH A 112 343 210 HOH HOH . I 3 HOH A 113 344 211 HOH HOH . I 3 HOH A 114 345 214 HOH HOH . I 3 HOH A 115 346 216 HOH HOH . I 3 HOH A 116 347 218 HOH HOH . I 3 HOH A 117 348 220 HOH HOH . I 3 HOH A 118 349 222 HOH HOH . I 3 HOH A 119 350 224 HOH HOH . I 3 HOH A 120 351 226 HOH HOH . I 3 HOH A 121 352 227 HOH HOH . I 3 HOH A 122 353 229 HOH HOH . I 3 HOH A 123 354 231 HOH HOH . J 3 HOH B 1 232 2 HOH HOH . J 3 HOH B 2 233 233 HOH HOH . J 3 HOH B 3 234 4 HOH HOH . J 3 HOH B 4 235 235 HOH HOH . J 3 HOH B 5 236 236 HOH HOH . J 3 HOH B 6 237 237 HOH HOH . J 3 HOH B 7 238 238 HOH HOH . J 3 HOH B 8 239 239 HOH HOH . J 3 HOH B 9 240 6 HOH HOH . J 3 HOH B 10 241 241 HOH HOH . J 3 HOH B 11 242 242 HOH HOH . J 3 HOH B 12 243 243 HOH HOH . J 3 HOH B 13 244 9 HOH HOH . J 3 HOH B 14 245 11 HOH HOH . J 3 HOH B 15 246 12 HOH HOH . J 3 HOH B 16 247 247 HOH HOH . J 3 HOH B 17 248 14 HOH HOH . J 3 HOH B 18 249 15 HOH HOH . J 3 HOH B 19 250 18 HOH HOH . J 3 HOH B 20 251 20 HOH HOH . J 3 HOH B 21 252 22 HOH HOH . J 3 HOH B 22 253 24 HOH HOH . J 3 HOH B 23 254 25 HOH HOH . J 3 HOH B 24 255 27 HOH HOH . J 3 HOH B 25 256 29 HOH HOH . J 3 HOH B 26 257 30 HOH HOH . J 3 HOH B 27 258 34 HOH HOH . J 3 HOH B 28 259 35 HOH HOH . J 3 HOH B 29 260 39 HOH HOH . J 3 HOH B 30 261 41 HOH HOH . J 3 HOH B 31 262 42 HOH HOH . J 3 HOH B 32 263 43 HOH HOH . J 3 HOH B 33 264 48 HOH HOH . J 3 HOH B 34 265 50 HOH HOH . J 3 HOH B 35 266 53 HOH HOH . J 3 HOH B 36 267 55 HOH HOH . J 3 HOH B 37 268 56 HOH HOH . J 3 HOH B 38 269 57 HOH HOH . J 3 HOH B 39 270 61 HOH HOH . J 3 HOH B 40 271 62 HOH HOH . J 3 HOH B 41 272 63 HOH HOH . J 3 HOH B 42 273 64 HOH HOH . J 3 HOH B 43 274 68 HOH HOH . J 3 HOH B 44 275 71 HOH HOH . J 3 HOH B 45 276 75 HOH HOH . J 3 HOH B 46 277 76 HOH HOH . J 3 HOH B 47 278 77 HOH HOH . J 3 HOH B 48 279 79 HOH HOH . J 3 HOH B 49 280 81 HOH HOH . J 3 HOH B 50 281 84 HOH HOH . J 3 HOH B 51 282 89 HOH HOH . J 3 HOH B 52 283 90 HOH HOH . J 3 HOH B 53 284 92 HOH HOH . J 3 HOH B 54 285 93 HOH HOH . J 3 HOH B 55 286 95 HOH HOH . J 3 HOH B 56 287 101 HOH HOH . J 3 HOH B 57 288 102 HOH HOH . J 3 HOH B 58 289 106 HOH HOH . J 3 HOH B 59 290 109 HOH HOH . J 3 HOH B 60 291 112 HOH HOH . J 3 HOH B 61 292 118 HOH HOH . J 3 HOH B 62 293 119 HOH HOH . J 3 HOH B 63 294 125 HOH HOH . J 3 HOH B 64 295 126 HOH HOH . J 3 HOH B 65 296 128 HOH HOH . J 3 HOH B 66 297 129 HOH HOH . J 3 HOH B 67 298 130 HOH HOH . J 3 HOH B 68 299 131 HOH HOH . J 3 HOH B 69 300 133 HOH HOH . J 3 HOH B 70 301 134 HOH HOH . J 3 HOH B 71 302 302 HOH HOH . J 3 HOH B 72 303 303 HOH HOH . J 3 HOH B 73 304 138 HOH HOH . J 3 HOH B 74 305 139 HOH HOH . J 3 HOH B 75 306 142 HOH HOH . J 3 HOH B 76 307 143 HOH HOH . J 3 HOH B 77 308 146 HOH HOH . J 3 HOH B 78 309 148 HOH HOH . J 3 HOH B 79 310 310 HOH HOH . J 3 HOH B 80 311 152 HOH HOH . J 3 HOH B 81 312 154 HOH HOH . J 3 HOH B 82 313 313 HOH HOH . J 3 HOH B 83 314 156 HOH HOH . J 3 HOH B 84 315 160 HOH HOH . J 3 HOH B 85 316 161 HOH HOH . J 3 HOH B 86 317 164 HOH HOH . J 3 HOH B 87 318 165 HOH HOH . J 3 HOH B 88 319 171 HOH HOH . J 3 HOH B 89 320 172 HOH HOH . J 3 HOH B 90 321 176 HOH HOH . J 3 HOH B 91 322 178 HOH HOH . J 3 HOH B 92 323 179 HOH HOH . J 3 HOH B 93 324 181 HOH HOH . J 3 HOH B 94 325 183 HOH HOH . J 3 HOH B 95 326 185 HOH HOH . J 3 HOH B 96 327 187 HOH HOH . J 3 HOH B 97 328 188 HOH HOH . J 3 HOH B 98 329 190 HOH HOH . J 3 HOH B 99 330 192 HOH HOH . J 3 HOH B 100 331 193 HOH HOH . J 3 HOH B 101 332 194 HOH HOH . J 3 HOH B 102 333 198 HOH HOH . J 3 HOH B 103 334 204 HOH HOH . J 3 HOH B 104 335 206 HOH HOH . J 3 HOH B 105 336 208 HOH HOH . J 3 HOH B 106 337 209 HOH HOH . J 3 HOH B 107 338 212 HOH HOH . J 3 HOH B 108 339 213 HOH HOH . J 3 HOH B 109 340 215 HOH HOH . J 3 HOH B 110 341 217 HOH HOH . J 3 HOH B 111 342 219 HOH HOH . J 3 HOH B 112 343 221 HOH HOH . J 3 HOH B 113 344 223 HOH HOH . J 3 HOH B 114 345 228 HOH HOH . J 3 HOH B 115 346 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -0.441 48.862 -20.848 1 31.79 ? C1 GOL 230 A 1 HETATM 2 O O1 GOL . . . D 2 -0.78 49.262 -19.541 1 40 ? O1 GOL 230 A 1 HETATM 3 C C2 GOL . . . D 2 -1.595 48.081 -21.441 1 33.8 ? C2 GOL 230 A 1 HETATM 4 O O2 GOL . . . D 2 -2.799 48.508 -20.848 1 37.19 ? O2 GOL 230 A 1 HETATM 5 C C3 GOL . . . D 2 -1.645 48.288 -22.946 1 30.25 ? C3 GOL 230 A 1 HETATM 6 O O3 GOL . . . D 2 -2.017 49.617 -23.228 1 43.54 ? O3 GOL 230 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #