data_3M4B # _model_server_result.job_id elpsKJe0Eak6Sqw-t7bobg _model_server_result.datetime_utc '2024-11-06 15:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":107}' # _entry.id 3M4B # _exptl.entry_id 3M4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M4B _cell.length_a 125.363 _cell.length_b 125.363 _cell.length_c 164.509 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 V N N ? 4 W N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 67 A CYS 67 1_555 F CH3 ACT . A ACT 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? covale ? covale2 B SG CYS 67 B CYS 67 1_555 L CH3 ACT . B ACT 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? covale ? covale3 C SG CYS 67 C CYS 67 1_555 S CH3 ACT . C ACT 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? covale ? covale4 D SG CYS 67 D CYS 67 1_555 U CH3 ACT . D ACT 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc1 A O ALA 1 A ALA 1 1_555 G ZN ZN . A ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A N ALA 1 A ALA 1 1_555 G ZN ZN . A ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc3 A SD MET 7 A MET 7 1_555 E FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 A OE2 GLU 8 A GLU 8 1_555 H ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc5 A OD2 ASP 12 A ASP 12 1_555 H ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 A OD2 ASP 39 A ASP 39 1_555 G ZN ZN . A ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc7 A OE1 GLU 57 A GLU 57 1_555 J ZN ZN . A ZN 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc8 A NE2 HIS 59 A HIS 59 1_555 I ZN ZN . A ZN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc9 A NE2 HIS 102 A HIS 102 1_555 E FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc10 G ZN ZN . A ZN 107 1_555 Y O HOH . A HOH 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc11 I ZN ZN . A ZN 109 1_555 Y O HOH . A HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc12 J ZN ZN . A ZN 110 1_555 Y O HOH . A HOH 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc13 B N ALA 1 B ALA 1 1_555 M ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc14 B O ALA 1 B ALA 1 1_555 M ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc15 B SD MET 7 B MET 7 1_555 K FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 B OE2 GLU 8 B GLU 8 1_555 N ZN ZN . B ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc17 B OD2 ASP 12 B ASP 12 1_555 N ZN ZN . B ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc18 B OD2 ASP 39 B ASP 39 1_555 M ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc19 B OD1 ASP 39 B ASP 39 1_555 M ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc20 B NE2 HIS 59 B HIS 59 1_555 O ZN ZN . B ZN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc21 B NE2 HIS 77 B HIS 77 1_555 Q ZN ZN . B ZN 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc22 B NE2 HIS 102 B HIS 102 1_555 K FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc23 M ZN ZN . B ZN 107 1_555 Z O HOH . B HOH 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc24 N ZN ZN . B ZN 108 1_555 D OE2 GLU 8 D GLU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc25 N ZN ZN . B ZN 108 1_555 D OD2 ASP 12 D ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc26 N ZN ZN . B ZN 108 1_555 D OD1 ASP 12 D ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc27 O ZN ZN . B ZN 109 1_555 Z O HOH . B HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc28 P ZN ZN . B ZN 110 1_555 L OXT ACT . B ACT 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc29 C SD MET 7 C MET 7 1_555 R FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc30 C NE2 HIS 63 C HIS 63 1_555 V ZN ZN . D ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc31 C NE2 HIS 77 C HIS 77 1_555 W ZN ZN . D ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc32 C NE2 HIS 102 C HIS 102 1_555 R FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc33 S OXT ACT . C ACT 151 1_555 V ZN ZN . D ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc34 S O ACT . C ACT 151 1_555 V ZN ZN . D ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc35 D N ALA 1 D ALA 1 1_555 W ZN ZN . D ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc36 D O ALA 1 D ALA 1 1_555 W ZN ZN . D ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc37 D SD MET 7 D MET 7 1_555 T FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc38 D OD2 ASP 39 D ASP 39 1_555 W ZN ZN . D ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc39 D OD2 ASP 54 D ASP 54 1_555 V ZN ZN . D ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc40 D NE2 HIS 59 D HIS 59 1_555 V ZN ZN . D ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc41 D NE2 HIS 102 D HIS 102 1_555 T FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3M4B _atom_sites.fract_transf_matrix[1][1] 0.007977 _atom_sites.fract_transf_matrix[1][2] 0.004605 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 150 150 HEM HEM . F 3 ACT A 1 151 151 ACT ACT . G 4 ZN A 1 107 1 ZN ZN . H 4 ZN A 1 108 2 ZN ZN . I 4 ZN A 1 109 3 ZN ZN . J 4 ZN A 1 110 11 ZN ZN . K 2 HEM B 1 150 150 HEM HEM . L 3 ACT B 1 151 151 ACT ACT . M 4 ZN B 1 107 4 ZN ZN . N 4 ZN B 1 108 5 ZN ZN . O 4 ZN B 1 109 6 ZN ZN . P 4 ZN B 1 110 7 ZN ZN . Q 4 ZN B 1 111 8 ZN ZN . R 2 HEM C 1 150 150 HEM HEM . S 3 ACT C 1 151 151 ACT ACT . T 2 HEM D 1 150 150 HEM HEM . U 3 ACT D 1 151 151 ACT ACT . V 4 ZN D 1 107 9 ZN ZN . W 4 ZN D 1 108 10 ZN ZN . X 4 ZN D 1 109 12 ZN ZN . Y 5 HOH A 1 111 1 HOH HOH . Y 5 HOH A 2 112 2 HOH HOH . Y 5 HOH A 3 113 4 HOH HOH . Y 5 HOH A 4 114 6 HOH HOH . Y 5 HOH A 5 115 13 HOH HOH . Y 5 HOH A 6 116 15 HOH HOH . Y 5 HOH A 7 117 18 HOH HOH . Y 5 HOH A 8 118 25 HOH HOH . Y 5 HOH A 9 119 27 HOH HOH . Y 5 HOH A 10 120 28 HOH HOH . Y 5 HOH A 11 121 32 HOH HOH . Y 5 HOH A 12 122 33 HOH HOH . Y 5 HOH A 13 123 34 HOH HOH . Y 5 HOH A 14 124 36 HOH HOH . Y 5 HOH A 15 125 40 HOH HOH . Y 5 HOH A 16 126 49 HOH HOH . Y 5 HOH A 17 127 55 HOH HOH . Y 5 HOH A 18 128 57 HOH HOH . Y 5 HOH A 19 129 58 HOH HOH . Y 5 HOH A 20 130 59 HOH HOH . Y 5 HOH A 21 131 61 HOH HOH . Y 5 HOH A 22 132 66 HOH HOH . Y 5 HOH A 23 133 67 HOH HOH . Y 5 HOH A 24 134 69 HOH HOH . Y 5 HOH A 25 135 70 HOH HOH . Y 5 HOH A 26 136 71 HOH HOH . Y 5 HOH A 27 137 72 HOH HOH . Y 5 HOH A 28 138 78 HOH HOH . Y 5 HOH A 29 139 82 HOH HOH . Z 5 HOH B 1 112 3 HOH HOH . Z 5 HOH B 2 113 5 HOH HOH . Z 5 HOH B 3 114 12 HOH HOH . Z 5 HOH B 4 115 20 HOH HOH . Z 5 HOH B 5 116 21 HOH HOH . Z 5 HOH B 6 117 22 HOH HOH . Z 5 HOH B 7 118 30 HOH HOH . Z 5 HOH B 8 119 43 HOH HOH . Z 5 HOH B 9 120 45 HOH HOH . Z 5 HOH B 10 121 46 HOH HOH . Z 5 HOH B 11 122 50 HOH HOH . Z 5 HOH B 12 123 51 HOH HOH . Z 5 HOH B 13 124 56 HOH HOH . Z 5 HOH B 14 125 60 HOH HOH . Z 5 HOH B 15 126 62 HOH HOH . Z 5 HOH B 16 127 63 HOH HOH . Z 5 HOH B 17 128 64 HOH HOH . Z 5 HOH B 18 129 68 HOH HOH . Z 5 HOH B 19 130 73 HOH HOH . Z 5 HOH B 20 131 74 HOH HOH . AA 5 HOH C 1 107 7 HOH HOH . AA 5 HOH C 2 108 8 HOH HOH . AA 5 HOH C 3 109 10 HOH HOH . AA 5 HOH C 4 110 14 HOH HOH . AA 5 HOH C 5 111 16 HOH HOH . AA 5 HOH C 6 112 19 HOH HOH . AA 5 HOH C 7 113 23 HOH HOH . AA 5 HOH C 8 114 24 HOH HOH . AA 5 HOH C 9 115 35 HOH HOH . AA 5 HOH C 10 116 38 HOH HOH . AA 5 HOH C 11 117 39 HOH HOH . AA 5 HOH C 12 118 41 HOH HOH . AA 5 HOH C 13 119 52 HOH HOH . AA 5 HOH C 14 120 53 HOH HOH . AA 5 HOH C 15 121 75 HOH HOH . AA 5 HOH C 16 122 76 HOH HOH . AA 5 HOH C 17 123 77 HOH HOH . AA 5 HOH C 18 124 80 HOH HOH . BA 5 HOH D 1 110 11 HOH HOH . BA 5 HOH D 2 111 17 HOH HOH . BA 5 HOH D 3 112 26 HOH HOH . BA 5 HOH D 4 113 29 HOH HOH . BA 5 HOH D 5 114 31 HOH HOH . BA 5 HOH D 6 115 37 HOH HOH . BA 5 HOH D 7 116 42 HOH HOH . BA 5 HOH D 8 117 44 HOH HOH . BA 5 HOH D 9 118 47 HOH HOH . BA 5 HOH D 10 119 48 HOH HOH . BA 5 HOH D 11 120 54 HOH HOH . BA 5 HOH D 12 121 65 HOH HOH . BA 5 HOH D 13 122 79 HOH HOH . BA 5 HOH D 14 123 81 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 4 _atom_site.Cartn_x 0.952 _atom_site.Cartn_y -37.432 _atom_site.Cartn_z -33.365 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 107 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #