data_3M4I # _model_server_result.job_id 4V5PYz6S_lQtQoJvXuoqEA _model_server_result.datetime_utc '2024-12-21 13:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3M4I # _exptl.entry_id 3M4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M4I _cell.length_a 52.815 _cell.length_b 52.815 _cell.length_c 190.462 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 224 n n C1 H11 MPD sing 225 n n C1 H12 MPD sing 226 n n C1 H13 MPD sing 227 n n C2 O2 MPD sing 228 n n C2 CM MPD sing 229 n n C2 C3 MPD sing 230 n n O2 HO2 MPD sing 231 n n CM HM1 MPD sing 232 n n CM HM2 MPD sing 233 n n CM HM3 MPD sing 234 n n C3 C4 MPD sing 235 n n C3 H31 MPD sing 236 n n C3 H32 MPD sing 237 n n C4 O4 MPD sing 238 n n C4 C5 MPD sing 239 n n C4 H4 MPD sing 240 n n O4 HO4 MPD sing 241 n n C5 H51 MPD sing 242 n n C5 H52 MPD sing 243 n n C5 H53 MPD sing 244 n n # _atom_sites.entry_id 3M4I _atom_sites.fract_transf_matrix[1][1] 0.018934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 1 1 MPD MPD . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 23 23 HOH HOH . C 3 HOH A 22 24 24 HOH HOH . C 3 HOH A 23 25 25 HOH HOH . C 3 HOH A 24 26 26 HOH HOH . C 3 HOH A 25 27 27 HOH HOH . C 3 HOH A 26 28 28 HOH HOH . C 3 HOH A 27 29 29 HOH HOH . C 3 HOH A 28 32 32 HOH HOH . C 3 HOH A 29 33 33 HOH HOH . C 3 HOH A 30 34 34 HOH HOH . C 3 HOH A 31 35 35 HOH HOH . C 3 HOH A 32 36 36 HOH HOH . C 3 HOH A 33 37 37 HOH HOH . C 3 HOH A 34 38 38 HOH HOH . C 3 HOH A 35 39 39 HOH HOH . C 3 HOH A 36 40 40 HOH HOH . C 3 HOH A 37 41 41 HOH HOH . C 3 HOH A 38 42 42 HOH HOH . C 3 HOH A 39 43 43 HOH HOH . C 3 HOH A 40 45 45 HOH HOH . C 3 HOH A 41 46 46 HOH HOH . C 3 HOH A 42 47 47 HOH HOH . C 3 HOH A 43 48 48 HOH HOH . C 3 HOH A 44 49 49 HOH HOH . C 3 HOH A 45 50 50 HOH HOH . C 3 HOH A 46 51 51 HOH HOH . C 3 HOH A 47 52 52 HOH HOH . C 3 HOH A 48 54 54 HOH HOH . C 3 HOH A 49 55 55 HOH HOH . C 3 HOH A 50 56 56 HOH HOH . C 3 HOH A 51 57 57 HOH HOH . C 3 HOH A 52 58 58 HOH HOH . C 3 HOH A 53 59 59 HOH HOH . C 3 HOH A 54 60 60 HOH HOH . C 3 HOH A 55 61 61 HOH HOH . C 3 HOH A 56 62 62 HOH HOH . C 3 HOH A 57 63 63 HOH HOH . C 3 HOH A 58 64 64 HOH HOH . C 3 HOH A 59 65 65 HOH HOH . C 3 HOH A 60 66 66 HOH HOH . C 3 HOH A 61 68 68 HOH HOH . C 3 HOH A 62 69 69 HOH HOH . C 3 HOH A 63 70 70 HOH HOH . C 3 HOH A 64 71 71 HOH HOH . C 3 HOH A 65 72 72 HOH HOH . C 3 HOH A 66 73 73 HOH HOH . C 3 HOH A 67 75 75 HOH HOH . C 3 HOH A 68 77 77 HOH HOH . C 3 HOH A 69 81 81 HOH HOH . C 3 HOH A 70 83 83 HOH HOH . C 3 HOH A 71 84 84 HOH HOH . C 3 HOH A 72 87 87 HOH HOH . C 3 HOH A 73 88 88 HOH HOH . C 3 HOH A 74 89 89 HOH HOH . C 3 HOH A 75 90 90 HOH HOH . C 3 HOH A 76 92 92 HOH HOH . C 3 HOH A 77 94 94 HOH HOH . C 3 HOH A 78 95 95 HOH HOH . C 3 HOH A 79 96 96 HOH HOH . C 3 HOH A 80 98 98 HOH HOH . C 3 HOH A 81 102 102 HOH HOH . C 3 HOH A 82 106 106 HOH HOH . C 3 HOH A 83 107 107 HOH HOH . C 3 HOH A 84 108 108 HOH HOH . C 3 HOH A 85 109 109 HOH HOH . C 3 HOH A 86 110 110 HOH HOH . C 3 HOH A 87 113 113 HOH HOH . C 3 HOH A 88 116 116 HOH HOH . C 3 HOH A 89 117 117 HOH HOH . C 3 HOH A 90 118 118 HOH HOH . C 3 HOH A 91 121 121 HOH HOH . C 3 HOH A 92 124 124 HOH HOH . C 3 HOH A 93 125 125 HOH HOH . C 3 HOH A 94 127 127 HOH HOH . C 3 HOH A 95 129 129 HOH HOH . C 3 HOH A 96 130 130 HOH HOH . C 3 HOH A 97 132 132 HOH HOH . C 3 HOH A 98 133 133 HOH HOH . C 3 HOH A 99 134 134 HOH HOH . C 3 HOH A 100 135 135 HOH HOH . C 3 HOH A 101 142 142 HOH HOH . C 3 HOH A 102 145 145 HOH HOH . C 3 HOH A 103 676 1 HOH HOH . C 3 HOH A 104 677 1 HOH HOH . C 3 HOH A 105 678 2 HOH HOH . C 3 HOH A 106 679 3 HOH HOH . C 3 HOH A 107 680 4 HOH HOH . C 3 HOH A 108 681 5 HOH HOH . C 3 HOH A 109 682 6 HOH HOH . C 3 HOH A 110 683 7 HOH HOH . C 3 HOH A 111 684 9 HOH HOH . C 3 HOH A 112 685 10 HOH HOH . C 3 HOH A 113 686 11 HOH HOH . C 3 HOH A 114 687 12 HOH HOH . C 3 HOH A 115 688 14 HOH HOH . C 3 HOH A 116 689 15 HOH HOH . C 3 HOH A 117 690 16 HOH HOH . C 3 HOH A 118 691 20 HOH HOH . C 3 HOH A 119 692 21 HOH HOH . C 3 HOH A 120 693 23 HOH HOH . C 3 HOH A 121 694 24 HOH HOH . C 3 HOH A 122 695 25 HOH HOH . C 3 HOH A 123 696 27 HOH HOH . C 3 HOH A 124 697 28 HOH HOH . C 3 HOH A 125 698 29 HOH HOH . C 3 HOH A 126 699 33 HOH HOH . C 3 HOH A 127 700 34 HOH HOH . C 3 HOH A 128 701 35 HOH HOH . C 3 HOH A 129 702 36 HOH HOH . C 3 HOH A 130 703 37 HOH HOH . C 3 HOH A 131 704 39 HOH HOH . C 3 HOH A 132 705 43 HOH HOH . C 3 HOH A 133 706 47 HOH HOH . C 3 HOH A 134 707 48 HOH HOH . C 3 HOH A 135 708 49 HOH HOH . C 3 HOH A 136 709 51 HOH HOH . C 3 HOH A 137 710 57 HOH HOH . C 3 HOH A 138 711 58 HOH HOH . C 3 HOH A 139 712 60 HOH HOH . C 3 HOH A 140 713 62 HOH HOH . C 3 HOH A 141 714 66 HOH HOH . C 3 HOH A 142 715 69 HOH HOH . C 3 HOH A 143 716 84 HOH HOH . C 3 HOH A 144 717 88 HOH HOH . C 3 HOH A 145 718 89 HOH HOH . C 3 HOH A 146 719 130 HOH HOH . C 3 HOH A 147 720 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 -18.042 5.455 -10.671 1 49.78 ? C1 MPD 1 A 1 HETATM 2 C C2 MPD . . . B 2 -18.049 4.365 -9.608 1 46.49 ? C2 MPD 1 A 1 HETATM 3 O O2 MPD . . . B 2 -18.788 4.845 -8.451 1 50.44 ? O2 MPD 1 A 1 HETATM 4 C CM MPD . . . B 2 -18.802 3.172 -10.175 1 49.04 ? CM MPD 1 A 1 HETATM 5 C C3 MPD . . . B 2 -16.609 3.952 -9.261 1 47.58 ? C3 MPD 1 A 1 HETATM 6 C C4 MPD . . . B 2 -15.983 4.51 -7.975 1 47.78 ? C4 MPD 1 A 1 HETATM 7 O O4 MPD . . . B 2 -14.803 3.789 -7.69 1 49.81 ? O4 MPD 1 A 1 HETATM 8 C C5 MPD . . . B 2 -15.619 5.989 -8.069 1 47.62 ? C5 MPD 1 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #