data_3M4J
#
_model_server_result.job_id            GdHAlBRSsNs4ZSg-AYv16Q 
_model_server_result.datetime_utc      '2024-12-26 15:36:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":345}' 
#
_entry.id    3M4J 
#
_exptl.entry_id    3M4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              296.214 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3M4J 
_cell.length_a            128.88 
_cell.length_b            128.88 
_cell.length_c            128.88 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_665 -z+3/2,-x+1,y+1/2 0 0 -1 -1 0 0 0 1 0 193.32 128.88 64.44 
3 'crystal symmetry operation' 10_646 -y+1,z-1/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 128.88 -64.44 193.32 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 321 A VAL 301 1_555 A N KCX 322 A KCX 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C KCX 322 A KCX 302 1_555 A N ALA 323 A ALA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C9 H17 N2 O7 P' 
_chem_comp.formula_weight    296.214 
_chem_comp.id                PA9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C CA PA9 sing 263 n n 
CA N1 PA9 sing 264 n n 
CA CB PA9 sing 265 n n 
CA HA PA9 sing 266 n n 
CG CB PA9 sing 267 n n 
CB HB PA9 sing 268 n n 
CB HBA PA9 sing 269 n n 
CG CD PA9 sing 270 n n 
CG HG PA9 sing 271 n n 
CG HGA PA9 sing 272 n n 
CD N2 PA9 sing 273 n n 
CD HD PA9 sing 274 n n 
CD HDA PA9 sing 275 n n 
O C PA9 doub 276 n n 
OXT C PA9 sing 277 n n 
OXT HOXT PA9 sing 278 n n 
O1 C1 PA9 doub 279 n n 
C1 C2 PA9 sing 280 n n 
C1 N1 PA9 sing 281 n n 
O1P P PA9 doub 282 n n 
C4 P PA9 sing 283 n n 
P O2P PA9 sing 284 n n 
P O3P PA9 sing 285 n n 
O2P HO2P PA9 sing 286 n n 
O3P HO3P PA9 sing 287 n n 
N1 HN1 PA9 sing 288 n n 
C2 H2 PA9 sing 289 n n 
C2 H2A PA9 sing 290 n n 
C2 H2B PA9 sing 291 n n 
N2 C3 PA9 sing 292 n n 
N2 HN2 PA9 sing 293 n n 
O2 C3 PA9 doub 294 n n 
C3 C4 PA9 sing 295 n n 
C4 H4 PA9 sing 296 n n 
C4 H4A PA9 sing 297 n n 
#
_atom_sites.entry_id                     3M4J 
_atom_sites.fract_transf_matrix[1][1]    0.007759 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007759 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PA9 A 1 345 345 PA9 PA9 . 
C 3 SO4 A 1 350 350 SO4 SO4 . 
D 4 HOH A 1 340 1 HOH TIP . 
D 4 HOH A 2 341 2 HOH TIP . 
D 4 HOH A 3 342 3 HOH TIP . 
D 4 HOH A 4 343 4 HOH TIP . 
D 4 HOH A 5 344 5 HOH TIP . 
D 4 HOH A 6 346 6 HOH TIP . 
D 4 HOH A 7 347 7 HOH TIP . 
D 4 HOH A 8 348 8 HOH TIP . 
D 4 HOH A 9 349 9 HOH TIP . 
D 4 HOH A 10 351 10 HOH TIP . 
D 4 HOH A 11 352 11 HOH TIP . 
D 4 HOH A 12 353 12 HOH TIP . 
D 4 HOH A 13 354 13 HOH TIP . 
D 4 HOH A 14 355 14 HOH TIP . 
D 4 HOH A 15 356 15 HOH TIP . 
D 4 HOH A 16 357 16 HOH TIP . 
D 4 HOH A 17 358 17 HOH TIP . 
D 4 HOH A 18 359 18 HOH TIP . 
D 4 HOH A 19 360 19 HOH TIP . 
D 4 HOH A 20 361 20 HOH TIP . 
D 4 HOH A 21 362 21 HOH TIP . 
D 4 HOH A 22 363 22 HOH TIP . 
D 4 HOH A 23 364 23 HOH TIP . 
D 4 HOH A 24 365 24 HOH TIP . 
D 4 HOH A 25 366 25 HOH TIP . 
D 4 HOH A 26 367 26 HOH TIP . 
D 4 HOH A 27 368 27 HOH TIP . 
D 4 HOH A 28 369 28 HOH TIP . 
D 4 HOH A 29 370 29 HOH TIP . 
D 4 HOH A 30 371 30 HOH TIP . 
D 4 HOH A 31 372 31 HOH TIP . 
D 4 HOH A 32 373 32 HOH TIP . 
D 4 HOH A 33 374 33 HOH TIP . 
D 4 HOH A 34 375 34 HOH TIP . 
D 4 HOH A 35 376 35 HOH TIP . 
D 4 HOH A 36 377 36 HOH TIP . 
D 4 HOH A 37 378 37 HOH TIP . 
D 4 HOH A 38 379 38 HOH TIP . 
D 4 HOH A 39 380 39 HOH TIP . 
D 4 HOH A 40 381 40 HOH TIP . 
D 4 HOH A 41 382 41 HOH TIP . 
D 4 HOH A 42 383 42 HOH TIP . 
D 4 HOH A 43 384 43 HOH TIP . 
D 4 HOH A 44 385 44 HOH TIP . 
D 4 HOH A 45 386 45 HOH TIP . 
D 4 HOH A 46 387 46 HOH TIP . 
D 4 HOH A 47 388 47 HOH TIP . 
D 4 HOH A 48 389 48 HOH TIP . 
D 4 HOH A 49 390 49 HOH TIP . 
D 4 HOH A 50 391 50 HOH TIP . 
D 4 HOH A 51 392 51 HOH TIP . 
D 4 HOH A 52 393 52 HOH TIP . 
D 4 HOH A 53 394 53 HOH TIP . 
D 4 HOH A 54 395 54 HOH TIP . 
D 4 HOH A 55 396 55 HOH TIP . 
D 4 HOH A 56 397 56 HOH TIP . 
D 4 HOH A 57 398 57 HOH TIP . 
D 4 HOH A 58 399 58 HOH TIP . 
D 4 HOH A 59 400 59 HOH TIP . 
D 4 HOH A 60 401 60 HOH TIP . 
D 4 HOH A 61 402 61 HOH TIP . 
D 4 HOH A 62 403 62 HOH TIP . 
D 4 HOH A 63 404 63 HOH TIP . 
D 4 HOH A 64 405 64 HOH TIP . 
D 4 HOH A 65 406 65 HOH TIP . 
D 4 HOH A 66 407 66 HOH TIP . 
D 4 HOH A 67 408 67 HOH TIP . 
D 4 HOH A 68 409 68 HOH TIP . 
D 4 HOH A 69 410 69 HOH TIP . 
D 4 HOH A 70 411 70 HOH TIP . 
D 4 HOH A 71 412 71 HOH TIP . 
D 4 HOH A 72 413 72 HOH TIP . 
D 4 HOH A 73 414 73 HOH TIP . 
D 4 HOH A 74 415 74 HOH TIP . 
D 4 HOH A 75 416 75 HOH TIP . 
D 4 HOH A 76 417 76 HOH TIP . 
D 4 HOH A 77 418 77 HOH TIP . 
D 4 HOH A 78 419 78 HOH TIP . 
D 4 HOH A 79 420 79 HOH TIP . 
D 4 HOH A 80 421 80 HOH TIP . 
D 4 HOH A 81 422 81 HOH TIP . 
D 4 HOH A 82 423 82 HOH TIP . 
D 4 HOH A 83 424 83 HOH TIP . 
D 4 HOH A 84 425 84 HOH TIP . 
D 4 HOH A 85 426 85 HOH TIP . 
D 4 HOH A 86 427 86 HOH TIP . 
D 4 HOH A 87 428 87 HOH TIP . 
D 4 HOH A 88 429 88 HOH TIP . 
D 4 HOH A 89 430 89 HOH TIP . 
D 4 HOH A 90 431 90 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA PA9 . . . B 2 108.502 42.265 82.238 1 49.85 ? CA PA9 345 A 1 
HETATM 2 C CB PA9 . . . B 2 108.335 43.349 83.311 1 48.93 ? CB PA9 345 A 1 
HETATM 3 C CG PA9 . . . B 2 107.06 44.164 83.209 1 46.38 ? CG PA9 345 A 1 
HETATM 4 C CD PA9 . . . B 2 107.034 45.309 84.218 1 41.94 ? CD PA9 345 A 1 
HETATM 5 C C PA9 . . . B 2 108.712 42.889 80.847 1 48.95 ? C PA9 345 A 1 
HETATM 6 O O PA9 . . . B 2 107.705 43.142 80.157 1 48.01 ? O PA9 345 A 1 
HETATM 7 O OXT PA9 . . . B 2 109.878 43.119 80.46 1 47.76 ? OXT PA9 345 A 1 
HETATM 8 C C1 PA9 . . . B 2 110.33 40.495 82.033 1 54.35 ? C1 PA9 345 A 1 
HETATM 9 O O1 PA9 . . . B 2 109.765 39.593 81.415 1 57.64 ? O1 PA9 345 A 1 
HETATM 10 P P PA9 . . . B 2 105.985 42.536 88.124 1 35.64 ? P PA9 345 A 1 
HETATM 11 O O1P PA9 . . . B 2 106.363 41.664 86.861 1 39.42 ? O1P PA9 345 A 1 
HETATM 12 O O2P PA9 . . . B 2 104.394 42.58 88.36 1 35.86 ? O2P PA9 345 A 1 
HETATM 13 O O3P PA9 . . . B 2 106.748 41.959 89.432 1 39.45 ? O3P PA9 345 A 1 
HETATM 14 N N1 PA9 . . . B 2 109.655 41.458 82.657 1 52.1 ? N1 PA9 345 A 1 
HETATM 15 C C2 PA9 . . . B 2 111.845 40.617 82.165 1 54.24 ? C2 PA9 345 A 1 
HETATM 16 N N2 PA9 . . . B 2 107.175 44.868 85.608 1 40.6 ? N2 PA9 345 A 1 
HETATM 17 C C3 PA9 . . . B 2 106.164 44.674 86.453 1 38.1 ? C3 PA9 345 A 1 
HETATM 18 O O2 PA9 . . . B 2 104.982 44.854 86.151 1 36.28 ? O2 PA9 345 A 1 
HETATM 19 C C4 PA9 . . . B 2 106.543 44.225 87.846 1 37.36 ? C4 PA9 345 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#