data_3M4P # _model_server_result.job_id 86orFs0CEk0vvg1BJt-XWQ _model_server_result.datetime_utc '2024-11-22 18:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":521}' # _entry.id 3M4P # _exptl.entry_id 3M4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.45 _cell.angle_gamma 90 _cell.entry_id 3M4P _cell.length_a 99.426 _cell.length_b 58.816 _cell.length_c 181.259 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,W,X 1 1 C,D,N,O,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 V N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 3M4P _atom_sites.fract_transf_matrix[1][1] 0.010058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000079 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 4AD A 1 500 500 4AD 4AD . F 3 SO4 A 1 511 511 SO4 SO4 . G 3 SO4 A 1 512 512 SO4 SO4 . H 3 SO4 A 1 513 513 SO4 SO4 . I 4 GOL A 1 521 521 GOL GOL . J 2 4AD B 1 500 500 4AD 4AD . K 3 SO4 B 1 511 511 SO4 SO4 . L 3 SO4 B 1 512 512 SO4 SO4 . M 3 SO4 B 1 513 513 SO4 SO4 . N 2 4AD C 1 500 500 4AD 4AD . O 3 SO4 C 1 511 511 SO4 SO4 . P 3 SO4 C 1 512 512 SO4 SO4 . Q 3 SO4 C 1 513 513 SO4 SO4 . R 2 4AD D 1 500 500 4AD 4AD . S 3 SO4 D 1 511 511 SO4 SO4 . T 3 SO4 D 1 512 512 SO4 SO4 . U 3 SO4 D 1 513 513 SO4 SO4 . V 4 GOL D 1 521 521 GOL GOL . W 5 HOH A 1 531 531 HOH HOH . X 5 HOH B 1 531 531 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . V 4 1.133 28.713 35.864 1 80.65 ? C1 GOL 521 D 1 HETATM 2 O O1 GOL . . . V 4 2.152 28.327 34.951 1 80.84 ? O1 GOL 521 D 1 HETATM 3 C C2 GOL . . . V 4 0.084 27.623 36.112 1 79.14 ? C2 GOL 521 D 1 HETATM 4 O O2 GOL . . . V 4 -1.114 27.95 35.434 1 76.94 ? O2 GOL 521 D 1 HETATM 5 C C3 GOL . . . V 4 0.577 26.24 35.684 1 77.6 ? C3 GOL 521 D 1 HETATM 6 O O3 GOL . . . V 4 -0.324 25.25 36.126 1 75.67 ? O3 GOL 521 D 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #