data_3M50 # _model_server_result.job_id tUZaYlw00PUjkneuS9LZ7A _model_server_result.datetime_utc '2024-10-11 01:24:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":241}' # _entry.id 3M50 # _exptl.entry_id 3M50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.373 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2R,3R)-3-amino-2-hydroxy-4-phenylbutanoyl]-L-leucine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M50 _cell.length_a 97.62 _cell.length_b 97.62 _cell.length_c 217.03 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -97.62 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H24 N2 O4' _chem_comp.formula_weight 308.373 _chem_comp.id EBT _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2R,3R)-3-amino-2-hydroxy-4-phenylbutanoyl]-L-leucine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Epibestatin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O EBT doub 83 n n C CA EBT sing 84 n n C OXT EBT sing 85 n n N CA EBT sing 86 n n N CAM EBT sing 87 n n CA CB EBT sing 88 n n CB CG EBT sing 89 n n CG CD1 EBT sing 90 n n CG CD2 EBT sing 91 n n OAA CAK EBT sing 92 n n OAB CAM EBT doub 93 n n NAF CAJ EBT sing 94 n n CAJ CAK EBT sing 95 n n CAJ CAL EBT sing 96 n n CAK CAM EBT sing 97 n n CAL CAP EBT sing 98 n n CAP CAR EBT doub 99 n y CAP CAS EBT sing 100 n y CAR CAT EBT sing 101 n y CAS CAU EBT doub 102 n y CAT CAV EBT doub 103 n y CAU CAV EBT sing 104 n y N HN EBT sing 105 n n CA HA EBT sing 106 n n CB HB EBT sing 107 n n CB HBA EBT sing 108 n n CG HG EBT sing 109 n n OAA HOAA EBT sing 110 n n NAF HNAF EBT sing 111 n n NAF HNAA EBT sing 112 n n CAJ HAJ EBT sing 113 n n CAK HAK EBT sing 114 n n CAL HAL EBT sing 115 n n CAL HALA EBT sing 116 n n CAR HAR EBT sing 117 n n CAS HAS EBT sing 118 n n CAT HAT EBT sing 119 n n CAU HAU EBT sing 120 n n CAV HAV EBT sing 121 n n CD1 HD1 EBT sing 122 n n CD1 HD1A EBT sing 123 n n CD1 HD1B EBT sing 124 n n CD2 HD2 EBT sing 125 n n CD2 HD2A EBT sing 126 n n CD2 HD2B EBT sing 127 n n OXT HOXT EBT sing 128 n n # _atom_sites.entry_id 3M50 _atom_sites.fract_transf_matrix[1][1] 0.010244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EBT A 1 241 241 EBT EBT . D 4 HOH A 1 242 242 HOH HOH . D 4 HOH A 2 243 243 HOH HOH . D 4 HOH A 3 244 244 HOH HOH . D 4 HOH A 4 245 245 HOH HOH . D 4 HOH A 5 246 246 HOH HOH . D 4 HOH A 6 247 247 HOH HOH . D 4 HOH A 7 248 248 HOH HOH . D 4 HOH A 8 249 249 HOH HOH . D 4 HOH A 9 250 250 HOH HOH . D 4 HOH A 10 252 252 HOH HOH . D 4 HOH A 11 253 253 HOH HOH . D 4 HOH A 12 254 254 HOH HOH . D 4 HOH A 13 255 255 HOH HOH . D 4 HOH A 14 256 256 HOH HOH . D 4 HOH A 15 257 257 HOH HOH . D 4 HOH A 16 258 258 HOH HOH . D 4 HOH A 17 259 259 HOH HOH . D 4 HOH A 18 260 260 HOH HOH . D 4 HOH A 19 261 261 HOH HOH . D 4 HOH A 20 262 262 HOH HOH . D 4 HOH A 21 263 263 HOH HOH . D 4 HOH A 22 264 264 HOH HOH . D 4 HOH A 23 265 265 HOH HOH . D 4 HOH A 24 266 266 HOH HOH . D 4 HOH A 25 267 267 HOH HOH . D 4 HOH A 26 268 268 HOH HOH . D 4 HOH A 27 269 269 HOH HOH . D 4 HOH A 28 270 270 HOH HOH . D 4 HOH A 29 271 271 HOH HOH . D 4 HOH A 30 272 272 HOH HOH . D 4 HOH A 31 273 273 HOH HOH . D 4 HOH A 32 274 274 HOH HOH . D 4 HOH A 33 275 275 HOH HOH . D 4 HOH A 34 276 276 HOH HOH . D 4 HOH A 35 277 277 HOH HOH . D 4 HOH A 36 278 278 HOH HOH . D 4 HOH A 37 279 279 HOH HOH . D 4 HOH A 38 280 280 HOH HOH . D 4 HOH A 39 281 281 HOH HOH . D 4 HOH A 40 282 282 HOH HOH . D 4 HOH A 41 283 283 HOH HOH . D 4 HOH A 42 284 284 HOH HOH . D 4 HOH A 43 285 285 HOH HOH . D 4 HOH A 44 287 287 HOH HOH . D 4 HOH A 45 288 288 HOH HOH . D 4 HOH A 46 289 289 HOH HOH . D 4 HOH A 47 290 290 HOH HOH . D 4 HOH A 48 291 291 HOH HOH . D 4 HOH A 49 292 292 HOH HOH . D 4 HOH A 50 293 293 HOH HOH . D 4 HOH A 51 294 294 HOH HOH . D 4 HOH A 52 297 297 HOH HOH . D 4 HOH A 53 298 298 HOH HOH . D 4 HOH A 54 299 299 HOH HOH . D 4 HOH A 55 300 300 HOH HOH . D 4 HOH A 56 301 301 HOH HOH . D 4 HOH A 57 302 302 HOH HOH . D 4 HOH A 58 303 303 HOH HOH . D 4 HOH A 59 304 304 HOH HOH . D 4 HOH A 60 305 305 HOH HOH . D 4 HOH A 61 306 306 HOH HOH . D 4 HOH A 62 307 307 HOH HOH . D 4 HOH A 63 308 308 HOH HOH . D 4 HOH A 64 309 309 HOH HOH . D 4 HOH A 65 310 310 HOH HOH . D 4 HOH A 66 311 311 HOH HOH . D 4 HOH A 67 313 313 HOH HOH . D 4 HOH A 68 314 314 HOH HOH . D 4 HOH A 69 315 315 HOH HOH . D 4 HOH A 70 316 316 HOH HOH . D 4 HOH A 71 317 317 HOH HOH . D 4 HOH A 72 318 318 HOH HOH . D 4 HOH A 73 319 319 HOH HOH . D 4 HOH A 74 320 320 HOH HOH . D 4 HOH A 75 321 321 HOH HOH . D 4 HOH A 76 322 322 HOH HOH . D 4 HOH A 77 323 323 HOH HOH . D 4 HOH A 78 325 325 HOH HOH . D 4 HOH A 79 326 326 HOH HOH . D 4 HOH A 80 327 327 HOH HOH . D 4 HOH A 81 328 328 HOH HOH . D 4 HOH A 82 330 330 HOH HOH . D 4 HOH A 83 331 331 HOH HOH . D 4 HOH A 84 332 332 HOH HOH . D 4 HOH A 85 333 333 HOH HOH . D 4 HOH A 86 334 334 HOH HOH . E 4 HOH P 1 3 3 HOH HOH . E 4 HOH P 2 9 9 HOH HOH . E 4 HOH P 3 18 18 HOH HOH . E 4 HOH P 4 35 35 HOH HOH . E 4 HOH P 5 39 39 HOH HOH . E 4 HOH P 6 44 44 HOH HOH . E 4 HOH P 7 46 46 HOH HOH . E 4 HOH P 8 48 48 HOH HOH . E 4 HOH P 9 52 52 HOH HOH . E 4 HOH P 10 60 60 HOH HOH . E 4 HOH P 11 62 62 HOH HOH . E 4 HOH P 12 83 83 HOH HOH . E 4 HOH P 13 85 85 HOH HOH . E 4 HOH P 14 86 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C EBT . . . C 3 -1.356 -33.601 8.595 1 109.51 ? C EBT 241 A 1 HETATM 2 N N EBT . . . C 3 -0.715 -35.97 9.11 1 108.76 ? N EBT 241 A 1 HETATM 3 O O EBT . . . C 3 -1.071 -33.918 7.416 1 109.73 ? O EBT 241 A 1 HETATM 4 C CA EBT . . . C 3 -1.071 -34.642 9.691 1 109.32 ? CA EBT 241 A 1 HETATM 5 C CB EBT . . . C 3 0.015 -34.084 10.637 1 109.12 ? CB EBT 241 A 1 HETATM 6 C CG EBT . . . C 3 -0.606 -32.893 11.409 1 109.67 ? CG EBT 241 A 1 HETATM 7 O OAA EBT . . . C 3 -2.295 -39.078 8.13 1 105.8 ? OAA EBT 241 A 1 HETATM 8 O OAB EBT . . . C 3 -2.841 -36.791 9.109 1 107.75 ? OAB EBT 241 A 1 HETATM 9 N NAF EBT . . . C 3 -0.424 -38.578 10.641 1 104.84 ? NAF EBT 241 A 1 HETATM 10 C CAJ EBT . . . C 3 -0.121 -38.919 9.241 1 105.61 ? CAJ EBT 241 A 1 HETATM 11 C CAK EBT . . . C 3 -1.144 -38.242 8.3 1 107.45 ? CAK EBT 241 A 1 HETATM 12 C CAL EBT . . . C 3 1.322 -38.488 8.923 1 104.63 ? CAL EBT 241 A 1 HETATM 13 C CAM EBT . . . C 3 -1.64 -36.919 8.88 1 108.38 ? CAM EBT 241 A 1 HETATM 14 C CAP EBT . . . C 3 2.216 -39.673 8.509 1 103.83 ? CAP EBT 241 A 1 HETATM 15 C CAR EBT . . . C 3 2.117 -40.218 7.23 1 102.57 ? CAR EBT 241 A 1 HETATM 16 C CAS EBT . . . C 3 3.135 -40.198 9.41 1 102.8 ? CAS EBT 241 A 1 HETATM 17 C CAT EBT . . . C 3 2.922 -41.28 6.842 1 101.9 ? CAT EBT 241 A 1 HETATM 18 C CAU EBT . . . C 3 3.938 -41.262 9.019 1 102.81 ? CAU EBT 241 A 1 HETATM 19 C CAV EBT . . . C 3 3.838 -41.803 7.739 1 102.49 ? CAV EBT 241 A 1 HETATM 20 C CD1 EBT . . . C 3 -0.554 -33.078 12.945 1 108.45 ? CD1 EBT 241 A 1 HETATM 21 C CD2 EBT . . . C 3 0.002 -31.551 10.96 1 109.41 ? CD2 EBT 241 A 1 HETATM 22 O OXT EBT . . . C 3 -1.837 -32.501 8.969 1 109.62 ? OXT EBT 241 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #