data_3M51
#
_model_server_result.job_id            X2ey0uklyZWSMq9jDgU2Pg 
_model_server_result.datetime_utc      '2025-02-27 13:47:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m51 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":241}' 
#
_entry.id    3M51 
#
_exptl.entry_id    3M51 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              460.392 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-hydroxy-5-[(5S)-3-hydroxy-5-(4-nitrophenyl)-2-oxo-4-(phenylcarbonyl)-2,5-dihydro-1H-pyrrol-1-yl]benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3M51 
_cell.length_a            97.44 
_cell.length_b            97.44 
_cell.length_c            214.27 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M51 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -97.44 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H16 N2 O8' 
_chem_comp.formula_weight    460.392 
_chem_comp.id                YR1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-hydroxy-5-[(5S)-3-hydroxy-5-(4-nitrophenyl)-2-oxo-4-(phenylcarbonyl)-2,5-dihydro-1H-pyrrol-1-yl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAU YR1 doub 376 n n 
OAB CAW YR1 doub 377 n n 
OAC CAX YR1 doub 378 n n 
OAD NBH YR1 doub 379 n n 
OAE CAU YR1 sing 380 n n 
OAF CAV YR1 sing 381 n n 
OAG CAZ YR1 sing 382 n n 
OAH NBH YR1 sing 383 n n 
CAI CAJ YR1 doub 384 n y 
CAI CAK YR1 sing 385 n y 
CAJ CAL YR1 sing 386 n y 
CAK CAM YR1 doub 387 n y 
CAL CBA YR1 doub 388 n y 
CAM CBA YR1 sing 389 n y 
CAN CAQ YR1 doub 390 n y 
CAN CAZ YR1 sing 391 n y 
CAO CAR YR1 doub 392 n y 
CAO CBB YR1 sing 393 n y 
CAP CAS YR1 sing 394 n y 
CAP CBB YR1 doub 395 n y 
CAQ CBD YR1 sing 396 n y 
CAR CBE YR1 sing 397 n y 
CAS CBE YR1 doub 398 n y 
CAT CBC YR1 sing 399 n y 
CAT CBD YR1 doub 400 n y 
CAU CBC YR1 sing 401 n n 
CAV CAX YR1 sing 402 n n 
CAV CAY YR1 doub 403 n n 
CAW CAY YR1 sing 404 n n 
CAW CBA YR1 sing 405 n n 
CAX NBG YR1 sing 406 n n 
CAY CBF YR1 sing 407 n n 
CAZ CBC YR1 doub 408 n y 
CBB CBF YR1 sing 409 n n 
CBD NBG YR1 sing 410 n n 
CBE NBH YR1 sing 411 n n 
CBF NBG YR1 sing 412 n n 
OAE HOAE YR1 sing 413 n n 
OAF HOAF YR1 sing 414 n n 
OAG HOAG YR1 sing 415 n n 
CAI HAI YR1 sing 416 n n 
CAJ HAJ YR1 sing 417 n n 
CAK HAK YR1 sing 418 n n 
CAL HAL YR1 sing 419 n n 
CAM HAM YR1 sing 420 n n 
CAN HAN YR1 sing 421 n n 
CAO HAO YR1 sing 422 n n 
CAP HAP YR1 sing 423 n n 
CAQ HAQ YR1 sing 424 n n 
CAR HAR YR1 sing 425 n n 
CAS HAS YR1 sing 426 n n 
CAT HAT YR1 sing 427 n n 
CBF HBF YR1 sing 428 n n 
#
_atom_sites.entry_id                     3M51 
_atom_sites.fract_transf_matrix[1][1]    0.010263 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 YR1 A 1 241 1 YR1 YR1 . 
D 4 HOH A 1 242 1 HOH HOH . 
D 4 HOH A 2 243 6 HOH HOH . 
D 4 HOH A 3 244 26 HOH HOH . 
D 4 HOH A 4 245 67 HOH HOH . 
D 4 HOH A 5 246 117 HOH HOH . 
D 4 HOH A 6 247 122 HOH HOH . 
D 4 HOH A 7 248 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA YR1 . . . C 3 -0.776 -32.072 11.076 1 82.42 ? OAA YR1 241 A 1 
HETATM 2 O OAB YR1 . . . C 3 -3.609 -24.303 11.595 1 81.24 ? OAB YR1 241 A 1 
HETATM 3 O OAC YR1 . . . C 3 -6.46 -28.726 9.064 1 81.91 ? OAC YR1 241 A 1 
HETATM 4 O OAD YR1 . . . C 3 1.513 -28.663 8.324 1 82.11 ? OAD YR1 241 A 1 
HETATM 5 O OAE YR1 . . . C 3 -1.608 -32.586 9.087 1 82.16 ? OAE YR1 241 A 1 
HETATM 6 O OAF YR1 . . . C 3 -6.529 -25.827 8.874 1 81.98 ? OAF YR1 241 A 1 
HETATM 7 O OAG YR1 . . . C 3 -3.758 -33.71 11.49 1 81.97 ? OAG YR1 241 A 1 
HETATM 8 O OAH YR1 . . . C 3 1.832 -26.276 8.885 1 82.53 ? OAH YR1 241 A 1 
HETATM 9 C CAI YR1 . . . C 3 -6.527 -21.761 8.352 1 80.74 ? CAI YR1 241 A 1 
HETATM 10 C CAJ YR1 . . . C 3 -5.802 -22.797 7.771 1 80.34 ? CAJ YR1 241 A 1 
HETATM 11 C CAK YR1 . . . C 3 -6.596 -21.649 9.74 1 80.8 ? CAK YR1 241 A 1 
HETATM 12 C CAL YR1 . . . C 3 -5.15 -23.713 8.584 1 80.05 ? CAL YR1 241 A 1 
HETATM 13 C CAM YR1 . . . C 3 -5.94 -22.569 10.555 1 80.47 ? CAM YR1 241 A 1 
HETATM 14 C CAN YR1 . . . C 3 -5.26 -31.865 11.653 1 82 ? CAN YR1 241 A 1 
HETATM 15 C CAO YR1 . . . C 3 -2.407 -28.299 9.634 1 81.41 ? CAO YR1 241 A 1 
HETATM 16 C CAP YR1 . . . C 3 -1.743 -26.397 10.963 1 81.38 ? CAP YR1 241 A 1 
HETATM 17 C CAQ YR1 . . . C 3 -5.548 -30.521 11.438 1 81.72 ? CAQ YR1 241 A 1 
HETATM 18 C CAR YR1 . . . C 3 -1.143 -28.34 9.061 1 81.54 ? CAR YR1 241 A 1 
HETATM 19 C CAS YR1 . . . C 3 -0.478 -26.436 10.389 1 81.41 ? CAS YR1 241 A 1 
HETATM 20 C CAT YR1 . . . C 3 -3.365 -30.224 10.461 1 81.53 ? CAT YR1 241 A 1 
HETATM 21 C CAU YR1 . . . C 3 -1.712 -32.122 10.246 1 82.2 ? CAU YR1 241 A 1 
HETATM 22 C CAV YR1 . . . C 3 -5.732 -26.598 9.665 1 81.48 ? CAV YR1 241 A 1 
HETATM 23 C CAW YR1 . . . C 3 -4.479 -24.642 10.796 1 80.75 ? CAW YR1 241 A 1 
HETATM 24 C CAX YR1 . . . C 3 -5.729 -27.988 9.722 1 81.54 ? CAX YR1 241 A 1 
HETATM 25 C CAY YR1 . . . C 3 -4.798 -26.116 10.562 1 81.1 ? CAY YR1 241 A 1 
HETATM 26 C CAZ YR1 . . . C 3 -4.027 -32.391 11.273 1 82.01 ? CAZ YR1 241 A 1 
HETATM 27 C CBA YR1 . . . C 3 -5.225 -23.604 9.969 1 80.33 ? CBA YR1 241 A 1 
HETATM 28 C CBB YR1 . . . C 3 -2.702 -27.332 10.59 1 81.34 ? CBB YR1 241 A 1 
HETATM 29 C CBC YR1 . . . C 3 -3.077 -31.565 10.674 1 81.9 ? CBC YR1 241 A 1 
HETATM 30 C CBD YR1 . . . C 3 -4.594 -29.702 10.847 1 81.55 ? CBD YR1 241 A 1 
HETATM 31 C CBE YR1 . . . C 3 -0.182 -27.409 9.439 1 81.7 ? CBE YR1 241 A 1 
HETATM 32 C CBF YR1 . . . C 3 -4.096 -27.296 11.2 1 81.25 ? CBF YR1 241 A 1 
HETATM 33 N NBG YR1 . . . C 3 -4.847 -28.417 10.622 1 81.44 ? NBG YR1 241 A 1 
HETATM 34 N NBH YR1 . . . C 3 1.027 -27.449 8.892 1 82.05 ? NBH YR1 241 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           1123 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#