data_3M52 # _model_server_result.job_id cdqF4nfwr0T7Vql4ktUIEw _model_server_result.datetime_utc '2025-06-30 05:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":121}' # _entry.id 3M52 # _exptl.entry_id 3M52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M52 _cell.length_a 33.023 _cell.length_b 80.935 _cell.length_c 95.713 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,C,D,E,F,G,H,K 2 1 B,I,J,L 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -33.023 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 8 A HIS 6 1_555 C ZN ZN . A ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc2 A NE2 HIS 36 A HIS 34 1_555 D ZN ZN . A ZN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 A OD2 ASP 57 A ASP 55 1_555 F ZN ZN . A ZN 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 A OD2 ASP 60 A ASP 58 1_555 F ZN ZN . A ZN 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc5 A OD2 ASP 105 A ASP 103 1_555 I ZN ZN . B ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc6 C ZN ZN . A ZN 116 1_555 B OD2 ASP 105 B ASP 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc7 D ZN ZN . A ZN 117 1_555 K O HOH . A HOH 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc8 D ZN ZN . A ZN 117 1_555 K O HOH . A HOH 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 G OXT ACT . A ACT 120 1_555 I ZN ZN . B ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc10 G O ACT . A ACT 120 1_555 I ZN ZN . B ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc11 B ND1 HIS 8 B HIS 6 1_555 I ZN ZN . B ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc12 B ND1 HIS 11 B HIS 9 1_555 I ZN ZN . B ZN 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc13 B NE2 HIS 36 B HIS 34 1_555 J ZN ZN . B ZN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3M52 _atom_sites.fract_transf_matrix[1][1] 0.030282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 116 1 ZN ZN . D 2 ZN A 1 117 2 ZN ZN . E 2 ZN A 1 118 5 ZN ZN . F 2 ZN A 1 119 6 ZN ZN . G 3 ACT A 1 120 7 ACT ACT . H 3 ACT A 1 121 8 ACT ACT . I 2 ZN B 1 116 3 ZN ZN . J 2 ZN B 1 117 4 ZN ZN . K 4 HOH A 1 122 9 HOH HOH . K 4 HOH A 2 123 11 HOH HOH . K 4 HOH A 3 124 13 HOH HOH . K 4 HOH A 4 125 14 HOH HOH . K 4 HOH A 5 126 53 HOH HOH . K 4 HOH A 6 127 25 HOH HOH . K 4 HOH A 7 128 28 HOH HOH . K 4 HOH A 8 129 29 HOH HOH . K 4 HOH A 9 130 30 HOH HOH . K 4 HOH A 10 131 31 HOH HOH . K 4 HOH A 11 132 32 HOH HOH . K 4 HOH A 12 133 33 HOH HOH . K 4 HOH A 13 134 34 HOH HOH . K 4 HOH A 14 135 37 HOH HOH . K 4 HOH A 15 136 38 HOH HOH . K 4 HOH A 16 137 40 HOH HOH . K 4 HOH A 17 138 41 HOH HOH . K 4 HOH A 18 139 43 HOH HOH . K 4 HOH A 19 140 46 HOH HOH . K 4 HOH A 20 141 47 HOH HOH . K 4 HOH A 21 142 52 HOH HOH . L 4 HOH B 1 118 10 HOH HOH . L 4 HOH B 2 119 12 HOH HOH . L 4 HOH B 3 120 15 HOH HOH . L 4 HOH B 4 121 16 HOH HOH . L 4 HOH B 5 122 17 HOH HOH . L 4 HOH B 6 123 18 HOH HOH . L 4 HOH B 7 124 19 HOH HOH . L 4 HOH B 8 125 20 HOH HOH . L 4 HOH B 9 126 21 HOH HOH . L 4 HOH B 10 127 22 HOH HOH . L 4 HOH B 11 128 24 HOH HOH . L 4 HOH B 12 129 26 HOH HOH . L 4 HOH B 13 130 27 HOH HOH . L 4 HOH B 14 131 35 HOH HOH . L 4 HOH B 15 132 36 HOH HOH . L 4 HOH B 16 133 39 HOH HOH . L 4 HOH B 17 134 42 HOH HOH . L 4 HOH B 18 135 44 HOH HOH . L 4 HOH B 19 136 45 HOH HOH . L 4 HOH B 20 137 48 HOH HOH . L 4 HOH B 21 138 49 HOH HOH . L 4 HOH B 22 139 50 HOH HOH . L 4 HOH B 23 140 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . H 3 18.169 82.209 28.919 1 35.74 ? C ACT 121 A 1 HETATM 2 O O ACT . . . H 3 18.344 81.842 27.732 1 35.46 ? O ACT 121 A 1 HETATM 3 O OXT ACT . . . H 3 18.608 81.425 29.784 1 35.96 ? OXT ACT 121 A 1 HETATM 4 C CH3 ACT . . . H 3 17.48 83.491 29.306 1 35.44 ? CH3 ACT 121 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 1310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #