data_3M57
#
_model_server_result.job_id            6rWQQUmh322OzbyyoXUZyQ 
_model_server_result.datetime_utc      '2025-01-02 20:45:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    3M57 
#
_exptl.entry_id    3M57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3M57 
_cell.length_a            83.636 
_cell.length_b            83.636 
_cell.length_c            96.053 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            ACE 
_struct_conn.ptnr1_label_seq_id             1 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             ACE 
_struct_conn.ptnr1_auth_seq_id              185 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             2 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              186 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.338 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     3M57 
_atom_sites.fract_transf_matrix[1][1]    0.011957 
_atom_sites.fract_transf_matrix[1][2]    0.006903 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013806 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SAH A 1 1 1 SAH SAH . 
D 4 GOL A 1 2 2 GOL GOL . 
E 5 HOH A 1 3 3 HOH HOH . 
E 5 HOH A 2 4 4 HOH HOH . 
E 5 HOH A 3 5 5 HOH HOH . 
E 5 HOH A 4 6 6 HOH HOH . 
E 5 HOH A 5 7 7 HOH HOH . 
E 5 HOH A 6 8 8 HOH HOH . 
E 5 HOH A 7 9 9 HOH HOH . 
E 5 HOH A 8 10 10 HOH HOH . 
E 5 HOH A 9 11 11 HOH HOH . 
E 5 HOH A 10 12 12 HOH HOH . 
E 5 HOH A 11 13 13 HOH HOH . 
E 5 HOH A 12 14 14 HOH HOH . 
E 5 HOH A 13 15 15 HOH HOH . 
E 5 HOH A 14 16 16 HOH HOH . 
E 5 HOH A 15 17 17 HOH HOH . 
E 5 HOH A 16 18 18 HOH HOH . 
E 5 HOH A 17 19 19 HOH HOH . 
E 5 HOH A 18 20 20 HOH HOH . 
E 5 HOH A 19 21 21 HOH HOH . 
E 5 HOH A 20 22 22 HOH HOH . 
E 5 HOH A 21 23 23 HOH HOH . 
E 5 HOH A 22 24 24 HOH HOH . 
E 5 HOH A 23 25 25 HOH HOH . 
E 5 HOH A 24 26 26 HOH HOH . 
E 5 HOH A 25 27 27 HOH HOH . 
E 5 HOH A 26 28 28 HOH HOH . 
E 5 HOH A 27 29 29 HOH HOH . 
E 5 HOH A 28 30 30 HOH HOH . 
E 5 HOH A 29 31 31 HOH HOH . 
E 5 HOH A 30 32 32 HOH HOH . 
E 5 HOH A 31 33 33 HOH HOH . 
E 5 HOH A 32 34 34 HOH HOH . 
E 5 HOH A 33 35 35 HOH HOH . 
E 5 HOH A 34 36 36 HOH HOH . 
E 5 HOH A 35 38 38 HOH HOH . 
E 5 HOH A 36 39 39 HOH HOH . 
E 5 HOH A 37 40 40 HOH HOH . 
E 5 HOH A 38 41 41 HOH HOH . 
E 5 HOH A 39 42 42 HOH HOH . 
E 5 HOH A 40 43 43 HOH HOH . 
E 5 HOH A 41 44 44 HOH HOH . 
E 5 HOH A 42 45 45 HOH HOH . 
E 5 HOH A 43 46 46 HOH HOH . 
E 5 HOH A 44 47 47 HOH HOH . 
E 5 HOH A 45 48 48 HOH HOH . 
E 5 HOH A 46 49 49 HOH HOH . 
E 5 HOH A 47 50 50 HOH HOH . 
E 5 HOH A 48 51 51 HOH HOH . 
E 5 HOH A 49 52 52 HOH HOH . 
E 5 HOH A 50 53 53 HOH HOH . 
E 5 HOH A 51 54 54 HOH HOH . 
E 5 HOH A 52 55 55 HOH HOH . 
E 5 HOH A 53 56 56 HOH HOH . 
E 5 HOH A 54 57 57 HOH HOH . 
E 5 HOH A 55 58 58 HOH HOH . 
E 5 HOH A 56 59 59 HOH HOH . 
E 5 HOH A 57 60 60 HOH HOH . 
E 5 HOH A 58 61 61 HOH HOH . 
E 5 HOH A 59 63 63 HOH HOH . 
E 5 HOH A 60 64 64 HOH HOH . 
E 5 HOH A 61 65 65 HOH HOH . 
E 5 HOH A 62 67 67 HOH HOH . 
E 5 HOH A 63 68 68 HOH HOH . 
E 5 HOH A 64 69 69 HOH HOH . 
E 5 HOH A 65 70 70 HOH HOH . 
E 5 HOH A 66 71 71 HOH HOH . 
E 5 HOH A 67 72 72 HOH HOH . 
E 5 HOH A 68 73 73 HOH HOH . 
E 5 HOH A 69 74 74 HOH HOH . 
E 5 HOH A 70 75 75 HOH HOH . 
E 5 HOH A 71 76 76 HOH HOH . 
E 5 HOH A 72 77 77 HOH HOH . 
E 5 HOH A 73 79 79 HOH HOH . 
E 5 HOH A 74 80 80 HOH HOH . 
E 5 HOH A 75 81 81 HOH HOH . 
E 5 HOH A 76 82 82 HOH HOH . 
E 5 HOH A 77 83 83 HOH HOH . 
E 5 HOH A 78 85 85 HOH HOH . 
E 5 HOH A 79 86 86 HOH HOH . 
E 5 HOH A 80 87 87 HOH HOH . 
E 5 HOH A 81 88 88 HOH HOH . 
E 5 HOH A 82 89 89 HOH HOH . 
E 5 HOH A 83 90 90 HOH HOH . 
E 5 HOH A 84 92 92 HOH HOH . 
E 5 HOH A 85 93 93 HOH HOH . 
E 5 HOH A 86 94 94 HOH HOH . 
E 5 HOH A 87 95 95 HOH HOH . 
E 5 HOH A 88 96 96 HOH HOH . 
E 5 HOH A 89 97 97 HOH HOH . 
E 5 HOH A 90 98 98 HOH HOH . 
E 5 HOH A 91 99 99 HOH HOH . 
E 5 HOH A 92 100 100 HOH HOH . 
E 5 HOH A 93 101 101 HOH HOH . 
E 5 HOH A 94 102 102 HOH HOH . 
E 5 HOH A 95 103 103 HOH HOH . 
E 5 HOH A 96 105 105 HOH HOH . 
E 5 HOH A 97 367 1 HOH HOH . 
E 5 HOH A 98 368 2 HOH HOH . 
E 5 HOH A 99 369 107 HOH HOH . 
E 5 HOH A 100 370 108 HOH HOH . 
E 5 HOH A 101 371 109 HOH HOH . 
E 5 HOH A 102 372 110 HOH HOH . 
E 5 HOH A 103 373 111 HOH HOH . 
E 5 HOH A 104 374 112 HOH HOH . 
E 5 HOH A 105 375 114 HOH HOH . 
E 5 HOH A 106 376 115 HOH HOH . 
E 5 HOH A 107 377 116 HOH HOH . 
E 5 HOH A 108 378 118 HOH HOH . 
E 5 HOH A 109 379 119 HOH HOH . 
E 5 HOH A 110 380 120 HOH HOH . 
E 5 HOH A 111 381 121 HOH HOH . 
E 5 HOH A 112 382 122 HOH HOH . 
E 5 HOH A 113 383 123 HOH HOH . 
E 5 HOH A 114 384 124 HOH HOH . 
E 5 HOH A 115 385 125 HOH HOH . 
E 5 HOH A 116 386 126 HOH HOH . 
E 5 HOH A 117 387 127 HOH HOH . 
E 5 HOH A 118 388 128 HOH HOH . 
E 5 HOH A 119 389 129 HOH HOH . 
E 5 HOH A 120 390 130 HOH HOH . 
E 5 HOH A 121 391 131 HOH HOH . 
E 5 HOH A 122 392 132 HOH HOH . 
E 5 HOH A 123 393 133 HOH HOH . 
E 5 HOH A 124 394 135 HOH HOH . 
E 5 HOH A 125 395 136 HOH HOH . 
E 5 HOH A 126 396 137 HOH HOH . 
E 5 HOH A 127 397 138 HOH HOH . 
E 5 HOH A 128 398 139 HOH HOH . 
E 5 HOH A 129 399 140 HOH HOH . 
E 5 HOH A 130 400 141 HOH HOH . 
E 5 HOH A 131 401 142 HOH HOH . 
E 5 HOH A 132 402 143 HOH HOH . 
E 5 HOH A 133 403 144 HOH HOH . 
E 5 HOH A 134 404 145 HOH HOH . 
E 5 HOH A 135 405 146 HOH HOH . 
E 5 HOH A 136 406 148 HOH HOH . 
E 5 HOH A 137 407 149 HOH HOH . 
E 5 HOH A 138 408 150 HOH HOH . 
E 5 HOH A 139 409 151 HOH HOH . 
E 5 HOH A 140 410 152 HOH HOH . 
E 5 HOH A 141 411 153 HOH HOH . 
E 5 HOH A 142 412 155 HOH HOH . 
E 5 HOH A 143 413 156 HOH HOH . 
E 5 HOH A 144 414 157 HOH HOH . 
E 5 HOH A 145 415 159 HOH HOH . 
E 5 HOH A 146 416 160 HOH HOH . 
E 5 HOH A 147 417 161 HOH HOH . 
E 5 HOH A 148 418 162 HOH HOH . 
E 5 HOH A 149 419 163 HOH HOH . 
E 5 HOH A 150 420 164 HOH HOH . 
E 5 HOH A 151 421 165 HOH HOH . 
E 5 HOH A 152 422 166 HOH HOH . 
E 5 HOH A 153 423 167 HOH HOH . 
E 5 HOH A 154 424 168 HOH HOH . 
E 5 HOH A 155 425 169 HOH HOH . 
E 5 HOH A 156 426 172 HOH HOH . 
E 5 HOH A 157 427 173 HOH HOH . 
E 5 HOH A 158 428 174 HOH HOH . 
E 5 HOH A 159 429 176 HOH HOH . 
E 5 HOH A 160 430 177 HOH HOH . 
E 5 HOH A 161 431 178 HOH HOH . 
E 5 HOH A 162 432 179 HOH HOH . 
E 5 HOH A 163 433 180 HOH HOH . 
E 5 HOH A 164 434 182 HOH HOH . 
E 5 HOH A 165 435 183 HOH HOH . 
E 5 HOH A 166 436 184 HOH HOH . 
E 5 HOH A 167 437 185 HOH HOH . 
E 5 HOH A 168 438 186 HOH HOH . 
E 5 HOH A 169 439 189 HOH HOH . 
E 5 HOH A 170 440 190 HOH HOH . 
E 5 HOH A 171 441 191 HOH HOH . 
E 5 HOH A 172 442 192 HOH HOH . 
E 5 HOH A 173 443 193 HOH HOH . 
E 5 HOH A 174 444 194 HOH HOH . 
E 5 HOH A 175 445 195 HOH HOH . 
E 5 HOH A 176 446 196 HOH HOH . 
E 5 HOH A 177 447 197 HOH HOH . 
E 5 HOH A 178 448 198 HOH HOH . 
E 5 HOH A 179 449 199 HOH HOH . 
E 5 HOH A 180 450 201 HOH HOH . 
E 5 HOH A 181 451 202 HOH HOH . 
E 5 HOH A 182 452 203 HOH HOH . 
E 5 HOH A 183 453 204 HOH HOH . 
E 5 HOH A 184 454 205 HOH HOH . 
E 5 HOH A 185 455 206 HOH HOH . 
E 5 HOH A 186 456 207 HOH HOH . 
E 5 HOH A 187 457 208 HOH HOH . 
E 5 HOH A 188 458 210 HOH HOH . 
E 5 HOH A 189 459 211 HOH HOH . 
E 5 HOH A 190 460 212 HOH HOH . 
E 5 HOH A 191 461 213 HOH HOH . 
E 5 HOH A 192 462 214 HOH HOH . 
E 5 HOH A 193 463 216 HOH HOH . 
E 5 HOH A 194 464 217 HOH HOH . 
E 5 HOH A 195 465 218 HOH HOH . 
E 5 HOH A 196 466 219 HOH HOH . 
E 5 HOH A 197 467 220 HOH HOH . 
E 5 HOH A 198 468 222 HOH HOH . 
E 5 HOH A 199 469 223 HOH HOH . 
E 5 HOH A 200 470 224 HOH HOH . 
E 5 HOH A 201 471 225 HOH HOH . 
E 5 HOH A 202 472 226 HOH HOH . 
E 5 HOH A 203 473 227 HOH HOH . 
E 5 HOH A 204 474 230 HOH HOH . 
E 5 HOH A 205 475 232 HOH HOH . 
E 5 HOH A 206 476 233 HOH HOH . 
E 5 HOH A 207 477 234 HOH HOH . 
E 5 HOH A 208 478 235 HOH HOH . 
E 5 HOH A 209 479 236 HOH HOH . 
E 5 HOH A 210 480 237 HOH HOH . 
E 5 HOH A 211 481 239 HOH HOH . 
E 5 HOH A 212 482 240 HOH HOH . 
E 5 HOH A 213 483 242 HOH HOH . 
E 5 HOH A 214 484 244 HOH HOH . 
E 5 HOH A 215 485 245 HOH HOH . 
E 5 HOH A 216 486 246 HOH HOH . 
E 5 HOH A 217 487 247 HOH HOH . 
E 5 HOH A 218 488 248 HOH HOH . 
E 5 HOH A 219 489 249 HOH HOH . 
E 5 HOH A 220 490 252 HOH HOH . 
E 5 HOH A 221 491 253 HOH HOH . 
E 5 HOH A 222 492 254 HOH HOH . 
E 5 HOH A 223 493 255 HOH HOH . 
E 5 HOH A 224 494 256 HOH HOH . 
E 5 HOH A 225 495 261 HOH HOH . 
E 5 HOH A 226 496 262 HOH HOH . 
E 5 HOH A 227 497 263 HOH HOH . 
E 5 HOH A 228 498 264 HOH HOH . 
E 5 HOH A 229 499 265 HOH HOH . 
E 5 HOH A 230 500 267 HOH HOH . 
E 5 HOH A 231 501 266 HOH HOH . 
E 5 HOH A 232 502 258 HOH HOH . 
E 5 HOH A 233 503 257 HOH HOH . 
E 5 HOH A 234 504 259 HOH HOH . 
F 5 HOH B 1 62 62 HOH HOH . 
F 5 HOH B 2 147 147 HOH HOH . 
F 5 HOH B 3 170 170 HOH HOH . 
F 5 HOH B 4 171 171 HOH HOH . 
F 5 HOH B 5 231 231 HOH HOH . 
F 5 HOH B 6 243 243 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 57.504 -35.057 24.328 1 68.98 ? C1 GOL 2 A 1 
HETATM 2 O O1 GOL . . . D 4 58.171 -33.843 24.589 1 69.73 ? O1 GOL 2 A 1 
HETATM 3 C C2 GOL . . . D 4 58.092 -36.107 25.246 1 68.8 ? C2 GOL 2 A 1 
HETATM 4 O O2 GOL . . . D 4 59.478 -35.86 25.288 1 69.65 ? O2 GOL 2 A 1 
HETATM 5 C C3 GOL . . . D 4 57.828 -37.486 24.66 1 68.71 ? C3 GOL 2 A 1 
HETATM 6 O O3 GOL . . . D 4 57.044 -38.254 25.544 1 69.94 ? O3 GOL 2 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           403 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#