data_3M59
#
_model_server_result.job_id            etkT_EeJbG7fi88rF067DA 
_model_server_result.datetime_utc      '2024-12-21 14:19:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":4}' 
#
_entry.id    3M59 
#
_exptl.entry_id    3M59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3M59 
_cell.length_a            83.497 
_cell.length_b            83.497 
_cell.length_c            95.718 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 B ACE 185 1_555 B N SER 2 B SER 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 B C SER 4 B SER 188 1_555 B N MLY 5 B MLY 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 B C MLY 5 B MLY 189 1_555 B N ASP 6 B ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     3M59 
_atom_sites.fract_transf_matrix[1][1]    0.011976 
_atom_sites.fract_transf_matrix[1][2]    0.006915 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013829 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SAH A 1 1 1 SAH SAH . 
D 4 CO A 1 367 1 CO CO . 
E 4 CO A 1 2 2 CO CO . 
F 4 CO A 1 3 3 CO CO . 
G 5 GOL A 1 368 2 GOL GOL . 
H 5 GOL A 1 369 3 GOL GOL . 
I 5 GOL A 1 4 4 GOL GOL . 
J 5 GOL A 1 6 6 GOL GOL . 
K 6 HOH A 1 5 5 HOH HOH . 
K 6 HOH A 2 7 7 HOH HOH . 
K 6 HOH A 3 8 8 HOH HOH . 
K 6 HOH A 4 9 9 HOH HOH . 
K 6 HOH A 5 10 10 HOH HOH . 
K 6 HOH A 6 11 11 HOH HOH . 
K 6 HOH A 7 12 12 HOH HOH . 
K 6 HOH A 8 13 13 HOH HOH . 
K 6 HOH A 9 14 14 HOH HOH . 
K 6 HOH A 10 15 15 HOH HOH . 
K 6 HOH A 11 16 16 HOH HOH . 
K 6 HOH A 12 17 17 HOH HOH . 
K 6 HOH A 13 18 18 HOH HOH . 
K 6 HOH A 14 19 19 HOH HOH . 
K 6 HOH A 15 20 20 HOH HOH . 
K 6 HOH A 16 21 21 HOH HOH . 
K 6 HOH A 17 22 22 HOH HOH . 
K 6 HOH A 18 23 23 HOH HOH . 
K 6 HOH A 19 24 24 HOH HOH . 
K 6 HOH A 20 25 25 HOH HOH . 
K 6 HOH A 21 26 26 HOH HOH . 
K 6 HOH A 22 27 27 HOH HOH . 
K 6 HOH A 23 28 28 HOH HOH . 
K 6 HOH A 24 29 29 HOH HOH . 
K 6 HOH A 25 30 30 HOH HOH . 
K 6 HOH A 26 31 31 HOH HOH . 
K 6 HOH A 27 32 32 HOH HOH . 
K 6 HOH A 28 33 33 HOH HOH . 
K 6 HOH A 29 34 34 HOH HOH . 
K 6 HOH A 30 35 35 HOH HOH . 
K 6 HOH A 31 36 36 HOH HOH . 
K 6 HOH A 32 37 37 HOH HOH . 
K 6 HOH A 33 38 38 HOH HOH . 
K 6 HOH A 34 40 40 HOH HOH . 
K 6 HOH A 35 41 41 HOH HOH . 
K 6 HOH A 36 42 42 HOH HOH . 
K 6 HOH A 37 43 43 HOH HOH . 
K 6 HOH A 38 44 44 HOH HOH . 
K 6 HOH A 39 45 45 HOH HOH . 
K 6 HOH A 40 46 46 HOH HOH . 
K 6 HOH A 41 47 47 HOH HOH . 
K 6 HOH A 42 48 48 HOH HOH . 
K 6 HOH A 43 49 49 HOH HOH . 
K 6 HOH A 44 50 50 HOH HOH . 
K 6 HOH A 45 51 51 HOH HOH . 
K 6 HOH A 46 52 52 HOH HOH . 
K 6 HOH A 47 53 53 HOH HOH . 
K 6 HOH A 48 54 54 HOH HOH . 
K 6 HOH A 49 55 55 HOH HOH . 
K 6 HOH A 50 56 56 HOH HOH . 
K 6 HOH A 51 57 57 HOH HOH . 
K 6 HOH A 52 58 58 HOH HOH . 
K 6 HOH A 53 59 59 HOH HOH . 
K 6 HOH A 54 60 60 HOH HOH . 
K 6 HOH A 55 61 61 HOH HOH . 
K 6 HOH A 56 64 64 HOH HOH . 
K 6 HOH A 57 65 65 HOH HOH . 
K 6 HOH A 58 66 66 HOH HOH . 
K 6 HOH A 59 67 67 HOH HOH . 
K 6 HOH A 60 68 68 HOH HOH . 
K 6 HOH A 61 69 69 HOH HOH . 
K 6 HOH A 62 70 70 HOH HOH . 
K 6 HOH A 63 71 71 HOH HOH . 
K 6 HOH A 64 72 72 HOH HOH . 
K 6 HOH A 65 73 73 HOH HOH . 
K 6 HOH A 66 74 74 HOH HOH . 
K 6 HOH A 67 75 75 HOH HOH . 
K 6 HOH A 68 76 76 HOH HOH . 
K 6 HOH A 69 77 77 HOH HOH . 
K 6 HOH A 70 79 79 HOH HOH . 
K 6 HOH A 71 80 80 HOH HOH . 
K 6 HOH A 72 81 81 HOH HOH . 
K 6 HOH A 73 82 82 HOH HOH . 
K 6 HOH A 74 83 83 HOH HOH . 
K 6 HOH A 75 84 84 HOH HOH . 
K 6 HOH A 76 85 85 HOH HOH . 
K 6 HOH A 77 86 86 HOH HOH . 
K 6 HOH A 78 87 87 HOH HOH . 
K 6 HOH A 79 88 88 HOH HOH . 
K 6 HOH A 80 89 89 HOH HOH . 
K 6 HOH A 81 90 90 HOH HOH . 
K 6 HOH A 82 91 91 HOH HOH . 
K 6 HOH A 83 92 92 HOH HOH . 
K 6 HOH A 84 94 94 HOH HOH . 
K 6 HOH A 85 95 95 HOH HOH . 
K 6 HOH A 86 96 96 HOH HOH . 
K 6 HOH A 87 97 97 HOH HOH . 
K 6 HOH A 88 98 98 HOH HOH . 
K 6 HOH A 89 100 100 HOH HOH . 
K 6 HOH A 90 101 101 HOH HOH . 
K 6 HOH A 91 102 102 HOH HOH . 
K 6 HOH A 92 103 103 HOH HOH . 
K 6 HOH A 93 104 104 HOH HOH . 
K 6 HOH A 94 105 105 HOH HOH . 
K 6 HOH A 95 370 1 HOH HOH . 
K 6 HOH A 96 371 2 HOH HOH . 
K 6 HOH A 97 372 3 HOH HOH . 
K 6 HOH A 98 373 4 HOH HOH . 
K 6 HOH A 99 374 6 HOH HOH . 
K 6 HOH A 100 375 106 HOH HOH . 
K 6 HOH A 101 376 108 HOH HOH . 
K 6 HOH A 102 377 109 HOH HOH . 
K 6 HOH A 103 378 110 HOH HOH . 
K 6 HOH A 104 379 111 HOH HOH . 
K 6 HOH A 105 380 112 HOH HOH . 
K 6 HOH A 106 381 113 HOH HOH . 
K 6 HOH A 107 382 114 HOH HOH . 
K 6 HOH A 108 383 115 HOH HOH . 
K 6 HOH A 109 384 116 HOH HOH . 
K 6 HOH A 110 385 117 HOH HOH . 
K 6 HOH A 111 386 118 HOH HOH . 
K 6 HOH A 112 387 120 HOH HOH . 
K 6 HOH A 113 388 121 HOH HOH . 
K 6 HOH A 114 389 122 HOH HOH . 
K 6 HOH A 115 390 123 HOH HOH . 
K 6 HOH A 116 391 124 HOH HOH . 
K 6 HOH A 117 392 125 HOH HOH . 
K 6 HOH A 118 393 126 HOH HOH . 
K 6 HOH A 119 394 127 HOH HOH . 
K 6 HOH A 120 395 128 HOH HOH . 
K 6 HOH A 121 396 129 HOH HOH . 
K 6 HOH A 122 397 130 HOH HOH . 
K 6 HOH A 123 398 131 HOH HOH . 
K 6 HOH A 124 399 132 HOH HOH . 
K 6 HOH A 125 400 133 HOH HOH . 
K 6 HOH A 126 401 135 HOH HOH . 
K 6 HOH A 127 402 136 HOH HOH . 
K 6 HOH A 128 403 137 HOH HOH . 
K 6 HOH A 129 404 138 HOH HOH . 
K 6 HOH A 130 405 139 HOH HOH . 
K 6 HOH A 131 406 140 HOH HOH . 
K 6 HOH A 132 407 141 HOH HOH . 
K 6 HOH A 133 408 142 HOH HOH . 
K 6 HOH A 134 409 144 HOH HOH . 
K 6 HOH A 135 410 145 HOH HOH . 
K 6 HOH A 136 411 146 HOH HOH . 
K 6 HOH A 137 412 147 HOH HOH . 
K 6 HOH A 138 413 148 HOH HOH . 
K 6 HOH A 139 414 149 HOH HOH . 
K 6 HOH A 140 415 150 HOH HOH . 
K 6 HOH A 141 416 151 HOH HOH . 
K 6 HOH A 142 417 152 HOH HOH . 
K 6 HOH A 143 418 153 HOH HOH . 
K 6 HOH A 144 419 154 HOH HOH . 
K 6 HOH A 145 420 155 HOH HOH . 
K 6 HOH A 146 421 156 HOH HOH . 
K 6 HOH A 147 422 157 HOH HOH . 
K 6 HOH A 148 423 158 HOH HOH . 
K 6 HOH A 149 424 159 HOH HOH . 
K 6 HOH A 150 425 160 HOH HOH . 
K 6 HOH A 151 426 161 HOH HOH . 
K 6 HOH A 152 427 162 HOH HOH . 
K 6 HOH A 153 428 163 HOH HOH . 
K 6 HOH A 154 429 164 HOH HOH . 
K 6 HOH A 155 430 165 HOH HOH . 
K 6 HOH A 156 431 166 HOH HOH . 
K 6 HOH A 157 432 167 HOH HOH . 
K 6 HOH A 158 433 168 HOH HOH . 
K 6 HOH A 159 434 169 HOH HOH . 
K 6 HOH A 160 435 170 HOH HOH . 
K 6 HOH A 161 436 171 HOH HOH . 
K 6 HOH A 162 437 172 HOH HOH . 
K 6 HOH A 163 438 173 HOH HOH . 
K 6 HOH A 164 439 175 HOH HOH . 
K 6 HOH A 165 440 176 HOH HOH . 
K 6 HOH A 166 441 177 HOH HOH . 
K 6 HOH A 167 442 178 HOH HOH . 
K 6 HOH A 168 443 179 HOH HOH . 
K 6 HOH A 169 444 180 HOH HOH . 
K 6 HOH A 170 445 181 HOH HOH . 
K 6 HOH A 171 446 182 HOH HOH . 
K 6 HOH A 172 447 183 HOH HOH . 
K 6 HOH A 173 448 184 HOH HOH . 
K 6 HOH A 174 449 185 HOH HOH . 
K 6 HOH A 175 450 186 HOH HOH . 
K 6 HOH A 176 451 187 HOH HOH . 
K 6 HOH A 177 452 188 HOH HOH . 
K 6 HOH A 178 453 189 HOH HOH . 
K 6 HOH A 179 454 190 HOH HOH . 
K 6 HOH A 180 455 192 HOH HOH . 
K 6 HOH A 181 456 193 HOH HOH . 
K 6 HOH A 182 457 195 HOH HOH . 
K 6 HOH A 183 458 196 HOH HOH . 
K 6 HOH A 184 459 197 HOH HOH . 
K 6 HOH A 185 460 198 HOH HOH . 
K 6 HOH A 186 461 199 HOH HOH . 
K 6 HOH A 187 462 201 HOH HOH . 
K 6 HOH A 188 463 203 HOH HOH . 
K 6 HOH A 189 464 204 HOH HOH . 
K 6 HOH A 190 465 205 HOH HOH . 
K 6 HOH A 191 466 206 HOH HOH . 
K 6 HOH A 192 467 207 HOH HOH . 
K 6 HOH A 193 468 208 HOH HOH . 
K 6 HOH A 194 469 209 HOH HOH . 
K 6 HOH A 195 470 210 HOH HOH . 
K 6 HOH A 196 471 211 HOH HOH . 
K 6 HOH A 197 472 212 HOH HOH . 
K 6 HOH A 198 473 191 HOH HOH . 
K 6 HOH A 199 474 214 HOH HOH . 
K 6 HOH A 200 475 215 HOH HOH . 
K 6 HOH A 201 476 216 HOH HOH . 
K 6 HOH A 202 477 217 HOH HOH . 
K 6 HOH A 203 478 218 HOH HOH . 
K 6 HOH A 204 479 219 HOH HOH . 
K 6 HOH A 205 480 220 HOH HOH . 
K 6 HOH A 206 481 222 HOH HOH . 
K 6 HOH A 207 482 223 HOH HOH . 
K 6 HOH A 208 483 224 HOH HOH . 
K 6 HOH A 209 484 225 HOH HOH . 
K 6 HOH A 210 485 226 HOH HOH . 
K 6 HOH A 211 486 227 HOH HOH . 
K 6 HOH A 212 487 228 HOH HOH . 
K 6 HOH A 213 488 229 HOH HOH . 
K 6 HOH A 214 489 231 HOH HOH . 
K 6 HOH A 215 490 232 HOH HOH . 
K 6 HOH A 216 491 233 HOH HOH . 
K 6 HOH A 217 492 238 HOH HOH . 
K 6 HOH A 218 493 239 HOH HOH . 
K 6 HOH A 219 494 240 HOH HOH . 
K 6 HOH A 220 495 241 HOH HOH . 
K 6 HOH A 221 496 242 HOH HOH . 
K 6 HOH A 222 497 245 HOH HOH . 
K 6 HOH A 223 498 246 HOH HOH . 
K 6 HOH A 224 499 247 HOH HOH . 
K 6 HOH A 225 500 248 HOH HOH . 
K 6 HOH A 226 501 250 HOH HOH . 
K 6 HOH A 227 502 251 HOH HOH . 
K 6 HOH A 228 503 253 HOH HOH . 
K 6 HOH A 229 504 254 HOH HOH . 
L 6 HOH B 1 39 39 HOH HOH . 
L 6 HOH B 2 62 62 HOH HOH . 
L 6 HOH B 3 78 78 HOH HOH . 
L 6 HOH B 4 99 99 HOH HOH . 
L 6 HOH B 5 107 107 HOH HOH . 
L 6 HOH B 6 134 134 HOH HOH . 
L 6 HOH B 7 174 174 HOH HOH . 
L 6 HOH B 8 473 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 5 50.345 -12.233 10.402 1 48.2 ? C1 GOL 4 A 1 
HETATM 2 O O1 GOL . . . I 5 49.944 -10.955 9.929 1 51.34 ? O1 GOL 4 A 1 
HETATM 3 C C2 GOL . . . I 5 49.41 -12.741 11.509 1 46.42 ? C2 GOL 4 A 1 
HETATM 4 O O2 GOL . . . I 5 48.319 -13.483 10.979 1 38.79 ? O2 GOL 4 A 1 
HETATM 5 C C3 GOL . . . I 5 48.907 -11.557 12.331 1 47.55 ? C3 GOL 4 A 1 
HETATM 6 O O3 GOL . . . I 5 47.711 -11.931 12.975 1 48.29 ? O3 GOL 4 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           78 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           1241 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#