data_3M59 # _model_server_result.job_id 1p_HowDiezSbgS3kFzTlCg _model_server_result.datetime_utc '2024-12-11 22:29:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":6}' # _entry.id 3M59 # _exptl.entry_id 3M59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M59 _cell.length_a 83.497 _cell.length_b 83.497 _cell.length_c 95.718 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 185 1_555 B N SER 2 B SER 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 B C SER 4 B SER 188 1_555 B N MLY 5 B MLY 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B C MLY 5 B MLY 189 1_555 B N ASP 6 B ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 3M59 _atom_sites.fract_transf_matrix[1][1] 0.011976 _atom_sites.fract_transf_matrix[1][2] 0.006915 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 1 1 SAH SAH . D 4 CO A 1 367 1 CO CO . E 4 CO A 1 2 2 CO CO . F 4 CO A 1 3 3 CO CO . G 5 GOL A 1 368 2 GOL GOL . H 5 GOL A 1 369 3 GOL GOL . I 5 GOL A 1 4 4 GOL GOL . J 5 GOL A 1 6 6 GOL GOL . K 6 HOH A 1 5 5 HOH HOH . K 6 HOH A 2 7 7 HOH HOH . K 6 HOH A 3 8 8 HOH HOH . K 6 HOH A 4 9 9 HOH HOH . K 6 HOH A 5 10 10 HOH HOH . K 6 HOH A 6 11 11 HOH HOH . K 6 HOH A 7 12 12 HOH HOH . K 6 HOH A 8 13 13 HOH HOH . K 6 HOH A 9 14 14 HOH HOH . K 6 HOH A 10 15 15 HOH HOH . K 6 HOH A 11 16 16 HOH HOH . K 6 HOH A 12 17 17 HOH HOH . K 6 HOH A 13 18 18 HOH HOH . K 6 HOH A 14 19 19 HOH HOH . K 6 HOH A 15 20 20 HOH HOH . K 6 HOH A 16 21 21 HOH HOH . K 6 HOH A 17 22 22 HOH HOH . K 6 HOH A 18 23 23 HOH HOH . K 6 HOH A 19 24 24 HOH HOH . K 6 HOH A 20 25 25 HOH HOH . K 6 HOH A 21 26 26 HOH HOH . K 6 HOH A 22 27 27 HOH HOH . K 6 HOH A 23 28 28 HOH HOH . K 6 HOH A 24 29 29 HOH HOH . K 6 HOH A 25 30 30 HOH HOH . K 6 HOH A 26 31 31 HOH HOH . K 6 HOH A 27 32 32 HOH HOH . K 6 HOH A 28 33 33 HOH HOH . K 6 HOH A 29 34 34 HOH HOH . K 6 HOH A 30 35 35 HOH HOH . K 6 HOH A 31 36 36 HOH HOH . K 6 HOH A 32 37 37 HOH HOH . K 6 HOH A 33 38 38 HOH HOH . K 6 HOH A 34 40 40 HOH HOH . K 6 HOH A 35 41 41 HOH HOH . K 6 HOH A 36 42 42 HOH HOH . K 6 HOH A 37 43 43 HOH HOH . K 6 HOH A 38 44 44 HOH HOH . K 6 HOH A 39 45 45 HOH HOH . K 6 HOH A 40 46 46 HOH HOH . K 6 HOH A 41 47 47 HOH HOH . K 6 HOH A 42 48 48 HOH HOH . K 6 HOH A 43 49 49 HOH HOH . K 6 HOH A 44 50 50 HOH HOH . K 6 HOH A 45 51 51 HOH HOH . K 6 HOH A 46 52 52 HOH HOH . K 6 HOH A 47 53 53 HOH HOH . K 6 HOH A 48 54 54 HOH HOH . K 6 HOH A 49 55 55 HOH HOH . K 6 HOH A 50 56 56 HOH HOH . K 6 HOH A 51 57 57 HOH HOH . K 6 HOH A 52 58 58 HOH HOH . K 6 HOH A 53 59 59 HOH HOH . K 6 HOH A 54 60 60 HOH HOH . K 6 HOH A 55 61 61 HOH HOH . K 6 HOH A 56 64 64 HOH HOH . K 6 HOH A 57 65 65 HOH HOH . K 6 HOH A 58 66 66 HOH HOH . K 6 HOH A 59 67 67 HOH HOH . K 6 HOH A 60 68 68 HOH HOH . K 6 HOH A 61 69 69 HOH HOH . K 6 HOH A 62 70 70 HOH HOH . K 6 HOH A 63 71 71 HOH HOH . K 6 HOH A 64 72 72 HOH HOH . K 6 HOH A 65 73 73 HOH HOH . K 6 HOH A 66 74 74 HOH HOH . K 6 HOH A 67 75 75 HOH HOH . K 6 HOH A 68 76 76 HOH HOH . K 6 HOH A 69 77 77 HOH HOH . K 6 HOH A 70 79 79 HOH HOH . K 6 HOH A 71 80 80 HOH HOH . K 6 HOH A 72 81 81 HOH HOH . K 6 HOH A 73 82 82 HOH HOH . K 6 HOH A 74 83 83 HOH HOH . K 6 HOH A 75 84 84 HOH HOH . K 6 HOH A 76 85 85 HOH HOH . K 6 HOH A 77 86 86 HOH HOH . K 6 HOH A 78 87 87 HOH HOH . K 6 HOH A 79 88 88 HOH HOH . K 6 HOH A 80 89 89 HOH HOH . K 6 HOH A 81 90 90 HOH HOH . K 6 HOH A 82 91 91 HOH HOH . K 6 HOH A 83 92 92 HOH HOH . K 6 HOH A 84 94 94 HOH HOH . K 6 HOH A 85 95 95 HOH HOH . K 6 HOH A 86 96 96 HOH HOH . K 6 HOH A 87 97 97 HOH HOH . K 6 HOH A 88 98 98 HOH HOH . K 6 HOH A 89 100 100 HOH HOH . K 6 HOH A 90 101 101 HOH HOH . K 6 HOH A 91 102 102 HOH HOH . K 6 HOH A 92 103 103 HOH HOH . K 6 HOH A 93 104 104 HOH HOH . K 6 HOH A 94 105 105 HOH HOH . K 6 HOH A 95 370 1 HOH HOH . K 6 HOH A 96 371 2 HOH HOH . K 6 HOH A 97 372 3 HOH HOH . K 6 HOH A 98 373 4 HOH HOH . K 6 HOH A 99 374 6 HOH HOH . K 6 HOH A 100 375 106 HOH HOH . K 6 HOH A 101 376 108 HOH HOH . K 6 HOH A 102 377 109 HOH HOH . K 6 HOH A 103 378 110 HOH HOH . K 6 HOH A 104 379 111 HOH HOH . K 6 HOH A 105 380 112 HOH HOH . K 6 HOH A 106 381 113 HOH HOH . K 6 HOH A 107 382 114 HOH HOH . K 6 HOH A 108 383 115 HOH HOH . K 6 HOH A 109 384 116 HOH HOH . K 6 HOH A 110 385 117 HOH HOH . K 6 HOH A 111 386 118 HOH HOH . K 6 HOH A 112 387 120 HOH HOH . K 6 HOH A 113 388 121 HOH HOH . K 6 HOH A 114 389 122 HOH HOH . K 6 HOH A 115 390 123 HOH HOH . K 6 HOH A 116 391 124 HOH HOH . K 6 HOH A 117 392 125 HOH HOH . K 6 HOH A 118 393 126 HOH HOH . K 6 HOH A 119 394 127 HOH HOH . K 6 HOH A 120 395 128 HOH HOH . K 6 HOH A 121 396 129 HOH HOH . K 6 HOH A 122 397 130 HOH HOH . K 6 HOH A 123 398 131 HOH HOH . K 6 HOH A 124 399 132 HOH HOH . K 6 HOH A 125 400 133 HOH HOH . K 6 HOH A 126 401 135 HOH HOH . K 6 HOH A 127 402 136 HOH HOH . K 6 HOH A 128 403 137 HOH HOH . K 6 HOH A 129 404 138 HOH HOH . K 6 HOH A 130 405 139 HOH HOH . K 6 HOH A 131 406 140 HOH HOH . K 6 HOH A 132 407 141 HOH HOH . K 6 HOH A 133 408 142 HOH HOH . K 6 HOH A 134 409 144 HOH HOH . K 6 HOH A 135 410 145 HOH HOH . K 6 HOH A 136 411 146 HOH HOH . K 6 HOH A 137 412 147 HOH HOH . K 6 HOH A 138 413 148 HOH HOH . K 6 HOH A 139 414 149 HOH HOH . K 6 HOH A 140 415 150 HOH HOH . K 6 HOH A 141 416 151 HOH HOH . K 6 HOH A 142 417 152 HOH HOH . K 6 HOH A 143 418 153 HOH HOH . K 6 HOH A 144 419 154 HOH HOH . K 6 HOH A 145 420 155 HOH HOH . K 6 HOH A 146 421 156 HOH HOH . K 6 HOH A 147 422 157 HOH HOH . K 6 HOH A 148 423 158 HOH HOH . K 6 HOH A 149 424 159 HOH HOH . K 6 HOH A 150 425 160 HOH HOH . K 6 HOH A 151 426 161 HOH HOH . K 6 HOH A 152 427 162 HOH HOH . K 6 HOH A 153 428 163 HOH HOH . K 6 HOH A 154 429 164 HOH HOH . K 6 HOH A 155 430 165 HOH HOH . K 6 HOH A 156 431 166 HOH HOH . K 6 HOH A 157 432 167 HOH HOH . K 6 HOH A 158 433 168 HOH HOH . K 6 HOH A 159 434 169 HOH HOH . K 6 HOH A 160 435 170 HOH HOH . K 6 HOH A 161 436 171 HOH HOH . K 6 HOH A 162 437 172 HOH HOH . K 6 HOH A 163 438 173 HOH HOH . K 6 HOH A 164 439 175 HOH HOH . K 6 HOH A 165 440 176 HOH HOH . K 6 HOH A 166 441 177 HOH HOH . K 6 HOH A 167 442 178 HOH HOH . K 6 HOH A 168 443 179 HOH HOH . K 6 HOH A 169 444 180 HOH HOH . K 6 HOH A 170 445 181 HOH HOH . K 6 HOH A 171 446 182 HOH HOH . K 6 HOH A 172 447 183 HOH HOH . K 6 HOH A 173 448 184 HOH HOH . K 6 HOH A 174 449 185 HOH HOH . K 6 HOH A 175 450 186 HOH HOH . K 6 HOH A 176 451 187 HOH HOH . K 6 HOH A 177 452 188 HOH HOH . K 6 HOH A 178 453 189 HOH HOH . K 6 HOH A 179 454 190 HOH HOH . K 6 HOH A 180 455 192 HOH HOH . K 6 HOH A 181 456 193 HOH HOH . K 6 HOH A 182 457 195 HOH HOH . K 6 HOH A 183 458 196 HOH HOH . K 6 HOH A 184 459 197 HOH HOH . K 6 HOH A 185 460 198 HOH HOH . K 6 HOH A 186 461 199 HOH HOH . K 6 HOH A 187 462 201 HOH HOH . K 6 HOH A 188 463 203 HOH HOH . K 6 HOH A 189 464 204 HOH HOH . K 6 HOH A 190 465 205 HOH HOH . K 6 HOH A 191 466 206 HOH HOH . K 6 HOH A 192 467 207 HOH HOH . K 6 HOH A 193 468 208 HOH HOH . K 6 HOH A 194 469 209 HOH HOH . K 6 HOH A 195 470 210 HOH HOH . K 6 HOH A 196 471 211 HOH HOH . K 6 HOH A 197 472 212 HOH HOH . K 6 HOH A 198 473 191 HOH HOH . K 6 HOH A 199 474 214 HOH HOH . K 6 HOH A 200 475 215 HOH HOH . K 6 HOH A 201 476 216 HOH HOH . K 6 HOH A 202 477 217 HOH HOH . K 6 HOH A 203 478 218 HOH HOH . K 6 HOH A 204 479 219 HOH HOH . K 6 HOH A 205 480 220 HOH HOH . K 6 HOH A 206 481 222 HOH HOH . K 6 HOH A 207 482 223 HOH HOH . K 6 HOH A 208 483 224 HOH HOH . K 6 HOH A 209 484 225 HOH HOH . K 6 HOH A 210 485 226 HOH HOH . K 6 HOH A 211 486 227 HOH HOH . K 6 HOH A 212 487 228 HOH HOH . K 6 HOH A 213 488 229 HOH HOH . K 6 HOH A 214 489 231 HOH HOH . K 6 HOH A 215 490 232 HOH HOH . K 6 HOH A 216 491 233 HOH HOH . K 6 HOH A 217 492 238 HOH HOH . K 6 HOH A 218 493 239 HOH HOH . K 6 HOH A 219 494 240 HOH HOH . K 6 HOH A 220 495 241 HOH HOH . K 6 HOH A 221 496 242 HOH HOH . K 6 HOH A 222 497 245 HOH HOH . K 6 HOH A 223 498 246 HOH HOH . K 6 HOH A 224 499 247 HOH HOH . K 6 HOH A 225 500 248 HOH HOH . K 6 HOH A 226 501 250 HOH HOH . K 6 HOH A 227 502 251 HOH HOH . K 6 HOH A 228 503 253 HOH HOH . K 6 HOH A 229 504 254 HOH HOH . L 6 HOH B 1 39 39 HOH HOH . L 6 HOH B 2 62 62 HOH HOH . L 6 HOH B 3 78 78 HOH HOH . L 6 HOH B 4 99 99 HOH HOH . L 6 HOH B 5 107 107 HOH HOH . L 6 HOH B 6 134 134 HOH HOH . L 6 HOH B 7 174 174 HOH HOH . L 6 HOH B 8 473 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 5 47.208 1.524 12.222 1 54.76 ? C1 GOL 6 A 1 HETATM 2 O O1 GOL . . . J 5 45.842 1.586 12.594 1 57.88 ? O1 GOL 6 A 1 HETATM 3 C C2 GOL . . . J 5 47.68 2.834 11.592 1 52.32 ? C2 GOL 6 A 1 HETATM 4 O O2 GOL . . . J 5 46.587 3.597 11.131 1 46.07 ? O2 GOL 6 A 1 HETATM 5 C C3 GOL . . . J 5 48.577 2.488 10.411 1 53.61 ? C3 GOL 6 A 1 HETATM 6 O O3 GOL . . . J 5 48.326 1.136 10.069 1 55.09 ? O3 GOL 6 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #