data_3M5A # _model_server_result.job_id mc3FBqF9SFxNvrCvDSsL_A _model_server_result.datetime_utc '2024-11-04 22:56:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":369}' # _entry.id 3M5A # _exptl.entry_id 3M5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M5A _cell.length_a 83.108 _cell.length_b 83.108 _cell.length_c 95.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 185 1_555 B N SER 2 B SER 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 B C SER 4 B SER 188 1_555 B N M3L 5 B M3L 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 B C M3L 5 B M3L 189 1_555 B N ASP 6 B ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 J CO CO . A CO 8 4_455 A NE2 HIS 11 A HIS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc2 J CO CO . A CO 8 1_555 A NE2 HIS 178 A HIS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 3M5A _atom_sites.fract_transf_matrix[1][1] 0.012033 _atom_sites.fract_transf_matrix[1][2] 0.006947 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 1 1 SAH SAH . D 4 CO A 1 367 1 CO CO . E 4 CO A 1 2 2 CO CO . F 4 CO A 1 3 3 CO CO . G 4 CO A 1 4 4 CO CO . H 4 CO A 1 5 5 CO CO . I 4 CO A 1 7 7 CO CO . J 4 CO A 1 8 8 CO CO . K 5 GOL A 1 368 1 GOL GOL . L 5 GOL A 1 369 2 GOL GOL . M 5 GOL A 1 370 3 GOL GOL . N 6 HOH A 1 6 6 HOH HOH . N 6 HOH A 2 9 9 HOH HOH . N 6 HOH A 3 10 10 HOH HOH . N 6 HOH A 4 11 11 HOH HOH . N 6 HOH A 5 12 12 HOH HOH . N 6 HOH A 6 13 13 HOH HOH . N 6 HOH A 7 14 14 HOH HOH . N 6 HOH A 8 15 15 HOH HOH . N 6 HOH A 9 16 16 HOH HOH . N 6 HOH A 10 17 17 HOH HOH . N 6 HOH A 11 18 18 HOH HOH . N 6 HOH A 12 19 19 HOH HOH . N 6 HOH A 13 20 20 HOH HOH . N 6 HOH A 14 21 21 HOH HOH . N 6 HOH A 15 22 22 HOH HOH . N 6 HOH A 16 23 23 HOH HOH . N 6 HOH A 17 24 24 HOH HOH . N 6 HOH A 18 25 25 HOH HOH . N 6 HOH A 19 26 26 HOH HOH . N 6 HOH A 20 27 27 HOH HOH . N 6 HOH A 21 29 29 HOH HOH . N 6 HOH A 22 30 30 HOH HOH . N 6 HOH A 23 31 31 HOH HOH . N 6 HOH A 24 32 32 HOH HOH . N 6 HOH A 25 33 33 HOH HOH . N 6 HOH A 26 34 34 HOH HOH . N 6 HOH A 27 35 35 HOH HOH . N 6 HOH A 28 37 37 HOH HOH . N 6 HOH A 29 38 38 HOH HOH . N 6 HOH A 30 39 39 HOH HOH . N 6 HOH A 31 40 40 HOH HOH . N 6 HOH A 32 41 41 HOH HOH . N 6 HOH A 33 42 42 HOH HOH . N 6 HOH A 34 43 43 HOH HOH . N 6 HOH A 35 44 44 HOH HOH . N 6 HOH A 36 45 45 HOH HOH . N 6 HOH A 37 46 46 HOH HOH . N 6 HOH A 38 47 47 HOH HOH . N 6 HOH A 39 49 49 HOH HOH . N 6 HOH A 40 50 50 HOH HOH . N 6 HOH A 41 51 51 HOH HOH . N 6 HOH A 42 52 52 HOH HOH . N 6 HOH A 43 54 54 HOH HOH . N 6 HOH A 44 55 55 HOH HOH . N 6 HOH A 45 56 56 HOH HOH . N 6 HOH A 46 59 59 HOH HOH . N 6 HOH A 47 60 60 HOH HOH . N 6 HOH A 48 61 61 HOH HOH . N 6 HOH A 49 62 62 HOH HOH . N 6 HOH A 50 63 63 HOH HOH . N 6 HOH A 51 64 64 HOH HOH . N 6 HOH A 52 65 65 HOH HOH . N 6 HOH A 53 66 66 HOH HOH . N 6 HOH A 54 67 67 HOH HOH . N 6 HOH A 55 70 70 HOH HOH . N 6 HOH A 56 71 71 HOH HOH . N 6 HOH A 57 72 72 HOH HOH . N 6 HOH A 58 73 73 HOH HOH . N 6 HOH A 59 74 74 HOH HOH . N 6 HOH A 60 75 75 HOH HOH . N 6 HOH A 61 76 76 HOH HOH . N 6 HOH A 62 77 77 HOH HOH . N 6 HOH A 63 78 78 HOH HOH . N 6 HOH A 64 79 79 HOH HOH . N 6 HOH A 65 80 80 HOH HOH . N 6 HOH A 66 81 81 HOH HOH . N 6 HOH A 67 82 82 HOH HOH . N 6 HOH A 68 85 85 HOH HOH . N 6 HOH A 69 86 86 HOH HOH . N 6 HOH A 70 87 87 HOH HOH . N 6 HOH A 71 88 88 HOH HOH . N 6 HOH A 72 89 89 HOH HOH . N 6 HOH A 73 90 90 HOH HOH . N 6 HOH A 74 91 91 HOH HOH . N 6 HOH A 75 92 92 HOH HOH . N 6 HOH A 76 93 93 HOH HOH . N 6 HOH A 77 94 94 HOH HOH . N 6 HOH A 78 96 96 HOH HOH . N 6 HOH A 79 99 99 HOH HOH . N 6 HOH A 80 100 100 HOH HOH . N 6 HOH A 81 101 101 HOH HOH . N 6 HOH A 82 102 102 HOH HOH . N 6 HOH A 83 103 103 HOH HOH . N 6 HOH A 84 104 104 HOH HOH . N 6 HOH A 85 105 105 HOH HOH . N 6 HOH A 86 371 1 HOH HOH . N 6 HOH A 87 372 2 HOH HOH . N 6 HOH A 88 373 3 HOH HOH . N 6 HOH A 89 374 4 HOH HOH . N 6 HOH A 90 375 5 HOH HOH . N 6 HOH A 91 376 7 HOH HOH . N 6 HOH A 92 377 8 HOH HOH . N 6 HOH A 93 378 106 HOH HOH . N 6 HOH A 94 379 109 HOH HOH . N 6 HOH A 95 380 110 HOH HOH . N 6 HOH A 96 381 112 HOH HOH . N 6 HOH A 97 382 113 HOH HOH . N 6 HOH A 98 383 114 HOH HOH . N 6 HOH A 99 384 115 HOH HOH . N 6 HOH A 100 385 116 HOH HOH . N 6 HOH A 101 386 117 HOH HOH . N 6 HOH A 102 387 118 HOH HOH . N 6 HOH A 103 388 119 HOH HOH . N 6 HOH A 104 389 122 HOH HOH . N 6 HOH A 105 390 123 HOH HOH . N 6 HOH A 106 391 124 HOH HOH . N 6 HOH A 107 392 125 HOH HOH . N 6 HOH A 108 393 126 HOH HOH . N 6 HOH A 109 394 127 HOH HOH . N 6 HOH A 110 395 128 HOH HOH . N 6 HOH A 111 396 129 HOH HOH . N 6 HOH A 112 397 130 HOH HOH . N 6 HOH A 113 398 132 HOH HOH . N 6 HOH A 114 399 133 HOH HOH . N 6 HOH A 115 400 134 HOH HOH . N 6 HOH A 116 401 135 HOH HOH . N 6 HOH A 117 402 136 HOH HOH . N 6 HOH A 118 403 138 HOH HOH . N 6 HOH A 119 404 140 HOH HOH . N 6 HOH A 120 405 141 HOH HOH . N 6 HOH A 121 406 142 HOH HOH . N 6 HOH A 122 407 143 HOH HOH . N 6 HOH A 123 408 144 HOH HOH . N 6 HOH A 124 409 145 HOH HOH . N 6 HOH A 125 410 146 HOH HOH . N 6 HOH A 126 411 147 HOH HOH . N 6 HOH A 127 412 148 HOH HOH . N 6 HOH A 128 413 149 HOH HOH . N 6 HOH A 129 414 150 HOH HOH . N 6 HOH A 130 415 151 HOH HOH . N 6 HOH A 131 416 152 HOH HOH . N 6 HOH A 132 417 153 HOH HOH . N 6 HOH A 133 418 154 HOH HOH . N 6 HOH A 134 419 155 HOH HOH . N 6 HOH A 135 420 156 HOH HOH . N 6 HOH A 136 421 157 HOH HOH . N 6 HOH A 137 422 158 HOH HOH . N 6 HOH A 138 423 159 HOH HOH . N 6 HOH A 139 424 160 HOH HOH . N 6 HOH A 140 425 161 HOH HOH . N 6 HOH A 141 426 162 HOH HOH . N 6 HOH A 142 427 163 HOH HOH . N 6 HOH A 143 428 165 HOH HOH . N 6 HOH A 144 429 166 HOH HOH . N 6 HOH A 145 430 167 HOH HOH . N 6 HOH A 146 431 168 HOH HOH . N 6 HOH A 147 432 169 HOH HOH . O 6 HOH B 1 36 36 HOH HOH . O 6 HOH B 2 83 83 HOH HOH . O 6 HOH B 3 84 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 5 -37.817 -4.814 -0.484 1 45.34 ? C1 GOL 369 A 1 HETATM 2 O O1 GOL . . . L 5 -37.707 -3.606 -1.23 1 43.59 ? O1 GOL 369 A 1 HETATM 3 C C2 GOL . . . L 5 -39.254 -5.031 -0.016 1 44.41 ? C2 GOL 369 A 1 HETATM 4 O O2 GOL . . . L 5 -39.285 -5.835 1.155 1 45.03 ? O2 GOL 369 A 1 HETATM 5 C C3 GOL . . . L 5 -39.755 -3.666 0.377 1 42.59 ? C3 GOL 369 A 1 HETATM 6 O O3 GOL . . . L 5 -38.864 -3.173 1.352 1 37.31 ? O3 GOL 369 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 6 #