data_3M5A
#
_model_server_result.job_id            aGhUQNp9b5hNN4Y8HuNUMQ 
_model_server_result.datetime_utc      '2024-11-04 22:56:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m5a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":4}' 
#
_entry.id    3M5A 
#
_exptl.entry_id    3M5A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.933 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT (II) ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3M5A 
_cell.length_a            83.108 
_cell.length_b            83.108 
_cell.length_c            95.57 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M5A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 B ACE 185 1_555 B N SER 2 B SER 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 B C SER 4 B SER 188 1_555 B N M3L 5 B M3L 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 B C M3L 5 B M3L 189 1_555 B N ASP 6 B ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 J CO CO . A CO 8 4_455 A NE2 HIS 11 A HIS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc2 J CO CO . A CO 8 1_555 A NE2 HIS 178 A HIS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
#
_chem_comp.formula           'Co 2' 
_chem_comp.formula_weight    58.933 
_chem_comp.id                CO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3M5A 
_atom_sites.fract_transf_matrix[1][1]    0.012033 
_atom_sites.fract_transf_matrix[1][2]    0.006947 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SAH A 1 1 1 SAH SAH . 
D 4 CO A 1 367 1 CO CO . 
E 4 CO A 1 2 2 CO CO . 
F 4 CO A 1 3 3 CO CO . 
G 4 CO A 1 4 4 CO CO . 
H 4 CO A 1 5 5 CO CO . 
I 4 CO A 1 7 7 CO CO . 
J 4 CO A 1 8 8 CO CO . 
K 5 GOL A 1 368 1 GOL GOL . 
L 5 GOL A 1 369 2 GOL GOL . 
M 5 GOL A 1 370 3 GOL GOL . 
N 6 HOH A 1 6 6 HOH HOH . 
N 6 HOH A 2 9 9 HOH HOH . 
N 6 HOH A 3 10 10 HOH HOH . 
N 6 HOH A 4 11 11 HOH HOH . 
N 6 HOH A 5 12 12 HOH HOH . 
N 6 HOH A 6 13 13 HOH HOH . 
N 6 HOH A 7 14 14 HOH HOH . 
N 6 HOH A 8 15 15 HOH HOH . 
N 6 HOH A 9 16 16 HOH HOH . 
N 6 HOH A 10 17 17 HOH HOH . 
N 6 HOH A 11 18 18 HOH HOH . 
N 6 HOH A 12 19 19 HOH HOH . 
N 6 HOH A 13 20 20 HOH HOH . 
N 6 HOH A 14 21 21 HOH HOH . 
N 6 HOH A 15 22 22 HOH HOH . 
N 6 HOH A 16 23 23 HOH HOH . 
N 6 HOH A 17 24 24 HOH HOH . 
N 6 HOH A 18 25 25 HOH HOH . 
N 6 HOH A 19 26 26 HOH HOH . 
N 6 HOH A 20 27 27 HOH HOH . 
N 6 HOH A 21 29 29 HOH HOH . 
N 6 HOH A 22 30 30 HOH HOH . 
N 6 HOH A 23 31 31 HOH HOH . 
N 6 HOH A 24 32 32 HOH HOH . 
N 6 HOH A 25 33 33 HOH HOH . 
N 6 HOH A 26 34 34 HOH HOH . 
N 6 HOH A 27 35 35 HOH HOH . 
N 6 HOH A 28 37 37 HOH HOH . 
N 6 HOH A 29 38 38 HOH HOH . 
N 6 HOH A 30 39 39 HOH HOH . 
N 6 HOH A 31 40 40 HOH HOH . 
N 6 HOH A 32 41 41 HOH HOH . 
N 6 HOH A 33 42 42 HOH HOH . 
N 6 HOH A 34 43 43 HOH HOH . 
N 6 HOH A 35 44 44 HOH HOH . 
N 6 HOH A 36 45 45 HOH HOH . 
N 6 HOH A 37 46 46 HOH HOH . 
N 6 HOH A 38 47 47 HOH HOH . 
N 6 HOH A 39 49 49 HOH HOH . 
N 6 HOH A 40 50 50 HOH HOH . 
N 6 HOH A 41 51 51 HOH HOH . 
N 6 HOH A 42 52 52 HOH HOH . 
N 6 HOH A 43 54 54 HOH HOH . 
N 6 HOH A 44 55 55 HOH HOH . 
N 6 HOH A 45 56 56 HOH HOH . 
N 6 HOH A 46 59 59 HOH HOH . 
N 6 HOH A 47 60 60 HOH HOH . 
N 6 HOH A 48 61 61 HOH HOH . 
N 6 HOH A 49 62 62 HOH HOH . 
N 6 HOH A 50 63 63 HOH HOH . 
N 6 HOH A 51 64 64 HOH HOH . 
N 6 HOH A 52 65 65 HOH HOH . 
N 6 HOH A 53 66 66 HOH HOH . 
N 6 HOH A 54 67 67 HOH HOH . 
N 6 HOH A 55 70 70 HOH HOH . 
N 6 HOH A 56 71 71 HOH HOH . 
N 6 HOH A 57 72 72 HOH HOH . 
N 6 HOH A 58 73 73 HOH HOH . 
N 6 HOH A 59 74 74 HOH HOH . 
N 6 HOH A 60 75 75 HOH HOH . 
N 6 HOH A 61 76 76 HOH HOH . 
N 6 HOH A 62 77 77 HOH HOH . 
N 6 HOH A 63 78 78 HOH HOH . 
N 6 HOH A 64 79 79 HOH HOH . 
N 6 HOH A 65 80 80 HOH HOH . 
N 6 HOH A 66 81 81 HOH HOH . 
N 6 HOH A 67 82 82 HOH HOH . 
N 6 HOH A 68 85 85 HOH HOH . 
N 6 HOH A 69 86 86 HOH HOH . 
N 6 HOH A 70 87 87 HOH HOH . 
N 6 HOH A 71 88 88 HOH HOH . 
N 6 HOH A 72 89 89 HOH HOH . 
N 6 HOH A 73 90 90 HOH HOH . 
N 6 HOH A 74 91 91 HOH HOH . 
N 6 HOH A 75 92 92 HOH HOH . 
N 6 HOH A 76 93 93 HOH HOH . 
N 6 HOH A 77 94 94 HOH HOH . 
N 6 HOH A 78 96 96 HOH HOH . 
N 6 HOH A 79 99 99 HOH HOH . 
N 6 HOH A 80 100 100 HOH HOH . 
N 6 HOH A 81 101 101 HOH HOH . 
N 6 HOH A 82 102 102 HOH HOH . 
N 6 HOH A 83 103 103 HOH HOH . 
N 6 HOH A 84 104 104 HOH HOH . 
N 6 HOH A 85 105 105 HOH HOH . 
N 6 HOH A 86 371 1 HOH HOH . 
N 6 HOH A 87 372 2 HOH HOH . 
N 6 HOH A 88 373 3 HOH HOH . 
N 6 HOH A 89 374 4 HOH HOH . 
N 6 HOH A 90 375 5 HOH HOH . 
N 6 HOH A 91 376 7 HOH HOH . 
N 6 HOH A 92 377 8 HOH HOH . 
N 6 HOH A 93 378 106 HOH HOH . 
N 6 HOH A 94 379 109 HOH HOH . 
N 6 HOH A 95 380 110 HOH HOH . 
N 6 HOH A 96 381 112 HOH HOH . 
N 6 HOH A 97 382 113 HOH HOH . 
N 6 HOH A 98 383 114 HOH HOH . 
N 6 HOH A 99 384 115 HOH HOH . 
N 6 HOH A 100 385 116 HOH HOH . 
N 6 HOH A 101 386 117 HOH HOH . 
N 6 HOH A 102 387 118 HOH HOH . 
N 6 HOH A 103 388 119 HOH HOH . 
N 6 HOH A 104 389 122 HOH HOH . 
N 6 HOH A 105 390 123 HOH HOH . 
N 6 HOH A 106 391 124 HOH HOH . 
N 6 HOH A 107 392 125 HOH HOH . 
N 6 HOH A 108 393 126 HOH HOH . 
N 6 HOH A 109 394 127 HOH HOH . 
N 6 HOH A 110 395 128 HOH HOH . 
N 6 HOH A 111 396 129 HOH HOH . 
N 6 HOH A 112 397 130 HOH HOH . 
N 6 HOH A 113 398 132 HOH HOH . 
N 6 HOH A 114 399 133 HOH HOH . 
N 6 HOH A 115 400 134 HOH HOH . 
N 6 HOH A 116 401 135 HOH HOH . 
N 6 HOH A 117 402 136 HOH HOH . 
N 6 HOH A 118 403 138 HOH HOH . 
N 6 HOH A 119 404 140 HOH HOH . 
N 6 HOH A 120 405 141 HOH HOH . 
N 6 HOH A 121 406 142 HOH HOH . 
N 6 HOH A 122 407 143 HOH HOH . 
N 6 HOH A 123 408 144 HOH HOH . 
N 6 HOH A 124 409 145 HOH HOH . 
N 6 HOH A 125 410 146 HOH HOH . 
N 6 HOH A 126 411 147 HOH HOH . 
N 6 HOH A 127 412 148 HOH HOH . 
N 6 HOH A 128 413 149 HOH HOH . 
N 6 HOH A 129 414 150 HOH HOH . 
N 6 HOH A 130 415 151 HOH HOH . 
N 6 HOH A 131 416 152 HOH HOH . 
N 6 HOH A 132 417 153 HOH HOH . 
N 6 HOH A 133 418 154 HOH HOH . 
N 6 HOH A 134 419 155 HOH HOH . 
N 6 HOH A 135 420 156 HOH HOH . 
N 6 HOH A 136 421 157 HOH HOH . 
N 6 HOH A 137 422 158 HOH HOH . 
N 6 HOH A 138 423 159 HOH HOH . 
N 6 HOH A 139 424 160 HOH HOH . 
N 6 HOH A 140 425 161 HOH HOH . 
N 6 HOH A 141 426 162 HOH HOH . 
N 6 HOH A 142 427 163 HOH HOH . 
N 6 HOH A 143 428 165 HOH HOH . 
N 6 HOH A 144 429 166 HOH HOH . 
N 6 HOH A 145 430 167 HOH HOH . 
N 6 HOH A 146 431 168 HOH HOH . 
N 6 HOH A 147 432 169 HOH HOH . 
O 6 HOH B 1 36 36 HOH HOH . 
O 6 HOH B 2 83 83 HOH HOH . 
O 6 HOH B 3 84 84 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CO 
_atom_site.label_atom_id         CO 
_atom_site.label_comp_id         CO 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -46.609 
_atom_site.Cartn_y               -2.544 
_atom_site.Cartn_z               11.396 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        120.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CO 
_atom_site.auth_comp_id          CO 
_atom_site.auth_seq_id           4 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#