data_3M5C # _model_server_result.job_id fVRzCrphST60ML2cijJCaw _model_server_result.datetime_utc '2024-11-12 20:36:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":345}' # _entry.id 3M5C # _exptl.entry_id 3M5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.214 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M5C _cell.length_a 129.288 _cell.length_b 129.288 _cell.length_c 129.288 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_665 -z+3/2,-x+1,y+1/2 0 0 -1 -1 0 0 0 1 0 193.932 129.288 64.644 3 'crystal symmetry operation' 10_646 -y+1,z-1/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 129.288 -64.644 193.932 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H17 N2 O7 P' _chem_comp.formula_weight 296.214 _chem_comp.id PA9 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA PA9 sing 237 n n CA N1 PA9 sing 238 n n CA CB PA9 sing 239 n n CA HA PA9 sing 240 n n CG CB PA9 sing 241 n n CB HB PA9 sing 242 n n CB HBA PA9 sing 243 n n CG CD PA9 sing 244 n n CG HG PA9 sing 245 n n CG HGA PA9 sing 246 n n CD N2 PA9 sing 247 n n CD HD PA9 sing 248 n n CD HDA PA9 sing 249 n n O C PA9 doub 250 n n OXT C PA9 sing 251 n n OXT HOXT PA9 sing 252 n n O1 C1 PA9 doub 253 n n C1 C2 PA9 sing 254 n n C1 N1 PA9 sing 255 n n O1P P PA9 doub 256 n n C4 P PA9 sing 257 n n P O2P PA9 sing 258 n n P O3P PA9 sing 259 n n O2P HO2P PA9 sing 260 n n O3P HO3P PA9 sing 261 n n N1 HN1 PA9 sing 262 n n C2 H2 PA9 sing 263 n n C2 H2A PA9 sing 264 n n C2 H2B PA9 sing 265 n n N2 C3 PA9 sing 266 n n N2 HN2 PA9 sing 267 n n O2 C3 PA9 doub 268 n n C3 C4 PA9 sing 269 n n C4 H4 PA9 sing 270 n n C4 H4A PA9 sing 271 n n # _atom_sites.entry_id 3M5C _atom_sites.fract_transf_matrix[1][1] 0.007735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PA9 A 1 345 345 PA9 PA9 . C 3 SO4 A 1 350 350 SO4 SO4 . D 4 HOH A 1 340 1 HOH TIP . D 4 HOH A 2 341 2 HOH TIP . D 4 HOH A 3 342 3 HOH TIP . D 4 HOH A 4 343 4 HOH TIP . D 4 HOH A 5 344 5 HOH TIP . D 4 HOH A 6 346 6 HOH TIP . D 4 HOH A 7 347 7 HOH TIP . D 4 HOH A 8 348 8 HOH TIP . D 4 HOH A 9 349 9 HOH TIP . D 4 HOH A 10 351 10 HOH TIP . D 4 HOH A 11 352 11 HOH TIP . D 4 HOH A 12 353 12 HOH TIP . D 4 HOH A 13 354 13 HOH TIP . D 4 HOH A 14 355 14 HOH TIP . D 4 HOH A 15 356 15 HOH TIP . D 4 HOH A 16 357 16 HOH TIP . D 4 HOH A 17 358 17 HOH TIP . D 4 HOH A 18 359 18 HOH TIP . D 4 HOH A 19 360 19 HOH TIP . D 4 HOH A 20 361 20 HOH TIP . D 4 HOH A 21 362 21 HOH TIP . D 4 HOH A 22 363 22 HOH TIP . D 4 HOH A 23 364 23 HOH TIP . D 4 HOH A 24 365 24 HOH TIP . D 4 HOH A 25 366 25 HOH TIP . D 4 HOH A 26 367 26 HOH TIP . D 4 HOH A 27 368 27 HOH TIP . D 4 HOH A 28 369 28 HOH TIP . D 4 HOH A 29 370 29 HOH TIP . D 4 HOH A 30 371 30 HOH TIP . D 4 HOH A 31 372 31 HOH TIP . D 4 HOH A 32 373 32 HOH TIP . D 4 HOH A 33 374 33 HOH TIP . D 4 HOH A 34 375 34 HOH TIP . D 4 HOH A 35 376 35 HOH TIP . D 4 HOH A 36 377 36 HOH TIP . D 4 HOH A 37 378 37 HOH TIP . D 4 HOH A 38 379 38 HOH TIP . D 4 HOH A 39 380 39 HOH TIP . D 4 HOH A 40 381 40 HOH TIP . D 4 HOH A 41 382 41 HOH TIP . D 4 HOH A 42 383 42 HOH TIP . D 4 HOH A 43 384 43 HOH TIP . D 4 HOH A 44 385 44 HOH TIP . D 4 HOH A 45 386 45 HOH TIP . D 4 HOH A 46 387 46 HOH TIP . D 4 HOH A 47 388 47 HOH TIP . D 4 HOH A 48 389 48 HOH TIP . D 4 HOH A 49 390 49 HOH TIP . D 4 HOH A 50 391 50 HOH TIP . D 4 HOH A 51 392 51 HOH TIP . D 4 HOH A 52 393 52 HOH TIP . D 4 HOH A 53 394 53 HOH TIP . D 4 HOH A 54 395 54 HOH TIP . D 4 HOH A 55 396 55 HOH TIP . D 4 HOH A 56 397 56 HOH TIP . D 4 HOH A 57 398 57 HOH TIP . D 4 HOH A 58 399 58 HOH TIP . D 4 HOH A 59 400 59 HOH TIP . D 4 HOH A 60 401 60 HOH TIP . D 4 HOH A 61 402 61 HOH TIP . D 4 HOH A 62 403 62 HOH TIP . D 4 HOH A 63 404 63 HOH TIP . D 4 HOH A 64 405 64 HOH TIP . D 4 HOH A 65 406 65 HOH TIP . D 4 HOH A 66 407 66 HOH TIP . D 4 HOH A 67 408 67 HOH TIP . D 4 HOH A 68 409 68 HOH TIP . D 4 HOH A 69 410 69 HOH TIP . D 4 HOH A 70 411 70 HOH TIP . D 4 HOH A 71 412 71 HOH TIP . D 4 HOH A 72 413 72 HOH TIP . D 4 HOH A 73 414 73 HOH TIP . D 4 HOH A 74 415 74 HOH TIP . D 4 HOH A 75 416 75 HOH TIP . D 4 HOH A 76 417 76 HOH TIP . D 4 HOH A 77 418 77 HOH TIP . D 4 HOH A 78 419 78 HOH TIP . D 4 HOH A 79 420 79 HOH TIP . D 4 HOH A 80 421 80 HOH TIP . D 4 HOH A 81 422 81 HOH TIP . D 4 HOH A 82 423 82 HOH TIP . D 4 HOH A 83 424 83 HOH TIP . D 4 HOH A 84 425 84 HOH TIP . D 4 HOH A 85 426 85 HOH TIP . D 4 HOH A 86 427 86 HOH TIP . D 4 HOH A 87 428 87 HOH TIP . D 4 HOH A 88 429 88 HOH TIP . D 4 HOH A 89 430 89 HOH TIP . D 4 HOH A 90 431 90 HOH TIP . D 4 HOH A 91 432 91 HOH TIP . D 4 HOH A 92 433 92 HOH TIP . D 4 HOH A 93 434 93 HOH TIP . D 4 HOH A 94 435 94 HOH TIP . D 4 HOH A 95 436 95 HOH TIP . D 4 HOH A 96 437 96 HOH TIP . D 4 HOH A 97 438 97 HOH TIP . D 4 HOH A 98 439 98 HOH TIP . D 4 HOH A 99 440 99 HOH TIP . D 4 HOH A 100 441 100 HOH TIP . D 4 HOH A 101 442 101 HOH TIP . D 4 HOH A 102 443 102 HOH TIP . D 4 HOH A 103 444 103 HOH TIP . D 4 HOH A 104 445 104 HOH TIP . D 4 HOH A 105 446 105 HOH TIP . D 4 HOH A 106 447 106 HOH TIP . D 4 HOH A 107 448 107 HOH TIP . D 4 HOH A 108 449 108 HOH TIP . D 4 HOH A 109 450 109 HOH TIP . D 4 HOH A 110 451 110 HOH TIP . D 4 HOH A 111 452 111 HOH TIP . D 4 HOH A 112 453 112 HOH TIP . D 4 HOH A 113 454 113 HOH TIP . D 4 HOH A 114 455 114 HOH TIP . D 4 HOH A 115 456 115 HOH TIP . D 4 HOH A 116 457 116 HOH TIP . D 4 HOH A 117 458 117 HOH TIP . D 4 HOH A 118 459 118 HOH TIP . D 4 HOH A 119 460 119 HOH TIP . D 4 HOH A 120 461 120 HOH TIP . D 4 HOH A 121 462 121 HOH TIP . D 4 HOH A 122 463 122 HOH TIP . D 4 HOH A 123 464 123 HOH TIP . D 4 HOH A 124 465 124 HOH TIP . D 4 HOH A 125 466 125 HOH TIP . D 4 HOH A 126 467 126 HOH TIP . D 4 HOH A 127 468 127 HOH TIP . D 4 HOH A 128 469 128 HOH TIP . D 4 HOH A 129 470 129 HOH TIP . D 4 HOH A 130 471 130 HOH TIP . D 4 HOH A 131 472 131 HOH TIP . D 4 HOH A 132 473 132 HOH TIP . D 4 HOH A 133 474 133 HOH TIP . D 4 HOH A 134 475 134 HOH TIP . D 4 HOH A 135 476 135 HOH TIP . D 4 HOH A 136 477 136 HOH TIP . D 4 HOH A 137 478 137 HOH TIP . D 4 HOH A 138 479 138 HOH TIP . D 4 HOH A 139 480 139 HOH TIP . D 4 HOH A 140 481 140 HOH TIP . D 4 HOH A 141 482 141 HOH TIP . D 4 HOH A 142 483 142 HOH TIP . D 4 HOH A 143 484 143 HOH TIP . D 4 HOH A 144 485 144 HOH TIP . D 4 HOH A 145 486 145 HOH TIP . D 4 HOH A 146 487 146 HOH TIP . D 4 HOH A 147 488 147 HOH TIP . D 4 HOH A 148 489 148 HOH TIP . D 4 HOH A 149 490 149 HOH TIP . D 4 HOH A 150 491 150 HOH TIP . D 4 HOH A 151 492 151 HOH TIP . D 4 HOH A 152 493 152 HOH TIP . D 4 HOH A 153 494 153 HOH TIP . D 4 HOH A 154 495 154 HOH TIP . D 4 HOH A 155 496 155 HOH TIP . D 4 HOH A 156 497 156 HOH TIP . D 4 HOH A 157 498 157 HOH TIP . D 4 HOH A 158 499 158 HOH TIP . D 4 HOH A 159 500 159 HOH TIP . D 4 HOH A 160 501 160 HOH TIP . D 4 HOH A 161 502 161 HOH TIP . D 4 HOH A 162 503 162 HOH TIP . D 4 HOH A 163 504 163 HOH TIP . D 4 HOH A 164 505 164 HOH TIP . D 4 HOH A 165 506 165 HOH TIP . D 4 HOH A 166 507 166 HOH TIP . D 4 HOH A 167 508 167 HOH TIP . D 4 HOH A 168 509 168 HOH TIP . D 4 HOH A 169 510 169 HOH TIP . D 4 HOH A 170 511 170 HOH TIP . D 4 HOH A 171 512 171 HOH TIP . D 4 HOH A 172 513 172 HOH TIP . D 4 HOH A 173 514 173 HOH TIP . D 4 HOH A 174 515 174 HOH TIP . D 4 HOH A 175 516 175 HOH TIP . D 4 HOH A 176 517 176 HOH TIP . D 4 HOH A 177 518 177 HOH TIP . D 4 HOH A 178 519 178 HOH TIP . D 4 HOH A 179 520 179 HOH TIP . D 4 HOH A 180 521 180 HOH TIP . D 4 HOH A 181 522 181 HOH TIP . D 4 HOH A 182 523 182 HOH TIP . D 4 HOH A 183 524 183 HOH TIP . D 4 HOH A 184 525 184 HOH TIP . D 4 HOH A 185 526 185 HOH TIP . D 4 HOH A 186 527 186 HOH TIP . D 4 HOH A 187 528 187 HOH TIP . D 4 HOH A 188 529 188 HOH TIP . D 4 HOH A 189 530 189 HOH TIP . D 4 HOH A 190 531 190 HOH TIP . D 4 HOH A 191 532 191 HOH TIP . D 4 HOH A 192 533 192 HOH TIP . D 4 HOH A 193 534 193 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA PA9 . . . B 2 108.852 42.363 82.532 1 33.6 ? CA PA9 345 A 1 HETATM 2 C CB PA9 . . . B 2 108.596 43.462 83.57 1 35.7 ? CB PA9 345 A 1 HETATM 3 C CG PA9 . . . B 2 107.235 44.106 83.487 1 37.1 ? CG PA9 345 A 1 HETATM 4 C CD PA9 . . . B 2 107.136 45.317 84.394 1 29.57 ? CD PA9 345 A 1 HETATM 5 C C PA9 . . . B 2 108.922 42.947 81.115 1 33.95 ? C PA9 345 A 1 HETATM 6 O O PA9 . . . B 2 107.887 43.473 80.649 1 33.49 ? O PA9 345 A 1 HETATM 7 O OXT PA9 . . . B 2 110.006 42.882 80.488 1 29.37 ? OXT PA9 345 A 1 HETATM 8 C C1 PA9 . . . B 2 110.681 40.625 82.521 1 33.1 ? C1 PA9 345 A 1 HETATM 9 O O1 PA9 . . . B 2 110.091 39.843 81.78 1 33.15 ? O1 PA9 345 A 1 HETATM 10 P P PA9 . . . B 2 106.246 42.778 88.46 1 25.43 ? P PA9 345 A 1 HETATM 11 O O1P PA9 . . . B 2 106.638 41.869 87.236 1 25.8 ? O1P PA9 345 A 1 HETATM 12 O O2P PA9 . . . B 2 104.675 42.781 88.721 1 24.49 ? O2P PA9 345 A 1 HETATM 13 O O3P PA9 . . . B 2 107.057 42.326 89.779 1 26.79 ? O3P PA9 345 A 1 HETATM 14 N N1 PA9 . . . B 2 110.153 41.789 82.884 1 32.38 ? N1 PA9 345 A 1 HETATM 15 C C2 PA9 . . . B 2 112.06 40.373 83.106 1 34.14 ? C2 PA9 345 A 1 HETATM 16 N N2 PA9 . . . B 2 107.3 44.99 85.809 1 29.41 ? N2 PA9 345 A 1 HETATM 17 C C3 PA9 . . . B 2 106.299 44.808 86.667 1 26.91 ? C3 PA9 345 A 1 HETATM 18 O O2 PA9 . . . B 2 105.107 44.899 86.352 1 24.02 ? O2 PA9 345 A 1 HETATM 19 C C4 PA9 . . . B 2 106.702 44.483 88.084 1 25.51 ? C4 PA9 345 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #