data_3M67 # _model_server_result.job_id B37QQiVmd2RK5WZResHVbQ _model_server_result.datetime_utc '2024-11-14 17:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":265}' # _entry.id 3M67 # _exptl.entry_id 3M67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.43 _cell.angle_gamma 90 _cell.entry_id 3M67 _cell.length_a 41.972 _cell.length_b 41.007 _cell.length_c 71.681 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 3M67 _atom_sites.fract_transf_matrix[1][1] 0.023825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006131 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E36 A 1 262 1 E36 E36 . C 3 ZN A 1 263 1 ZN ZN . D 4 DMS A 1 264 1 DMS DMS . E 4 DMS A 1 265 2 DMS DMS . F 5 HOH A 1 126 126 HOH HOH . F 5 HOH A 2 266 1 HOH HOH . F 5 HOH A 3 267 2 HOH HOH . F 5 HOH A 4 268 3 HOH HOH . F 5 HOH A 5 269 4 HOH HOH . F 5 HOH A 6 270 5 HOH HOH . F 5 HOH A 7 271 6 HOH HOH . F 5 HOH A 8 272 7 HOH HOH . F 5 HOH A 9 273 8 HOH HOH . F 5 HOH A 10 274 9 HOH HOH . F 5 HOH A 11 275 10 HOH HOH . F 5 HOH A 12 276 11 HOH HOH . F 5 HOH A 13 277 12 HOH HOH . F 5 HOH A 14 278 13 HOH HOH . F 5 HOH A 15 279 14 HOH HOH . F 5 HOH A 16 280 15 HOH HOH . F 5 HOH A 17 281 16 HOH HOH . F 5 HOH A 18 282 17 HOH HOH . F 5 HOH A 19 283 18 HOH HOH . F 5 HOH A 20 284 19 HOH HOH . F 5 HOH A 21 285 20 HOH HOH . F 5 HOH A 22 286 21 HOH HOH . F 5 HOH A 23 287 22 HOH HOH . F 5 HOH A 24 288 23 HOH HOH . F 5 HOH A 25 289 24 HOH HOH . F 5 HOH A 26 290 25 HOH HOH . F 5 HOH A 27 291 26 HOH HOH . F 5 HOH A 28 292 27 HOH HOH . F 5 HOH A 29 293 28 HOH HOH . F 5 HOH A 30 294 29 HOH HOH . F 5 HOH A 31 295 30 HOH HOH . F 5 HOH A 32 296 31 HOH HOH . F 5 HOH A 33 297 32 HOH HOH . F 5 HOH A 34 298 33 HOH HOH . F 5 HOH A 35 299 34 HOH HOH . F 5 HOH A 36 300 35 HOH HOH . F 5 HOH A 37 301 36 HOH HOH . F 5 HOH A 38 302 37 HOH HOH . F 5 HOH A 39 303 38 HOH HOH . F 5 HOH A 40 304 39 HOH HOH . F 5 HOH A 41 305 40 HOH HOH . F 5 HOH A 42 306 41 HOH HOH . F 5 HOH A 43 307 42 HOH HOH . F 5 HOH A 44 308 43 HOH HOH . F 5 HOH A 45 309 44 HOH HOH . F 5 HOH A 46 310 45 HOH HOH . F 5 HOH A 47 311 46 HOH HOH . F 5 HOH A 48 312 47 HOH HOH . F 5 HOH A 49 313 48 HOH HOH . F 5 HOH A 50 314 49 HOH HOH . F 5 HOH A 51 315 50 HOH HOH . F 5 HOH A 52 316 51 HOH HOH . F 5 HOH A 53 317 52 HOH HOH . F 5 HOH A 54 318 53 HOH HOH . F 5 HOH A 55 319 54 HOH HOH . F 5 HOH A 56 320 55 HOH HOH . F 5 HOH A 57 321 56 HOH HOH . F 5 HOH A 58 322 57 HOH HOH . F 5 HOH A 59 323 58 HOH HOH . F 5 HOH A 60 324 59 HOH HOH . F 5 HOH A 61 325 60 HOH HOH . F 5 HOH A 62 326 61 HOH HOH . F 5 HOH A 63 327 62 HOH HOH . F 5 HOH A 64 328 63 HOH HOH . F 5 HOH A 65 329 64 HOH HOH . F 5 HOH A 66 330 65 HOH HOH . F 5 HOH A 67 331 66 HOH HOH . F 5 HOH A 68 332 67 HOH HOH . F 5 HOH A 69 333 68 HOH HOH . F 5 HOH A 70 334 69 HOH HOH . F 5 HOH A 71 335 70 HOH HOH . F 5 HOH A 72 336 71 HOH HOH . F 5 HOH A 73 337 72 HOH HOH . F 5 HOH A 74 338 73 HOH HOH . F 5 HOH A 75 339 74 HOH HOH . F 5 HOH A 76 340 75 HOH HOH . F 5 HOH A 77 341 76 HOH HOH . F 5 HOH A 78 342 77 HOH HOH . F 5 HOH A 79 343 78 HOH HOH . F 5 HOH A 80 344 79 HOH HOH . F 5 HOH A 81 345 80 HOH HOH . F 5 HOH A 82 346 81 HOH HOH . F 5 HOH A 83 347 82 HOH HOH . F 5 HOH A 84 348 83 HOH HOH . F 5 HOH A 85 349 84 HOH HOH . F 5 HOH A 86 350 85 HOH HOH . F 5 HOH A 87 351 86 HOH HOH . F 5 HOH A 88 352 87 HOH HOH . F 5 HOH A 89 353 88 HOH HOH . F 5 HOH A 90 354 89 HOH HOH . F 5 HOH A 91 355 90 HOH HOH . F 5 HOH A 92 356 91 HOH HOH . F 5 HOH A 93 357 92 HOH HOH . F 5 HOH A 94 358 93 HOH HOH . F 5 HOH A 95 359 94 HOH HOH . F 5 HOH A 96 360 95 HOH HOH . F 5 HOH A 97 361 96 HOH HOH . F 5 HOH A 98 362 97 HOH HOH . F 5 HOH A 99 363 98 HOH HOH . F 5 HOH A 100 364 99 HOH HOH . F 5 HOH A 101 365 100 HOH HOH . F 5 HOH A 102 366 101 HOH HOH . F 5 HOH A 103 367 102 HOH HOH . F 5 HOH A 104 368 103 HOH HOH . F 5 HOH A 105 369 104 HOH HOH . F 5 HOH A 106 370 105 HOH HOH . F 5 HOH A 107 371 106 HOH HOH . F 5 HOH A 108 372 107 HOH HOH . F 5 HOH A 109 373 108 HOH HOH . F 5 HOH A 110 374 109 HOH HOH . F 5 HOH A 111 375 110 HOH HOH . F 5 HOH A 112 376 111 HOH HOH . F 5 HOH A 113 377 112 HOH HOH . F 5 HOH A 114 378 113 HOH HOH . F 5 HOH A 115 379 114 HOH HOH . F 5 HOH A 116 380 115 HOH HOH . F 5 HOH A 117 381 116 HOH HOH . F 5 HOH A 118 382 117 HOH HOH . F 5 HOH A 119 383 118 HOH HOH . F 5 HOH A 120 384 119 HOH HOH . F 5 HOH A 121 385 120 HOH HOH . F 5 HOH A 122 386 121 HOH HOH . F 5 HOH A 123 387 122 HOH HOH . F 5 HOH A 124 388 123 HOH HOH . F 5 HOH A 125 389 124 HOH HOH . F 5 HOH A 126 390 125 HOH HOH . F 5 HOH A 127 391 127 HOH HOH . F 5 HOH A 128 392 128 HOH HOH . F 5 HOH A 129 393 129 HOH HOH . F 5 HOH A 130 394 130 HOH HOH . F 5 HOH A 131 395 131 HOH HOH . F 5 HOH A 132 396 132 HOH HOH . F 5 HOH A 133 397 133 HOH HOH . F 5 HOH A 134 398 134 HOH HOH . F 5 HOH A 135 399 135 HOH HOH . F 5 HOH A 136 400 136 HOH HOH . F 5 HOH A 137 401 137 HOH HOH . F 5 HOH A 138 402 138 HOH HOH . F 5 HOH A 139 403 139 HOH HOH . F 5 HOH A 140 404 140 HOH HOH . F 5 HOH A 141 405 141 HOH HOH . F 5 HOH A 142 406 142 HOH HOH . F 5 HOH A 143 407 143 HOH HOH . F 5 HOH A 144 408 144 HOH HOH . F 5 HOH A 145 409 145 HOH HOH . F 5 HOH A 146 410 146 HOH HOH . F 5 HOH A 147 411 147 HOH HOH . F 5 HOH A 148 412 148 HOH HOH . F 5 HOH A 149 413 149 HOH HOH . F 5 HOH A 150 414 150 HOH HOH . F 5 HOH A 151 415 151 HOH HOH . F 5 HOH A 152 416 152 HOH HOH . F 5 HOH A 153 417 153 HOH HOH . F 5 HOH A 154 418 155 HOH HOH . F 5 HOH A 155 419 156 HOH HOH . F 5 HOH A 156 420 157 HOH HOH . F 5 HOH A 157 421 158 HOH HOH . F 5 HOH A 158 422 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 -5.626 7.354 10.982 1 36.04 ? S DMS 265 A 1 HETATM 2 O O DMS . . . E 4 -6.914 6.304 10.4 1 35.44 ? O DMS 265 A 1 HETATM 3 C C1 DMS . . . E 4 -4.189 6.951 9.937 1 37.21 ? C1 DMS 265 A 1 HETATM 4 C C2 DMS . . . E 4 -5.831 9.049 10.37 1 35.68 ? C2 DMS 265 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #