data_3M6F # _model_server_result.job_id djftwL7INMMnuqH9UI96XQ _model_server_result.datetime_utc '2024-12-22 06:02:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3M6F # _exptl.entry_id 3M6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non-7-yl]pyridine-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M6F _cell.length_a 40.6 _cell.length_b 63.6 _cell.length_c 63.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H19 Cl2 N5 O4' _chem_comp.formula_weight 536.366 _chem_comp.id BJZ _chem_comp.mon_nstd_flag . _chem_comp.name '6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non-7-yl]pyridine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL56 C1 BJZ sing 70 n n C2 C1 BJZ doub 71 n y C1 C8 BJZ sing 72 n y C2 C4 BJZ sing 73 n y C2 H2 BJZ sing 74 n n N11 C4 BJZ sing 75 n n C4 C5 BJZ doub 76 n y C5 C7 BJZ sing 77 n y C5 H5 BJZ sing 78 n n C8 C7 BJZ doub 79 n y C7 CL10 BJZ sing 80 n n C8 H8 BJZ sing 81 n n C15 N11 BJZ sing 82 n n N11 C12 BJZ sing 83 n n N13 C12 BJZ sing 84 n n C12 O55 BJZ doub 85 n n C14 N13 BJZ sing 86 n n N13 C51 BJZ sing 87 n n C24 C14 BJZ sing 88 n n C17 C14 BJZ sing 89 n n C14 C15 BJZ sing 90 n n O16 C15 BJZ doub 91 n n N20 C17 BJZ sing 92 n n C17 H17 BJZ sing 93 n n C17 H17A BJZ sing 94 n n C38 N20 BJZ sing 95 n n C21 N20 BJZ sing 96 n n C21 C24 BJZ sing 97 n n C21 H21 BJZ sing 98 n n C21 H21A BJZ sing 99 n n C26 C24 BJZ sing 100 n n C24 H24 BJZ sing 101 n n C34 C26 BJZ doub 102 n y C26 C27 BJZ sing 103 n y C27 C29 BJZ doub 104 n y C27 H27 BJZ sing 105 n n C31 C29 BJZ sing 106 n y C29 H29 BJZ sing 107 n n C32 C31 BJZ doub 108 n y C31 C36 BJZ sing 109 n n C34 C32 BJZ sing 110 n y C32 H32 BJZ sing 111 n n C34 H34 BJZ sing 112 n n C36 N37 BJZ trip 113 n n C45 C38 BJZ doub 114 n y C38 N39 BJZ sing 115 n y C40 N39 BJZ doub 116 n y C42 C40 BJZ sing 117 n y C40 H40 BJZ sing 118 n n C47 C42 BJZ sing 119 n n C43 C42 BJZ doub 120 n y C43 C45 BJZ sing 121 n y C43 H43 BJZ sing 122 n n C45 H45 BJZ sing 123 n n O48 C47 BJZ doub 124 n n C47 O49 BJZ sing 125 n n O49 HO49 BJZ sing 126 n n C51 H51 BJZ sing 127 n n C51 H51A BJZ sing 128 n n C51 H51B BJZ sing 129 n n # _atom_sites.entry_id 3M6F _atom_sites.fract_transf_matrix[1][1] 0.024631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BJZ A 1 1 1 BJZ BJZ . C 3 NO3 A 1 401 401 NO3 NO3 . D 4 HOH A 1 402 402 HOH HOH . D 4 HOH A 2 403 403 HOH HOH . D 4 HOH A 3 404 404 HOH HOH . D 4 HOH A 4 405 405 HOH HOH . D 4 HOH A 5 406 406 HOH HOH . D 4 HOH A 6 407 407 HOH HOH . D 4 HOH A 7 408 408 HOH HOH . D 4 HOH A 8 409 409 HOH HOH . D 4 HOH A 9 410 410 HOH HOH . D 4 HOH A 10 411 411 HOH HOH . D 4 HOH A 11 412 412 HOH HOH . D 4 HOH A 12 413 413 HOH HOH . D 4 HOH A 13 414 414 HOH HOH . D 4 HOH A 14 415 415 HOH HOH . D 4 HOH A 15 416 416 HOH HOH . D 4 HOH A 16 417 417 HOH HOH . D 4 HOH A 17 418 418 HOH HOH . D 4 HOH A 18 419 419 HOH HOH . D 4 HOH A 19 420 420 HOH HOH . D 4 HOH A 20 421 421 HOH HOH . D 4 HOH A 21 422 422 HOH HOH . D 4 HOH A 22 423 423 HOH HOH . D 4 HOH A 23 424 424 HOH HOH . D 4 HOH A 24 425 425 HOH HOH . D 4 HOH A 25 426 426 HOH HOH . D 4 HOH A 26 427 427 HOH HOH . D 4 HOH A 27 428 428 HOH HOH . D 4 HOH A 28 429 429 HOH HOH . D 4 HOH A 29 430 430 HOH HOH . D 4 HOH A 30 431 431 HOH HOH . D 4 HOH A 31 432 432 HOH HOH . D 4 HOH A 32 433 433 HOH HOH . D 4 HOH A 33 434 434 HOH HOH . D 4 HOH A 34 435 435 HOH HOH . D 4 HOH A 35 436 436 HOH HOH . D 4 HOH A 36 437 437 HOH HOH . D 4 HOH A 37 438 438 HOH HOH . D 4 HOH A 38 439 439 HOH HOH . D 4 HOH A 39 440 440 HOH HOH . D 4 HOH A 40 441 441 HOH HOH . D 4 HOH A 41 442 442 HOH HOH . D 4 HOH A 42 443 443 HOH HOH . D 4 HOH A 43 444 444 HOH HOH . D 4 HOH A 44 445 445 HOH HOH . D 4 HOH A 45 446 446 HOH HOH . D 4 HOH A 46 447 447 HOH HOH . D 4 HOH A 47 448 448 HOH HOH . D 4 HOH A 48 449 449 HOH HOH . D 4 HOH A 49 450 450 HOH HOH . D 4 HOH A 50 451 451 HOH HOH . D 4 HOH A 51 452 452 HOH HOH . D 4 HOH A 52 453 453 HOH HOH . D 4 HOH A 53 454 454 HOH HOH . D 4 HOH A 54 455 455 HOH HOH . D 4 HOH A 55 456 456 HOH HOH . D 4 HOH A 56 457 457 HOH HOH . D 4 HOH A 57 458 458 HOH HOH . D 4 HOH A 58 459 459 HOH HOH . D 4 HOH A 59 460 460 HOH HOH . D 4 HOH A 60 461 461 HOH HOH . D 4 HOH A 61 462 462 HOH HOH . D 4 HOH A 62 463 463 HOH HOH . D 4 HOH A 63 464 464 HOH HOH . D 4 HOH A 64 465 465 HOH HOH . D 4 HOH A 65 466 466 HOH HOH . D 4 HOH A 66 467 467 HOH HOH . D 4 HOH A 67 468 468 HOH HOH . D 4 HOH A 68 469 469 HOH HOH . D 4 HOH A 69 470 470 HOH HOH . D 4 HOH A 70 471 471 HOH HOH . D 4 HOH A 71 472 472 HOH HOH . D 4 HOH A 72 473 473 HOH HOH . D 4 HOH A 73 474 474 HOH HOH . D 4 HOH A 74 475 475 HOH HOH . D 4 HOH A 75 476 476 HOH HOH . D 4 HOH A 76 477 477 HOH HOH . D 4 HOH A 77 478 478 HOH HOH . D 4 HOH A 78 479 479 HOH HOH . D 4 HOH A 79 480 480 HOH HOH . D 4 HOH A 80 481 481 HOH HOH . D 4 HOH A 81 482 482 HOH HOH . D 4 HOH A 82 483 483 HOH HOH . D 4 HOH A 83 484 484 HOH HOH . D 4 HOH A 84 485 485 HOH HOH . D 4 HOH A 85 486 486 HOH HOH . D 4 HOH A 86 487 487 HOH HOH . D 4 HOH A 87 488 488 HOH HOH . D 4 HOH A 88 489 489 HOH HOH . D 4 HOH A 89 490 490 HOH HOH . D 4 HOH A 90 491 491 HOH HOH . D 4 HOH A 91 492 492 HOH HOH . D 4 HOH A 92 493 493 HOH HOH . D 4 HOH A 93 494 494 HOH HOH . D 4 HOH A 94 495 495 HOH HOH . D 4 HOH A 95 496 496 HOH HOH . D 4 HOH A 96 497 497 HOH HOH . D 4 HOH A 97 498 498 HOH HOH . D 4 HOH A 98 499 499 HOH HOH . D 4 HOH A 99 500 500 HOH HOH . D 4 HOH A 100 501 501 HOH HOH . D 4 HOH A 101 502 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BJZ . . . B 2 -5.974 -0.355 28.407 1 15.16 ? C1 BJZ 1 A 1 HETATM 2 C C2 BJZ . . . B 2 -7.161 0.284 27.98 1 13.93 ? C2 BJZ 1 A 1 HETATM 3 C C4 BJZ . . . B 2 -7.872 1.123 28.896 1 14.05 ? C4 BJZ 1 A 1 HETATM 4 C C5 BJZ . . . B 2 -7.327 1.33 30.176 1 13.94 ? C5 BJZ 1 A 1 HETATM 5 C C7 BJZ . . . B 2 -6.14 0.688 30.564 1 15.69 ? C7 BJZ 1 A 1 HETATM 6 C C8 BJZ . . . B 2 -5.457 -0.173 29.695 1 14.65 ? C8 BJZ 1 A 1 HETATM 7 CL CL10 BJZ . . . B 2 -5.516 0.992 32.173 1 16.39 ? CL10 BJZ 1 A 1 HETATM 8 N N11 BJZ . . . B 2 -9.104 1.645 28.579 1 13.56 ? N11 BJZ 1 A 1 HETATM 9 C C12 BJZ . . . B 2 -10.219 1.57 29.356 1 14.5 ? C12 BJZ 1 A 1 HETATM 10 N N13 BJZ . . . B 2 -11.274 2.075 28.698 1 15.3 ? N13 BJZ 1 A 1 HETATM 11 C C14 BJZ . . . B 2 -10.924 2.456 27.335 1 15.12 ? C14 BJZ 1 A 1 HETATM 12 C C15 BJZ . . . B 2 -9.4 2.209 27.377 1 15.76 ? C15 BJZ 1 A 1 HETATM 13 O O16 BJZ . . . B 2 -8.63 2.483 26.451 1 16.85 ? O16 BJZ 1 A 1 HETATM 14 C C17 BJZ . . . B 2 -11.215 3.913 26.938 1 17.04 ? C17 BJZ 1 A 1 HETATM 15 N N20 BJZ . . . B 2 -11.599 3.783 25.529 1 16.86 ? N20 BJZ 1 A 1 HETATM 16 C C21 BJZ . . . B 2 -11.455 2.427 24.997 1 16.04 ? C21 BJZ 1 A 1 HETATM 17 C C24 BJZ . . . B 2 -11.559 1.573 26.249 1 16.97 ? C24 BJZ 1 A 1 HETATM 18 C C26 BJZ . . . B 2 -11.003 0.158 26.176 1 16.25 ? C26 BJZ 1 A 1 HETATM 19 C C27 BJZ . . . B 2 -11.544 -0.819 27.031 1 18.03 ? C27 BJZ 1 A 1 HETATM 20 C C29 BJZ . . . B 2 -10.965 -2.099 27.12 1 18.15 ? C29 BJZ 1 A 1 HETATM 21 C C31 BJZ . . . B 2 -9.864 -2.413 26.302 1 18.1 ? C31 BJZ 1 A 1 HETATM 22 C C32 BJZ . . . B 2 -9.329 -1.477 25.415 1 18.72 ? C32 BJZ 1 A 1 HETATM 23 C C34 BJZ . . . B 2 -9.91 -0.197 25.337 1 19.19 ? C34 BJZ 1 A 1 HETATM 24 C C36 BJZ . . . B 2 -9.323 -3.742 26.349 1 20.14 ? C36 BJZ 1 A 1 HETATM 25 N N37 BJZ . . . B 2 -8.879 -4.811 26.393 1 21.94 ? N37 BJZ 1 A 1 HETATM 26 C C38 BJZ . . . B 2 -12.12 4.826 24.786 1 18.24 ? C38 BJZ 1 A 1 HETATM 27 N N39 BJZ . . . B 2 -12.414 6.005 25.409 1 19.49 ? N39 BJZ 1 A 1 HETATM 28 C C40 BJZ . . . B 2 -12.924 7.048 24.694 1 20.69 ? C40 BJZ 1 A 1 HETATM 29 C C42 BJZ . . . B 2 -13.142 6.981 23.31 1 21.7 ? C42 BJZ 1 A 1 HETATM 30 C C43 BJZ . . . B 2 -12.827 5.778 22.661 1 21.26 ? C43 BJZ 1 A 1 HETATM 31 C C45 BJZ . . . B 2 -12.325 4.687 23.394 1 19.09 ? C45 BJZ 1 A 1 HETATM 32 C C47 BJZ . . . B 2 -13.669 8.141 22.567 1 23.35 ? C47 BJZ 1 A 1 HETATM 33 O O48 BJZ . . . B 2 -13.764 8.15 21.378 1 24.81 ? O48 BJZ 1 A 1 HETATM 34 O O49 BJZ . . . B 2 -14.013 9.179 23.339 1 23.04 ? O49 BJZ 1 A 1 HETATM 35 C C51 BJZ . . . B 2 -12.645 2.128 29.25 1 16.68 ? C51 BJZ 1 A 1 HETATM 36 O O55 BJZ . . . B 2 -10.3 1.11 30.491 1 12.47 ? O55 BJZ 1 A 1 HETATM 37 CL CL56 BJZ . . . B 2 -5.097 -1.371 27.331 1 16.79 ? CL56 BJZ 1 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #