data_3M6I # _model_server_result.job_id IzNORARKJIZfk7ZzhL4RBA _model_server_result.datetime_utc '2025-01-02 19:10:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 3M6I # _exptl.entry_id 3M6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M6I _cell.length_a 134.52 _cell.length_b 134.52 _cell.length_c 224.34 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3,4 B,F,G,H,J 2 1,5,3,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 134.52 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 134.52 0 0 5 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 6 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 53 A CYS 53 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A NE2 HIS 78 A HIS 78 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc3 A SG CYS 108 A CYS 108 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 A SG CYS 111 A CYS 111 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 A SG CYS 114 A CYS 114 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc6 A SG CYS 122 A CYS 122 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc7 B SG CYS 53 B CYS 53 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc8 B NE2 HIS 78 B HIS 78 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc9 B SG CYS 108 B CYS 108 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc10 B SG CYS 111 B CYS 111 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc11 B SG CYS 114 B CYS 114 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc12 B SG CYS 122 B CYS 122 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3M6I _atom_sites.fract_transf_matrix[1][1] 0.007434 _atom_sites.fract_transf_matrix[1][2] 0.004292 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004458 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 2 ZN A 1 402 402 ZN ZN . E 3 NAD A 1 501 501 NAD NAD . F 2 ZN B 1 401 401 ZN ZN . G 2 ZN B 1 402 402 ZN ZN . H 3 NAD B 1 501 501 NAD NAD . I 4 HOH A 1 364 2 HOH HOH . I 4 HOH A 2 365 5 HOH HOH . I 4 HOH A 3 366 6 HOH HOH . I 4 HOH A 4 367 7 HOH HOH . I 4 HOH A 5 368 8 HOH HOH . I 4 HOH A 6 369 11 HOH HOH . I 4 HOH A 7 370 13 HOH HOH . I 4 HOH A 8 371 14 HOH HOH . I 4 HOH A 9 372 15 HOH HOH . I 4 HOH A 10 373 16 HOH HOH . I 4 HOH A 11 374 18 HOH HOH . I 4 HOH A 12 375 19 HOH HOH . I 4 HOH A 13 376 20 HOH HOH . I 4 HOH A 14 377 22 HOH HOH . I 4 HOH A 15 378 24 HOH HOH . I 4 HOH A 16 379 26 HOH HOH . I 4 HOH A 17 380 29 HOH HOH . I 4 HOH A 18 381 31 HOH HOH . I 4 HOH A 19 382 32 HOH HOH . I 4 HOH A 20 383 37 HOH HOH . I 4 HOH A 21 384 41 HOH HOH . I 4 HOH A 22 385 44 HOH HOH . I 4 HOH A 23 386 45 HOH HOH . I 4 HOH A 24 387 47 HOH HOH . I 4 HOH A 25 388 49 HOH HOH . I 4 HOH A 26 389 52 HOH HOH . I 4 HOH A 27 390 54 HOH HOH . I 4 HOH A 28 391 55 HOH HOH . I 4 HOH A 29 392 56 HOH HOH . I 4 HOH A 30 393 58 HOH HOH . I 4 HOH A 31 394 59 HOH HOH . I 4 HOH A 32 395 61 HOH HOH . I 4 HOH A 33 396 62 HOH HOH . I 4 HOH A 34 397 65 HOH HOH . I 4 HOH A 35 398 66 HOH HOH . I 4 HOH A 36 399 67 HOH HOH . I 4 HOH A 37 400 68 HOH HOH . I 4 HOH A 38 403 69 HOH HOH . I 4 HOH A 39 404 70 HOH HOH . I 4 HOH A 40 405 71 HOH HOH . I 4 HOH A 41 406 73 HOH HOH . I 4 HOH A 42 407 75 HOH HOH . I 4 HOH A 43 408 76 HOH HOH . I 4 HOH A 44 409 77 HOH HOH . I 4 HOH A 45 410 78 HOH HOH . I 4 HOH A 46 411 82 HOH HOH . I 4 HOH A 47 412 83 HOH HOH . I 4 HOH A 48 413 84 HOH HOH . I 4 HOH A 49 414 85 HOH HOH . I 4 HOH A 50 415 86 HOH HOH . I 4 HOH A 51 416 87 HOH HOH . I 4 HOH A 52 417 88 HOH HOH . I 4 HOH A 53 418 90 HOH HOH . I 4 HOH A 54 419 93 HOH HOH . I 4 HOH A 55 420 94 HOH HOH . I 4 HOH A 56 421 95 HOH HOH . I 4 HOH A 57 422 96 HOH HOH . I 4 HOH A 58 423 97 HOH HOH . I 4 HOH A 59 424 98 HOH HOH . I 4 HOH A 60 425 100 HOH HOH . I 4 HOH A 61 426 102 HOH HOH . I 4 HOH A 62 427 104 HOH HOH . I 4 HOH A 63 428 105 HOH HOH . I 4 HOH A 64 429 107 HOH HOH . I 4 HOH A 65 430 108 HOH HOH . I 4 HOH A 66 431 109 HOH HOH . I 4 HOH A 67 432 110 HOH HOH . I 4 HOH A 68 433 111 HOH HOH . I 4 HOH A 69 434 117 HOH HOH . I 4 HOH A 70 435 118 HOH HOH . I 4 HOH A 71 436 120 HOH HOH . I 4 HOH A 72 437 121 HOH HOH . I 4 HOH A 73 438 123 HOH HOH . I 4 HOH A 74 439 125 HOH HOH . I 4 HOH A 75 440 126 HOH HOH . I 4 HOH A 76 441 127 HOH HOH . I 4 HOH A 77 442 130 HOH HOH . I 4 HOH A 78 443 132 HOH HOH . I 4 HOH A 79 444 136 HOH HOH . I 4 HOH A 80 445 137 HOH HOH . I 4 HOH A 81 446 139 HOH HOH . I 4 HOH A 82 447 140 HOH HOH . I 4 HOH A 83 448 144 HOH HOH . I 4 HOH A 84 449 145 HOH HOH . I 4 HOH A 85 450 148 HOH HOH . I 4 HOH A 86 451 151 HOH HOH . I 4 HOH A 87 452 153 HOH HOH . I 4 HOH A 88 453 154 HOH HOH . I 4 HOH A 89 454 155 HOH HOH . I 4 HOH A 90 455 158 HOH HOH . I 4 HOH A 91 456 160 HOH HOH . I 4 HOH A 92 457 166 HOH HOH . I 4 HOH A 93 458 168 HOH HOH . I 4 HOH A 94 459 170 HOH HOH . I 4 HOH A 95 460 171 HOH HOH . J 4 HOH B 1 364 1 HOH HOH . J 4 HOH B 2 365 3 HOH HOH . J 4 HOH B 3 366 4 HOH HOH . J 4 HOH B 4 367 9 HOH HOH . J 4 HOH B 5 368 10 HOH HOH . J 4 HOH B 6 369 12 HOH HOH . J 4 HOH B 7 370 17 HOH HOH . J 4 HOH B 8 371 23 HOH HOH . J 4 HOH B 9 372 25 HOH HOH . J 4 HOH B 10 373 27 HOH HOH . J 4 HOH B 11 374 28 HOH HOH . J 4 HOH B 12 375 30 HOH HOH . J 4 HOH B 13 376 34 HOH HOH . J 4 HOH B 14 377 38 HOH HOH . J 4 HOH B 15 378 39 HOH HOH . J 4 HOH B 16 379 40 HOH HOH . J 4 HOH B 17 380 42 HOH HOH . J 4 HOH B 18 381 43 HOH HOH . J 4 HOH B 19 382 48 HOH HOH . J 4 HOH B 20 383 50 HOH HOH . J 4 HOH B 21 384 51 HOH HOH . J 4 HOH B 22 385 53 HOH HOH . J 4 HOH B 23 386 60 HOH HOH . J 4 HOH B 24 387 63 HOH HOH . J 4 HOH B 25 388 64 HOH HOH . J 4 HOH B 26 389 72 HOH HOH . J 4 HOH B 27 390 74 HOH HOH . J 4 HOH B 28 391 79 HOH HOH . J 4 HOH B 29 392 81 HOH HOH . J 4 HOH B 30 393 89 HOH HOH . J 4 HOH B 31 394 91 HOH HOH . J 4 HOH B 32 395 92 HOH HOH . J 4 HOH B 33 396 101 HOH HOH . J 4 HOH B 34 397 112 HOH HOH . J 4 HOH B 35 398 113 HOH HOH . J 4 HOH B 36 399 114 HOH HOH . J 4 HOH B 37 400 116 HOH HOH . J 4 HOH B 38 403 122 HOH HOH . J 4 HOH B 39 404 124 HOH HOH . J 4 HOH B 40 405 129 HOH HOH . J 4 HOH B 41 406 131 HOH HOH . J 4 HOH B 42 407 133 HOH HOH . J 4 HOH B 43 408 134 HOH HOH . J 4 HOH B 44 409 135 HOH HOH . J 4 HOH B 45 410 141 HOH HOH . J 4 HOH B 46 411 142 HOH HOH . J 4 HOH B 47 412 143 HOH HOH . J 4 HOH B 48 413 157 HOH HOH . J 4 HOH B 49 414 165 HOH HOH . J 4 HOH B 50 415 169 HOH HOH . J 4 HOH B 51 416 173 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 69.706 _atom_site.Cartn_y -7.197 _atom_site.Cartn_z 22.814 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #