data_3M72 # _model_server_result.job_id 9oulbU_YZdV8xLVnb7R9mQ _model_server_result.datetime_utc '2024-10-19 02:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":315}' # _entry.id 3M72 # _exptl.entry_id 3M72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M72 _cell.length_a 95.731 _cell.length_b 95.731 _cell.length_c 136.14 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 47.8655 -82.905478 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 95.731 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3M72 _atom_sites.fract_transf_matrix[1][1] 0.010446 _atom_sites.fract_transf_matrix[1][2] 0.006031 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 315 315 BOG BOG . C 2 BOG A 1 316 316 BOG BOG . D 2 BOG A 1 317 317 BOG BOG . E 2 BOG A 1 318 318 BOG BOG . F 2 BOG A 1 319 319 BOG BOG . G 3 HOH A 1 320 320 HOH HOH . G 3 HOH A 2 321 321 HOH HOH . G 3 HOH A 3 322 322 HOH HOH . G 3 HOH A 4 323 323 HOH HOH . G 3 HOH A 5 324 324 HOH HOH . G 3 HOH A 6 325 325 HOH HOH . G 3 HOH A 7 326 326 HOH HOH . G 3 HOH A 8 327 327 HOH HOH . G 3 HOH A 9 328 328 HOH HOH . G 3 HOH A 10 329 329 HOH HOH . G 3 HOH A 11 330 330 HOH HOH . G 3 HOH A 12 331 331 HOH HOH . G 3 HOH A 13 332 332 HOH HOH . G 3 HOH A 14 333 333 HOH HOH . G 3 HOH A 15 334 334 HOH HOH . G 3 HOH A 16 335 335 HOH HOH . G 3 HOH A 17 336 336 HOH HOH . G 3 HOH A 18 337 337 HOH HOH . G 3 HOH A 19 338 338 HOH HOH . G 3 HOH A 20 339 339 HOH HOH . G 3 HOH A 21 340 340 HOH HOH . G 3 HOH A 22 341 341 HOH HOH . G 3 HOH A 23 342 342 HOH HOH . G 3 HOH A 24 343 343 HOH HOH . G 3 HOH A 25 344 344 HOH HOH . G 3 HOH A 26 345 345 HOH HOH . G 3 HOH A 27 346 346 HOH HOH . G 3 HOH A 28 347 347 HOH HOH . G 3 HOH A 29 348 348 HOH HOH . G 3 HOH A 30 349 349 HOH HOH . G 3 HOH A 31 350 350 HOH HOH . G 3 HOH A 32 351 351 HOH HOH . G 3 HOH A 33 352 352 HOH HOH . G 3 HOH A 34 353 353 HOH HOH . G 3 HOH A 35 354 354 HOH HOH . G 3 HOH A 36 355 355 HOH HOH . G 3 HOH A 37 356 356 HOH HOH . G 3 HOH A 38 358 358 HOH HOH . G 3 HOH A 39 359 359 HOH HOH . G 3 HOH A 40 360 360 HOH HOH . G 3 HOH A 41 361 361 HOH HOH . G 3 HOH A 42 362 362 HOH HOH . G 3 HOH A 43 363 363 HOH HOH . G 3 HOH A 44 364 364 HOH HOH . G 3 HOH A 45 365 365 HOH HOH . G 3 HOH A 46 366 366 HOH HOH . G 3 HOH A 47 367 367 HOH HOH . G 3 HOH A 48 368 368 HOH HOH . G 3 HOH A 49 369 369 HOH HOH . G 3 HOH A 50 370 370 HOH HOH . G 3 HOH A 51 371 371 HOH HOH . G 3 HOH A 52 372 372 HOH HOH . G 3 HOH A 53 373 373 HOH HOH . G 3 HOH A 54 374 374 HOH HOH . G 3 HOH A 55 375 375 HOH HOH . G 3 HOH A 56 376 376 HOH HOH . G 3 HOH A 57 377 377 HOH HOH . G 3 HOH A 58 378 378 HOH HOH . G 3 HOH A 59 379 379 HOH HOH . G 3 HOH A 60 380 380 HOH HOH . G 3 HOH A 61 381 381 HOH HOH . G 3 HOH A 62 382 382 HOH HOH . G 3 HOH A 63 383 383 HOH HOH . G 3 HOH A 64 384 384 HOH HOH . G 3 HOH A 65 385 385 HOH HOH . G 3 HOH A 66 386 386 HOH HOH . G 3 HOH A 67 387 387 HOH HOH . G 3 HOH A 68 388 388 HOH HOH . G 3 HOH A 69 389 389 HOH HOH . G 3 HOH A 70 390 390 HOH HOH . G 3 HOH A 71 391 391 HOH HOH . G 3 HOH A 72 392 392 HOH HOH . G 3 HOH A 73 393 393 HOH HOH . G 3 HOH A 74 394 394 HOH HOH . G 3 HOH A 75 395 395 HOH HOH . G 3 HOH A 76 396 396 HOH HOH . G 3 HOH A 77 397 397 HOH HOH . G 3 HOH A 78 398 398 HOH HOH . G 3 HOH A 79 399 399 HOH HOH . G 3 HOH A 80 400 400 HOH HOH . G 3 HOH A 81 401 401 HOH HOH . G 3 HOH A 82 402 402 HOH HOH . G 3 HOH A 83 403 403 HOH HOH . G 3 HOH A 84 404 404 HOH HOH . G 3 HOH A 85 405 405 HOH HOH . G 3 HOH A 86 406 406 HOH HOH . G 3 HOH A 87 407 407 HOH HOH . G 3 HOH A 88 408 408 HOH HOH . G 3 HOH A 89 409 409 HOH HOH . G 3 HOH A 90 410 410 HOH HOH . G 3 HOH A 91 411 411 HOH HOH . G 3 HOH A 92 412 412 HOH HOH . G 3 HOH A 93 413 413 HOH HOH . G 3 HOH A 94 414 414 HOH HOH . G 3 HOH A 95 415 415 HOH HOH . G 3 HOH A 96 416 416 HOH HOH . G 3 HOH A 97 417 417 HOH HOH . G 3 HOH A 98 418 418 HOH HOH . G 3 HOH A 99 419 419 HOH HOH . G 3 HOH A 100 420 420 HOH HOH . G 3 HOH A 101 421 421 HOH HOH . G 3 HOH A 102 422 422 HOH HOH . G 3 HOH A 103 424 424 HOH HOH . G 3 HOH A 104 425 425 HOH HOH . G 3 HOH A 105 426 426 HOH HOH . G 3 HOH A 106 427 427 HOH HOH . G 3 HOH A 107 428 428 HOH HOH . G 3 HOH A 108 429 429 HOH HOH . G 3 HOH A 109 430 430 HOH HOH . G 3 HOH A 110 431 431 HOH HOH . G 3 HOH A 111 432 432 HOH HOH . G 3 HOH A 112 433 433 HOH HOH . G 3 HOH A 113 434 434 HOH HOH . G 3 HOH A 114 435 435 HOH HOH . G 3 HOH A 115 436 436 HOH HOH . G 3 HOH A 116 437 437 HOH HOH . G 3 HOH A 117 438 438 HOH HOH . G 3 HOH A 118 439 439 HOH HOH . G 3 HOH A 119 440 440 HOH HOH . G 3 HOH A 120 441 441 HOH HOH . G 3 HOH A 121 442 442 HOH HOH . G 3 HOH A 122 443 443 HOH HOH . G 3 HOH A 123 444 444 HOH HOH . G 3 HOH A 124 445 445 HOH HOH . G 3 HOH A 125 446 446 HOH HOH . G 3 HOH A 126 447 447 HOH HOH . G 3 HOH A 127 448 448 HOH HOH . G 3 HOH A 128 449 449 HOH HOH . G 3 HOH A 129 450 450 HOH HOH . G 3 HOH A 130 451 451 HOH HOH . G 3 HOH A 131 452 452 HOH HOH . G 3 HOH A 132 453 453 HOH HOH . G 3 HOH A 133 454 454 HOH HOH . G 3 HOH A 134 455 455 HOH HOH . G 3 HOH A 135 456 456 HOH HOH . G 3 HOH A 136 457 457 HOH HOH . G 3 HOH A 137 458 458 HOH HOH . G 3 HOH A 138 459 459 HOH HOH . G 3 HOH A 139 460 460 HOH HOH . G 3 HOH A 140 461 461 HOH HOH . G 3 HOH A 141 462 462 HOH HOH . G 3 HOH A 142 463 463 HOH HOH . G 3 HOH A 143 464 464 HOH HOH . G 3 HOH A 144 465 465 HOH HOH . G 3 HOH A 145 466 466 HOH HOH . G 3 HOH A 146 467 467 HOH HOH . G 3 HOH A 147 468 468 HOH HOH . G 3 HOH A 148 469 469 HOH HOH . G 3 HOH A 149 470 470 HOH HOH . G 3 HOH A 150 471 471 HOH HOH . G 3 HOH A 151 472 472 HOH HOH . G 3 HOH A 152 473 473 HOH HOH . G 3 HOH A 153 474 474 HOH HOH . G 3 HOH A 154 475 475 HOH HOH . G 3 HOH A 155 476 476 HOH HOH . G 3 HOH A 156 477 477 HOH HOH . G 3 HOH A 157 478 478 HOH HOH . G 3 HOH A 158 479 479 HOH HOH . G 3 HOH A 159 480 480 HOH HOH . G 3 HOH A 160 481 481 HOH HOH . G 3 HOH A 161 482 482 HOH HOH . G 3 HOH A 162 483 483 HOH HOH . G 3 HOH A 163 484 484 HOH HOH . G 3 HOH A 164 485 485 HOH HOH . G 3 HOH A 165 486 486 HOH HOH . G 3 HOH A 166 487 487 HOH HOH . G 3 HOH A 167 488 488 HOH HOH . G 3 HOH A 168 489 489 HOH HOH . G 3 HOH A 169 490 490 HOH HOH . G 3 HOH A 170 491 491 HOH HOH . G 3 HOH A 171 492 492 HOH HOH . G 3 HOH A 172 493 493 HOH HOH . G 3 HOH A 173 494 494 HOH HOH . G 3 HOH A 174 495 495 HOH HOH . G 3 HOH A 175 496 496 HOH HOH . G 3 HOH A 176 497 497 HOH HOH . G 3 HOH A 177 498 498 HOH HOH . G 3 HOH A 178 499 499 HOH HOH . G 3 HOH A 179 500 500 HOH HOH . G 3 HOH A 180 501 501 HOH HOH . G 3 HOH A 181 502 502 HOH HOH . G 3 HOH A 182 503 503 HOH HOH . G 3 HOH A 183 504 504 HOH HOH . G 3 HOH A 184 505 505 HOH HOH . G 3 HOH A 185 507 507 HOH HOH . G 3 HOH A 186 508 508 HOH HOH . G 3 HOH A 187 509 509 HOH HOH . G 3 HOH A 188 510 510 HOH HOH . G 3 HOH A 189 511 511 HOH HOH . G 3 HOH A 190 512 512 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 48.385 -24.936 8.645 1 19.24 ? C1 BOG 315 A 1 HETATM 2 O O1 BOG . . . B 2 48.036 -24.467 7.359 1 20.86 ? O1 BOG 315 A 1 HETATM 3 C C2 BOG . . . B 2 49.702 -24.513 9.186 1 20.85 ? C2 BOG 315 A 1 HETATM 4 O O2 BOG . . . B 2 50.934 -25.219 8.719 1 24.72 ? O2 BOG 315 A 1 HETATM 5 C C3 BOG . . . B 2 49.451 -24.662 10.721 1 20.3 ? C3 BOG 315 A 1 HETATM 6 O O3 BOG . . . B 2 50.104 -23.796 11.674 1 25.89 ? O3 BOG 315 A 1 HETATM 7 C C4 BOG . . . B 2 48.141 -24.41 11.204 1 20.54 ? C4 BOG 315 A 1 HETATM 8 O O4 BOG . . . B 2 48.135 -24.365 12.609 1 27.69 ? O4 BOG 315 A 1 HETATM 9 C C5 BOG . . . B 2 47.023 -25.099 10.632 1 20.85 ? C5 BOG 315 A 1 HETATM 10 O O5 BOG . . . B 2 47.14 -24.912 9.224 1 23.8 ? O5 BOG 315 A 1 HETATM 11 C C6 BOG . . . B 2 45.652 -24.737 11.226 1 20.27 ? C6 BOG 315 A 1 HETATM 12 O O6 BOG . . . B 2 45.316 -23.329 11.417 1 23 ? O6 BOG 315 A 1 HETATM 13 C C1' BOG . . . B 2 47.565 -25.298 6.325 1 17.09 ? C1' BOG 315 A 1 HETATM 14 C C2' BOG . . . B 2 47.564 -24.532 5.041 1 15.79 ? C2' BOG 315 A 1 HETATM 15 C C3' BOG . . . B 2 47.167 -25.374 3.861 1 15.95 ? C3' BOG 315 A 1 HETATM 16 C C4' BOG . . . B 2 47.235 -24.676 2.559 1 16.33 ? C4' BOG 315 A 1 HETATM 17 C C5' BOG . . . B 2 46.529 -25.407 1.518 1 15.58 ? C5' BOG 315 A 1 HETATM 18 C C6' BOG . . . B 2 46.887 -24.975 0.182 1 16.66 ? C6' BOG 315 A 1 HETATM 19 C C7' BOG . . . B 2 45.802 -25.083 -0.77 1 15.96 ? C7' BOG 315 A 1 HETATM 20 C C8' BOG . . . B 2 46.197 -25.627 -2.092 1 18.02 ? C8' BOG 315 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #