data_3M7J # _model_server_result.job_id hSlhMpjL4WWG-vzubjGaiA _model_server_result.datetime_utc '2024-10-20 20:01:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":277}' # _entry.id 3M7J # _exptl.entry_id 3M7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M7J _cell.length_a 148.973 _cell.length_b 153.201 _cell.length_c 33.914 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 224 n n C1 O1 MMA sing 225 n n C1 O5 MMA sing 226 n n C1 H1 MMA sing 227 n n C2 C3 MMA sing 228 n n C2 O2 MMA sing 229 n n C2 H2 MMA sing 230 n n C3 C4 MMA sing 231 n n C3 O3 MMA sing 232 n n C3 H3 MMA sing 233 n n C4 C5 MMA sing 234 n n C4 O4 MMA sing 235 n n C4 H4 MMA sing 236 n n C5 C6 MMA sing 237 n n C5 O5 MMA sing 238 n n C5 H5 MMA sing 239 n n C6 O6 MMA sing 240 n n C6 H61 MMA sing 241 n n C6 H62 MMA sing 242 n n C7 O1 MMA sing 243 n n C7 H71 MMA sing 244 n n C7 H72 MMA sing 245 n n C7 H73 MMA sing 246 n n O2 HO2 MMA sing 247 n n O3 HO3 MMA sing 248 n n O4 HO4 MMA sing 249 n n O6 HO6 MMA sing 250 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 3M7J _atom_sites.fract_transf_matrix[1][1] 0.006713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MMA A 1 277 101 MMA MMA . D 2 MMA B 1 277 201 MMA MMA . E 3 HOH A 1 278 1 HOH HOH . E 3 HOH A 2 279 2 HOH HOH . E 3 HOH A 3 280 3 HOH HOH . E 3 HOH A 4 281 4 HOH HOH . E 3 HOH A 5 282 9 HOH HOH . E 3 HOH A 6 283 10 HOH HOH . E 3 HOH A 7 284 11 HOH HOH . E 3 HOH A 8 285 12 HOH HOH . E 3 HOH A 9 286 13 HOH HOH . E 3 HOH A 10 287 14 HOH HOH . E 3 HOH A 11 288 15 HOH HOH . E 3 HOH A 12 289 16 HOH HOH . E 3 HOH A 13 290 17 HOH HOH . E 3 HOH A 14 291 18 HOH HOH . E 3 HOH A 15 292 19 HOH HOH . E 3 HOH A 16 293 20 HOH HOH . E 3 HOH A 17 294 21 HOH HOH . E 3 HOH A 18 295 22 HOH HOH . E 3 HOH A 19 296 23 HOH HOH . E 3 HOH A 20 297 24 HOH HOH . E 3 HOH A 21 298 25 HOH HOH . E 3 HOH A 22 299 26 HOH HOH . E 3 HOH A 23 300 28 HOH HOH . E 3 HOH A 24 301 29 HOH HOH . E 3 HOH A 25 302 30 HOH HOH . E 3 HOH A 26 303 31 HOH HOH . E 3 HOH A 27 304 57 HOH HOH . E 3 HOH A 28 305 58 HOH HOH . E 3 HOH A 29 306 59 HOH HOH . E 3 HOH A 30 307 60 HOH HOH . E 3 HOH A 31 308 61 HOH HOH . E 3 HOH A 32 309 62 HOH HOH . E 3 HOH A 33 310 63 HOH HOH . E 3 HOH A 34 311 64 HOH HOH . E 3 HOH A 35 312 65 HOH HOH . E 3 HOH A 36 313 66 HOH HOH . E 3 HOH A 37 314 67 HOH HOH . E 3 HOH A 38 315 68 HOH HOH . E 3 HOH A 39 316 69 HOH HOH . E 3 HOH A 40 317 70 HOH HOH . E 3 HOH A 41 318 71 HOH HOH . E 3 HOH A 42 319 72 HOH HOH . E 3 HOH A 43 320 73 HOH HOH . E 3 HOH A 44 321 74 HOH HOH . E 3 HOH A 45 322 75 HOH HOH . E 3 HOH A 46 323 76 HOH HOH . E 3 HOH A 47 324 77 HOH HOH . E 3 HOH A 48 325 78 HOH HOH . E 3 HOH A 49 326 79 HOH HOH . E 3 HOH A 50 327 80 HOH HOH . E 3 HOH A 51 328 81 HOH HOH . E 3 HOH A 52 329 82 HOH HOH . E 3 HOH A 53 330 83 HOH HOH . E 3 HOH A 54 331 103 HOH HOH . E 3 HOH A 55 332 104 HOH HOH . E 3 HOH A 56 333 106 HOH HOH . E 3 HOH A 57 334 107 HOH HOH . E 3 HOH A 58 335 111 HOH HOH . E 3 HOH A 59 336 112 HOH HOH . E 3 HOH A 60 337 113 HOH HOH . F 3 HOH B 1 278 5 HOH HOH . F 3 HOH B 2 279 6 HOH HOH . F 3 HOH B 3 280 7 HOH HOH . F 3 HOH B 4 281 8 HOH HOH . F 3 HOH B 5 282 27 HOH HOH . F 3 HOH B 6 283 32 HOH HOH . F 3 HOH B 7 284 33 HOH HOH . F 3 HOH B 8 285 34 HOH HOH . F 3 HOH B 9 286 35 HOH HOH . F 3 HOH B 10 287 36 HOH HOH . F 3 HOH B 11 288 37 HOH HOH . F 3 HOH B 12 289 38 HOH HOH . F 3 HOH B 13 290 39 HOH HOH . F 3 HOH B 14 291 40 HOH HOH . F 3 HOH B 15 292 41 HOH HOH . F 3 HOH B 16 293 42 HOH HOH . F 3 HOH B 17 294 43 HOH HOH . F 3 HOH B 18 295 44 HOH HOH . F 3 HOH B 19 296 45 HOH HOH . F 3 HOH B 20 297 46 HOH HOH . F 3 HOH B 21 298 47 HOH HOH . F 3 HOH B 22 299 48 HOH HOH . F 3 HOH B 23 300 49 HOH HOH . F 3 HOH B 24 301 50 HOH HOH . F 3 HOH B 25 302 51 HOH HOH . F 3 HOH B 26 303 52 HOH HOH . F 3 HOH B 27 304 53 HOH HOH . F 3 HOH B 28 305 54 HOH HOH . F 3 HOH B 29 306 55 HOH HOH . F 3 HOH B 30 307 56 HOH HOH . F 3 HOH B 31 308 84 HOH HOH . F 3 HOH B 32 309 85 HOH HOH . F 3 HOH B 33 310 86 HOH HOH . F 3 HOH B 34 311 87 HOH HOH . F 3 HOH B 35 312 88 HOH HOH . F 3 HOH B 36 313 89 HOH HOH . F 3 HOH B 37 314 90 HOH HOH . F 3 HOH B 38 315 91 HOH HOH . F 3 HOH B 39 316 92 HOH HOH . F 3 HOH B 40 317 93 HOH HOH . F 3 HOH B 41 318 94 HOH HOH . F 3 HOH B 42 319 95 HOH HOH . F 3 HOH B 43 320 96 HOH HOH . F 3 HOH B 44 321 97 HOH HOH . F 3 HOH B 45 322 98 HOH HOH . F 3 HOH B 46 323 99 HOH HOH . F 3 HOH B 47 324 100 HOH HOH . F 3 HOH B 48 325 101 HOH HOH . F 3 HOH B 49 326 102 HOH HOH . F 3 HOH B 50 327 105 HOH HOH . F 3 HOH B 51 328 108 HOH HOH . F 3 HOH B 52 329 109 HOH HOH . F 3 HOH B 53 330 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . C 2 50.685 45.707 -10.426 1 60.57 ? C1 MMA 277 A 1 HETATM 2 C C2 MMA . . . C 2 49.718 46.454 -9.43 1 48.67 ? C2 MMA 277 A 1 HETATM 3 C C3 MMA . . . C 2 50.244 46.224 -7.966 1 49.48 ? C3 MMA 277 A 1 HETATM 4 C C4 MMA . . . C 2 50.453 44.716 -7.678 1 52.27 ? C4 MMA 277 A 1 HETATM 5 C C5 MMA . . . C 2 51.239 44.032 -8.781 1 55.74 ? C5 MMA 277 A 1 HETATM 6 C C6 MMA . . . C 2 51.539 42.533 -8.517 1 63.46 ? C6 MMA 277 A 1 HETATM 7 C C7 MMA . . . C 2 52.625 46.367 -11.858 1 62.51 ? C7 MMA 277 A 1 HETATM 8 O O1 MMA . . . C 2 52.01 46.263 -10.568 1 61.96 ? O1 MMA 277 A 1 HETATM 9 O O2 MMA . . . C 2 48.354 46.132 -9.603 1 47.2 ? O2 MMA 277 A 1 HETATM 10 O O3 MMA . . . C 2 49.512 46.882 -6.967 1 46.97 ? O3 MMA 277 A 1 HETATM 11 O O4 MMA . . . C 2 50.947 44.457 -6.377 1 51.38 ? O4 MMA 277 A 1 HETATM 12 O O5 MMA . . . C 2 50.653 44.298 -10.061 1 58.52 ? O5 MMA 277 A 1 HETATM 13 O O6 MMA . . . C 2 51.996 41.778 -9.615 1 65.49 ? O6 MMA 277 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #