data_3M7P # _model_server_result.job_id DcQ6TBG1jArHlACdAl5PfQ _model_server_result.datetime_utc '2025-03-05 18:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1528}' # _entry.id 3M7P # _exptl.entry_id 3M7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M7P _cell.length_a 124.789 _cell.length_b 124.789 _cell.length_c 60.649 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 308 1_555 A SG CYS 39 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? disulf ? disulf2 A SG CYS 37 A CYS 333 1_555 A SG CYS 46 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? disulf ? disulf3 A SG CYS 64 A CYS 360 1_555 A SG CYS 90 A CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? disulf ? disulf4 A SG CYS 78 A CYS 374 1_555 A SG CYS 105 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? disulf ? disulf5 A SG CYS 124 A CYS 420 1_555 A SG CYS 150 A CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? disulf ? disulf6 A SG CYS 138 A CYS 434 1_555 A SG CYS 165 A CYS 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? disulf ? disulf7 A SG CYS 174 A CYS 470 1_555 A SG CYS 202 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? disulf ? disulf8 A SG CYS 200 A CYS 496 1_555 A SG CYS 212 A CYS 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? disulf ? disulf9 A SG CYS 247 A CYS 543 1_555 A SG CYS 259 A CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? disulf ? disulf10 A SG CYS 265 A CYS 561 1_555 A SG CYS 293 A CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? disulf ? disulf11 A SG CYS 291 A CYS 587 1_555 A SG CYS 303 A CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? covale ? covale1 A ND2 ASN 134 A ASN 430 1_555 B C1 NAG . A NAG 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale2 A ND2 ASN 232 A ASN 528 1_555 C C1 NAG . A NAG 1528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale3 A ND2 ASN 246 A ASN 542 1_555 D C1 NAG . A NAG 1542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? metalc ? metalc1 N O HOH . A HOH 10 1_555 I ZN ZN . A ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 N O HOH . A HOH 13 1_555 G ZN ZN . A ZN 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc3 N O HOH . A HOH 34 1_555 F ZN ZN . A ZN 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 N O HOH . A HOH 36 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 N O HOH . A HOH 37 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc6 N O HOH . A HOH 38 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc7 N O HOH . A HOH 39 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 N O HOH . A HOH 40 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 A ND1 HIS 3 A HIS 299 1_555 I ZN ZN . A ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc10 A ND1 HIS 11 A HIS 307 1_555 I ZN ZN . A ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 A NE2 HIS 87 A HIS 383 1_555 G ZN ZN . A ZN 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc12 A NE2 HIS 170 A HIS 466 1_555 H ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc13 A OE1 GLU 171 A GLU 467 1_555 E ZN ZN . A ZN 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 A OE2 GLU 171 A GLU 467 1_555 E ZN ZN . A ZN 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc15 A OE1 GLU 172 A GLU 468 1_555 H ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc16 A OE2 GLU 178 A GLU 474 1_555 J ZN ZN . A ZN 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc17 A NE2 HIS 192 A HIS 488 1_555 J ZN ZN . A ZN 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc18 A OD1 ASP 233 A ASP 529 1_555 E ZN ZN . A ZN 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc19 A ND1 HIS 236 A HIS 532 1_555 E ZN ZN . A ZN 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc20 A NE2 HIS 239 A HIS 535 1_555 F ZN ZN . A ZN 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc21 A OE2 GLU 241 A GLU 537 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc22 A NE2 HIS 285 A HIS 581 1_555 J ZN ZN . A ZN 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc23 A ND1 HIS 302 A HIS 598 1_555 F ZN ZN . A ZN 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 323 n n C1 O1 NAG sing 324 n n C1 O5 NAG sing 325 n n C1 H1 NAG sing 326 n n C2 C3 NAG sing 327 n n C2 N2 NAG sing 328 n n C2 H2 NAG sing 329 n n C3 C4 NAG sing 330 n n C3 O3 NAG sing 331 n n C3 H3 NAG sing 332 n n C4 C5 NAG sing 333 n n C4 O4 NAG sing 334 n n C4 H4 NAG sing 335 n n C5 C6 NAG sing 336 n n C5 O5 NAG sing 337 n n C5 H5 NAG sing 338 n n C6 O6 NAG sing 339 n n C6 H61 NAG sing 340 n n C6 H62 NAG sing 341 n n C7 C8 NAG sing 342 n n C7 N2 NAG sing 343 n n C7 O7 NAG doub 344 n n C8 H81 NAG sing 345 n n C8 H82 NAG sing 346 n n C8 H83 NAG sing 347 n n N2 HN2 NAG sing 348 n n O1 HO1 NAG sing 349 n n O3 HO3 NAG sing 350 n n O4 HO4 NAG sing 351 n n O6 HO6 NAG sing 352 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3M7P _atom_sites.fract_transf_matrix[1][1] 0.008014 _atom_sites.fract_transf_matrix[1][2] 0.004627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1430 1430 NAG NAG . C 2 NAG A 1 1528 1528 NAG NAG . D 2 NAG A 1 1542 1542 NAG NAG . E 3 ZN A 1 953 953 ZN ZN . F 3 ZN A 1 954 954 ZN ZN . G 3 ZN A 1 956 956 ZN ZN . H 3 ZN A 1 957 957 ZN ZN . I 3 ZN A 1 958 958 ZN ZN . J 3 ZN A 1 959 959 ZN ZN . K 3 ZN A 1 955 955 ZN ZN . L 4 12P A 1 189 189 12P 12P . M 4 12P A 1 190 190 12P 12P . N 5 HOH A 1 1 1 HOH HOH . N 5 HOH A 2 2 2 HOH HOH . N 5 HOH A 3 3 3 HOH HOH . N 5 HOH A 4 4 4 HOH HOH . N 5 HOH A 5 5 5 HOH HOH . N 5 HOH A 6 6 6 HOH HOH . N 5 HOH A 7 7 7 HOH HOH . N 5 HOH A 8 8 8 HOH HOH . N 5 HOH A 9 9 9 HOH HOH . N 5 HOH A 10 10 10 HOH HOH . N 5 HOH A 11 11 11 HOH HOH . N 5 HOH A 12 12 12 HOH HOH . N 5 HOH A 13 13 13 HOH HOH . N 5 HOH A 14 14 14 HOH HOH . N 5 HOH A 15 15 15 HOH HOH . N 5 HOH A 16 16 16 HOH HOH . N 5 HOH A 17 17 17 HOH HOH . N 5 HOH A 18 18 18 HOH HOH . N 5 HOH A 19 20 20 HOH HOH . N 5 HOH A 20 21 21 HOH HOH . N 5 HOH A 21 23 23 HOH HOH . N 5 HOH A 22 26 26 HOH HOH . N 5 HOH A 23 27 27 HOH HOH . N 5 HOH A 24 28 28 HOH HOH . N 5 HOH A 25 30 30 HOH HOH . N 5 HOH A 26 31 31 HOH HOH . N 5 HOH A 27 32 32 HOH HOH . N 5 HOH A 28 33 33 HOH HOH . N 5 HOH A 29 34 34 HOH HOH . N 5 HOH A 30 35 35 HOH HOH . N 5 HOH A 31 36 36 HOH HOH . N 5 HOH A 32 37 37 HOH HOH . N 5 HOH A 33 38 38 HOH HOH . N 5 HOH A 34 39 39 HOH HOH . N 5 HOH A 35 40 40 HOH HOH . N 5 HOH A 36 41 41 HOH HOH . N 5 HOH A 37 42 42 HOH HOH . N 5 HOH A 38 43 43 HOH HOH . N 5 HOH A 39 44 44 HOH HOH . N 5 HOH A 40 45 45 HOH HOH . N 5 HOH A 41 46 46 HOH HOH . N 5 HOH A 42 48 48 HOH HOH . N 5 HOH A 43 49 49 HOH HOH . N 5 HOH A 44 50 50 HOH HOH . N 5 HOH A 45 51 51 HOH HOH . N 5 HOH A 46 52 52 HOH HOH . N 5 HOH A 47 53 53 HOH HOH . N 5 HOH A 48 54 54 HOH HOH . N 5 HOH A 49 55 55 HOH HOH . N 5 HOH A 50 56 56 HOH HOH . N 5 HOH A 51 57 57 HOH HOH . N 5 HOH A 52 58 58 HOH HOH . N 5 HOH A 53 59 59 HOH HOH . N 5 HOH A 54 60 60 HOH HOH . N 5 HOH A 55 61 61 HOH HOH . N 5 HOH A 56 62 62 HOH HOH . N 5 HOH A 57 63 63 HOH HOH . N 5 HOH A 58 64 64 HOH HOH . N 5 HOH A 59 65 65 HOH HOH . N 5 HOH A 60 66 66 HOH HOH . N 5 HOH A 61 67 67 HOH HOH . N 5 HOH A 62 68 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 46.652 47.142 -21.178 1 28.07 ? C1 NAG 1528 A 1 HETATM 2 C C2 NAG . . . C 2 48.177 47.274 -21.312 1 35.32 ? C2 NAG 1528 A 1 HETATM 3 C C3 NAG . . . C 2 48.681 46.77 -22.66 1 36.47 ? C3 NAG 1528 A 1 HETATM 4 C C4 NAG . . . C 2 48.269 45.34 -22.828 1 40.11 ? C4 NAG 1528 A 1 HETATM 5 C C5 NAG . . . C 2 46.779 45.289 -22.771 1 37.56 ? C5 NAG 1528 A 1 HETATM 6 C C6 NAG . . . C 2 46.544 43.773 -22.816 1 40.16 ? C6 NAG 1528 A 1 HETATM 7 C C7 NAG . . . C 2 48.532 49.367 -20.086 1 37.29 ? C7 NAG 1528 A 1 HETATM 8 C C8 NAG . . . C 2 48.507 50.905 -20.288 1 27.71 ? C8 NAG 1528 A 1 HETATM 9 N N2 NAG . . . C 2 48.605 48.669 -21.214 1 32.63 ? N2 NAG 1528 A 1 HETATM 10 O O3 NAG . . . C 2 50.11 46.78 -22.645 1 36.64 ? O3 NAG 1528 A 1 HETATM 11 O O4 NAG . . . C 2 48.689 44.898 -24.118 1 52.83 ? O4 NAG 1528 A 1 HETATM 12 O O5 NAG . . . C 2 46.327 45.79 -21.511 1 36.05 ? O5 NAG 1528 A 1 HETATM 13 O O6 NAG . . . C 2 45.22 43.546 -23.277 1 55.6 ? O6 NAG 1528 A 1 HETATM 14 O O7 NAG . . . C 2 48.477 48.878 -18.961 1 34.41 ? O7 NAG 1528 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 598 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #